IVF0003825 (gene) Melon (IVF77) v1

Overview


Name	IVF0003825
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposable element Tf2
Location	chr02: 16850805 .. 16851056 (+)
RNA-Seq Expression	IVF0003825
Synteny	IVF0003825

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCGAGAAAAAGAAGAAGACCAGTTCCTTCTCACGAAGAATTCAATTATGACCTCCATCGCTGGAGCTAAATCTGAGGCAGATCTCCAAGCGGTCATGGAAATAGTCATCCACACTATTTCCAACGATAACAAGGAGGATGACCCTGAAGATAATGAAATTTCTTCAGATTCATCCGTCAATGATATTGAATTTGACAATGATCCATACTACAACTTCGATATTTTCGACCCCTATTTGGATTCCTAA

mRNA sequence

ATGTCTCGAGAAAAAGAAGAAGACCAGTTCCTTCTCACGAAGAATTCAATTATGACCTCCATCGCTGGAGCTAAATCTGAGGCAGATCTCCAAGCGGTCATGGAAATAGTCATCCACACTATTTCCAACGATAACAAGGAGGATGACCCTGAAGATAATGAAATTTCTTCAGATTCATCCGTCAATGATATTGAATTTGACAATGATCCATACTACAACTTCGATATTTTCGACCCCTATTTGGATTCCTAA

Coding sequence (CDS)

ATGTCTCGAGAAAAAGAAGAAGACCAGTTCCTTCTCACGAAGAATTCAATTATGACCTCCATCGCTGGAGCTAAATCTGAGGCAGATCTCCAAGCGGTCATGGAAATAGTCATCCACACTATTTCCAACGATAACAAGGAGGATGACCCTGAAGATAATGAAATTTCTTCAGATTCATCCGTCAATGATATTGAATTTGACAATGATCCATACTACAACTTCGATATTTTCGACCCCTATTTGGATTCCTAA

Protein sequence

MSREKEEDQFLLTKNSIMTSIAGAKSEADLQAVMEIVIHTISNDNKEDDPEDNEISSDSSVNDIEFDNDPYYNFDIFDPYLDS

Homology

[Close]

BLAST of IVF0003825 vs. ExPASy TrEMBL
Match: A0A5A7VA49 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G00290 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.5e-26
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 18 MTSIAGAKSEADLQAVMEIVIHTISNDNKEDDPEDNEISSDSSVNDIEFDNDPYYNFDIF 77
          MTSIAGAKSEADLQAVMEIVIHTISNDNKEDDPEDNEISSDSSVNDIEFDNDPYYNFDIF
Sbjct: 1  MTSIAGAKSEADLQAVMEIVIHTISNDNKEDDPEDNEISSDSSVNDIEFDNDPYYNFDIF 60

Query: 78 DPYLDS 84
          DPYLDS
Sbjct: 61 DPYLDS 66

[Close]

BLAST of IVF0003825 vs. ExPASy TrEMBL
Match: A0A5A7UEA0 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00850 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 8.4e-25
Identity = 64/79 (81.01%), Postives = 71/79 (89.87%), Query Frame = 0


Query: 5   KEEDQFLLTKNSIMTSIAGAKSEADLQAVMEIVIHTISNDNKEDDPEDNEISSDSSVNDI 64
           +EEDQFLL KNSIMTSIAGAKSEADLQA+M+ V+H I +DNKEDDPED  ISSDSSVN+I
Sbjct: 120 EEEDQFLLAKNSIMTSIAGAKSEADLQAIMKTVVHNIFDDNKEDDPEDTRISSDSSVNNI 179

Query: 65  EFDNDPYYNFDIFDPYLDS 84
           + DND YYNFDIFDPYLDS
Sbjct: 180 DSDNDLYYNFDIFDPYLDS 198

[Close]

BLAST of IVF0003825 vs. ExPASy TrEMBL
Match: A0A5D3BP68 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G001310 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.1e-23
Identity = 63/82 (76.83%), Postives = 69/82 (84.15%), Query Frame = 0


Query: 2  SREKEEDQFLLTKNSIMTSIAGAKSEADLQAVMEIVIHTISNDNKEDDPEDNEISSDSSV 61
          S  +EE+Q+L  KNSIMT I GAKSEADLQAVME VIHTI NDNKED+PE+  IS DSS+
Sbjct: 8  SLSREENQYLHAKNSIMTFIVGAKSEADLQAVMETVIHTIFNDNKEDNPENTRISLDSSI 67

Query: 62 NDIEFDNDPYYNFDIFDPYLDS 84
          NDI FDNDPYYNFDIFD YLDS
Sbjct: 68 NDINFDNDPYYNFDIFDLYLDS 89

[Close]

BLAST of IVF0003825 vs. ExPASy TrEMBL
Match: A0A0A0KXT5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G097660 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.3e-22
Identity = 61/80 (76.25%), Postives = 68/80 (85.00%), Query Frame = 0


Query: 4   EKEEDQFLLTKNSIMTSIAGAKSEADLQAVMEIVIHTISNDNKEDDPEDNEISSDSSVND 63
           ++EEDQFLL KNSIMT IAGAKSEADLQ VME VIHTI +D+KE+D ED  ISS+S  ND
Sbjct: 60  QEEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFAND 119

Query: 64  IEFDNDPYYNFDIFDPYLDS 84
           I+FDNDPYYNFDI DPY DS
Sbjct: 120 IDFDNDPYYNFDISDPYFDS 139

[Close]

BLAST of IVF0003825 vs. ExPASy TrEMBL
Match: A0A5D3BY11 (Cysteine-rich RLK RECEPTOR-like protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1133G00050 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 5.1e-22
Identity = 62/79 (78.48%), Postives = 68/79 (86.08%), Query Frame = 0


Query: 5   KEEDQFLLTKNSIMTSIAGAKSEADLQAVMEIVIHTISNDNKEDDPEDNEISSDSSVNDI 64
           +EEDQFLL KNSIMTSIA AKSEADLQAVME V++  S+DNK+D PED    SDSSVNDI
Sbjct: 127 REEDQFLLAKNSIMTSIAEAKSEADLQAVMETVVNNNSDDNKQDHPEDIINLSDSSVNDI 186

Query: 65  EFDNDPYYNFDIFDPYLDS 84
           +F NDPYYNFDIFDPYLDS
Sbjct: 187 DFANDPYYNFDIFDPYLDS 205

[Close]

BLAST of IVF0003825 vs. NCBI nr
Match: KAA0062549.1 (hypothetical protein E6C27_scaffold79G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 127 bits (318), Expect = 2.55e-36
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 18 MTSIAGAKSEADLQAVMEIVIHTISNDNKEDDPEDNEISSDSSVNDIEFDNDPYYNFDIF 77
          MTSIAGAKSEADLQAVMEIVIHTISNDNKEDDPEDNEISSDSSVNDIEFDNDPYYNFDIF
Sbjct: 1  MTSIAGAKSEADLQAVMEIVIHTISNDNKEDDPEDNEISSDSSVNDIEFDNDPYYNFDIF 60

Query: 78 DPYLDS 83
          DPYLDS
Sbjct: 61 DPYLDS 66

[Close]

BLAST of IVF0003825 vs. NCBI nr
Match: KAA0051819.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK21425.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 123 bits (308), Expect = 4.14e-33
Identity = 64/79 (81.01%), Postives = 71/79 (89.87%), Query Frame = 0


Query: 5   KEEDQFLLTKNSIMTSIAGAKSEADLQAVMEIVIHTISNDNKEDDPEDNEISSDSSVNDI 64
           +EEDQFLL KNSIMTSIAGAKSEADLQA+M+ V+H I +DNKEDDPED  ISSDSSVN+I
Sbjct: 120 EEEDQFLLAKNSIMTSIAGAKSEADLQAIMKTVVHNIFDDNKEDDPEDTRISSDSSVNNI 179

Query: 65  EFDNDPYYNFDIFDPYLDS 83
           + DND YYNFDIFDPYLDS
Sbjct: 180 DSDNDLYYNFDIFDPYLDS 198

[Close]

BLAST of IVF0003825 vs. NCBI nr
Match: KAA0066324.1 (hypothetical protein E6C27_scaffold21G003850 [Cucumis melo var. makuwa] >TYK00955.1 hypothetical protein E5676_scaffold602G001310 [Cucumis melo var. makuwa])

HSP 1 Score: 118 bits (296), Expect = 1.21e-32
Identity = 63/82 (76.83%), Postives = 69/82 (84.15%), Query Frame = 0


Query: 2  SREKEEDQFLLTKNSIMTSIAGAKSEADLQAVMEIVIHTISNDNKEDDPEDNEISSDSSV 61
          S  +EE+Q+L  KNSIMT I GAKSEADLQAVME VIHTI NDNKED+PE+  IS DSS+
Sbjct: 8  SLSREENQYLHAKNSIMTFIVGAKSEADLQAVMETVIHTIFNDNKEDNPENTRISLDSSI 67

Query: 62 NDIEFDNDPYYNFDIFDPYLDS 83
          NDI FDNDPYYNFDIFD YLDS
Sbjct: 68 NDINFDNDPYYNFDIFDLYLDS 89

[Close]

BLAST of IVF0003825 vs. NCBI nr
Match: KGN53659.1 (hypothetical protein Csa_014527 [Cucumis sativus])

HSP 1 Score: 115 bits (287), Expect = 1.22e-30
Identity = 61/80 (76.25%), Postives = 68/80 (85.00%), Query Frame = 0


Query: 4   EKEEDQFLLTKNSIMTSIAGAKSEADLQAVMEIVIHTISNDNKEDDPEDNEISSDSSVND 63
           ++EEDQFLL KNSIMT IAGAKSEADLQ VME VIHTI +D+KE+D ED  ISS+S  ND
Sbjct: 60  QEEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFAND 119

Query: 64  IEFDNDPYYNFDIFDPYLDS 83
           I+FDNDPYYNFDI DPY DS
Sbjct: 120 IDFDNDPYYNFDISDPYFDS 139

[Close]

BLAST of IVF0003825 vs. NCBI nr
Match: TYK04653.1 (cysteine-rich RLK RECEPTOR-like protein kinase [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (284), Expect = 1.93e-29
Identity = 62/79 (78.48%), Postives = 68/79 (86.08%), Query Frame = 0


Query: 5   KEEDQFLLTKNSIMTSIAGAKSEADLQAVMEIVIHTISNDNKEDDPEDNEISSDSSVNDI 64
           +EEDQFLL KNSIMTSIA AKSEADLQAVME V++  S+DNK+D PED    SDSSVNDI
Sbjct: 127 REEDQFLLAKNSIMTSIAEAKSEADLQAVMETVVNNNSDDNKQDHPEDIINLSDSSVNDI 186

Query: 65  EFDNDPYYNFDIFDPYLDS 83
           +F NDPYYNFDIFDPYLDS
Sbjct: 187 DFANDPYYNFDIFDPYLDS 205

The following BLAST results are available for this feature:

BLAST of IVF0003825 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0003825 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VA49	4.5e-26	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UEA0	8.4e-25	81.01	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5D3BP68	2.1e-23	76.83	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KXT5	2.3e-22	76.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G097660 PE=4 SV=1	[more]
A0A5D3BY11	5.1e-22	78.48	Cysteine-rich RLK RECEPTOR-like protein kinase OS=Cucumis melo var. makuwa OX=11...	[more]

BLAST of IVF0003825 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062549.1	2.55e-36	100.00	hypothetical protein E6C27_scaffold79G00290 [Cucumis melo var. makuwa]	[more]
KAA0051819.1	4.14e-33	81.01	Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK21425.1 Retrotransp...	[more]
KAA0066324.1	1.21e-32	76.83	hypothetical protein E6C27_scaffold21G003850 [Cucumis melo var. makuwa] >TYK0095...	[more]
KGN53659.1	1.22e-30	76.25	hypothetical protein Csa_014527 [Cucumis sativus]	[more]
TYK04653.1	1.93e-29	78.48	cysteine-rich RLK RECEPTOR-like protein kinase [Cucumis melo var. makuwa]	[more]

BLAST of IVF0003825 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0003825.1	IVF0003825.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
molecular_function	GO:0016301	kinase activity