IVF0003821 (gene) Melon (IVF77) v1

Overview
NameIVF0003821
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr05: 7854269 .. 7854472 (+)
RNA-Seq ExpressionIVF0003821
SyntenyIVF0003821
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGTGTTGTCTGCTACACAATCTTATCAATAGAGAGATGACTAACAGTGAAATAATCGATGATTTGGATGAGGGTGATTCAACATACGCTACAACTGGAGGTGACGAGATTAATTACATTGAGGCTTCAAACGGATGGAGTGAATGGAGGGATCAATTGGCTCGTACGATGTTCAGTAATTGGGAGTTACATGACCAGTAG

mRNA sequence

ATGGTGTGTTGTCTGCTACACAATCTTATCAATAGAGAGATGACTAACAGTGAAATAATCGATGATTTGGATGAGGGTGATTCAACATACGCTACAACTGGAGGTGACGAGATTAATTACATTGAGGCTTCAAACGGATGGAGTGAATGGAGGGATCAATTGGCTCGTACGATGTTCAGTAATTGGGAGTTACATGACCAGTAG

Coding sequence (CDS)

ATGGTGTGTTGTCTGCTACACAATCTTATCAATAGAGAGATGACTAACAGTGAAATAATCGATGATTTGGATGAGGGTGATTCAACATACGCTACAACTGGAGGTGACGAGATTAATTACATTGAGGCTTCAAACGGATGGAGTGAATGGAGGGATCAATTGGCTCGTACGATGTTCAGTAATTGGGAGTTACATGACCAGTAG

Protein sequence

MVCCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEASNGWSEWRDQLARTMFSNWELHDQ
Homology
BLAST of IVF0003821 vs. ExPASy TrEMBL
Match: A0A5A7V6M3 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold178G00030 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 5.6e-27
Identity = 61/67 (91.04%), Postives = 62/67 (92.54%), Query Frame = 0

Query: 1   MVCCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEASNGWSEWRDQLARTMFS 60
           M CCLLHNLINREMTNSEIIDDLDE DSTYATTGGDEINYIEASN WSEWRDQLA TMFS
Sbjct: 180 MACCLLHNLINREMTNSEIIDDLDEADSTYATTGGDEINYIEASNEWSEWRDQLAHTMFS 239

Query: 61  NWELHDQ 68
           +WEL DQ
Sbjct: 240 DWELCDQ 246

BLAST of IVF0003821 vs. ExPASy TrEMBL
Match: A0A5D3DG22 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold523G00290 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 7.3e-27
Identity = 61/67 (91.04%), Postives = 62/67 (92.54%), Query Frame = 0

Query: 1   MVCCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEASNGWSEWRDQLARTMFS 60
           M CCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEASN WSEWRDQLA TMFS
Sbjct: 258 MACCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEASNEWSEWRDQLAHTMFS 317

Query: 61  NWELHDQ 68
           +WEL  Q
Sbjct: 318 DWELQWQ 324

BLAST of IVF0003821 vs. ExPASy TrEMBL
Match: A0A5A7TJS2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold335G00710 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 8.0e-26
Identity = 60/67 (89.55%), Postives = 61/67 (91.04%), Query Frame = 0

Query: 1   MVCCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEASNGWSEWRDQLARTMFS 60
           M CCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIE SN WSE RDQLA TMFS
Sbjct: 105 MACCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEVSNEWSELRDQLAYTMFS 164

Query: 61  NWELHDQ 68
           +WEL DQ
Sbjct: 165 DWELRDQ 171

BLAST of IVF0003821 vs. ExPASy TrEMBL
Match: A0A5D3D8J6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold307G00030 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 8.0e-26
Identity = 60/67 (89.55%), Postives = 61/67 (91.04%), Query Frame = 0

Query: 1   MVCCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEASNGWSEWRDQLARTMFS 60
           M CCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIE SN WSE RDQLA TMFS
Sbjct: 105 MACCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEVSNEWSELRDQLAYTMFS 164

Query: 61  NWELHDQ 68
           +WEL DQ
Sbjct: 165 DWELRDQ 171

BLAST of IVF0003821 vs. ExPASy TrEMBL
Match: A0A5D3CHV9 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold107G00220 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.8e-25
Identity = 58/66 (87.88%), Postives = 60/66 (90.91%), Query Frame = 0

Query: 1   MVCCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEASNGWSEWRDQLARTMFS 60
           MVCCLLHNLINREMTNSEI D+LDE DSTY TTGGDEINYIEASN WSEWRDQLA TMFS
Sbjct: 130 MVCCLLHNLINREMTNSEITDNLDEDDSTYTTTGGDEINYIEASNEWSEWRDQLAHTMFS 189

Query: 61  NWELHD 67
           +WEL D
Sbjct: 190 DWELRD 195

BLAST of IVF0003821 vs. NCBI nr
Match: KAA0063753.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK05505.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 131 bits (329), Expect = 4.68e-36
Identity = 61/67 (91.04%), Postives = 62/67 (92.54%), Query Frame = 0

Query: 1   MVCCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEASNGWSEWRDQLARTMFS 60
           M CCLLHNLINREMTNSEIIDDLDE DSTYATTGGDEINYIEASN WSEWRDQLA TMFS
Sbjct: 180 MACCLLHNLINREMTNSEIIDDLDEADSTYATTGGDEINYIEASNEWSEWRDQLAHTMFS 239

Query: 61  NWELHDQ 67
           +WEL DQ
Sbjct: 240 DWELCDQ 246

BLAST of IVF0003821 vs. NCBI nr
Match: TYK10940.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 126 bits (316), Expect = 1.12e-34
Identity = 58/66 (87.88%), Postives = 60/66 (90.91%), Query Frame = 0

Query: 1   MVCCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEASNGWSEWRDQLARTMFS 60
           MVCCLLHNLINREMTNSEI D+LDE DSTY TTGGDEINYIEASN WSEWRDQLA TMFS
Sbjct: 130 MVCCLLHNLINREMTNSEITDNLDEDDSTYTTTGGDEINYIEASNEWSEWRDQLAHTMFS 189

Query: 61  NWELHD 66
           +WEL D
Sbjct: 190 DWELRD 195

BLAST of IVF0003821 vs. NCBI nr
Match: XP_008441953.1 (PREDICTED: uncharacterized protein LOC103485952 [Cucumis melo] >KAA0047737.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 126 bits (316), Expect = 4.44e-34
Identity = 59/67 (88.06%), Postives = 61/67 (91.04%), Query Frame = 0

Query: 1   MVCCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEASNGWSEWRDQLARTMFS 60
           M CCLLHNLI REMTN+EIIDDLDEGDSTYATTGGDEINYIEASN WSE RDQLA TMFS
Sbjct: 182 MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 241

Query: 61  NWELHDQ 67
           +WEL DQ
Sbjct: 242 DWELRDQ 248

BLAST of IVF0003821 vs. NCBI nr
Match: TYK08389.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 126 bits (316), Expect = 4.44e-34
Identity = 59/67 (88.06%), Postives = 61/67 (91.04%), Query Frame = 0

Query: 1   MVCCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEASNGWSEWRDQLARTMFS 60
           M CCLLHNLI REMTN+EIIDDLDEGDSTYATTGGDEINYIEASN WSE RDQLA TMFS
Sbjct: 182 MACCLLHNLIKREMTNNEIIDDLDEGDSTYATTGGDEINYIEASNEWSELRDQLAHTMFS 241

Query: 61  NWELHDQ 67
           +WEL DQ
Sbjct: 242 DWELRDQ 248

BLAST of IVF0003821 vs. NCBI nr
Match: KAA0037721.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 124 bits (312), Expect = 9.23e-34
Identity = 58/66 (87.88%), Postives = 60/66 (90.91%), Query Frame = 0

Query: 1   MVCCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEASNGWSEWRDQLARTMFS 60
           MVC LLHNLINREMTNSEI D+LDEGDSTY TTGGDEINYIEASN WSEWRDQLA TMFS
Sbjct: 157 MVCYLLHNLINREMTNSEITDNLDEGDSTYTTTGGDEINYIEASNEWSEWRDQLAHTMFS 216

Query: 61  NWELHD 66
           +WEL D
Sbjct: 217 DWELRD 222

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V6M35.6e-2791.04Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5D3DG227.3e-2791.04Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TJS28.0e-2689.55Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3D8J68.0e-2689.55Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CHV91.8e-2587.88Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
Match NameE-valueIdentityDescription
KAA0063753.14.68e-3691.04putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK05505.1 putative nucleas... [more]
TYK10940.11.12e-3487.88putative nuclease HARBI1 [Cucumis melo var. makuwa][more]
XP_008441953.14.44e-3488.06PREDICTED: uncharacterized protein LOC103485952 [Cucumis melo] >KAA0047737.1 put... [more]
TYK08389.14.44e-3488.06putative nuclease HARBI1 [Cucumis melo var. makuwa][more]
KAA0037721.19.23e-3487.88putative nuclease HARBI1 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0003821.1IVF0003821.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding