IVF0003758 (gene) Melon (IVF77) v1

Overview


Name	IVF0003758
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	CACTA en-spm transposon protein
Location	chr07: 13059931 .. 13060501 (+)
RNA-Seq Expression	IVF0003758
Synteny	IVF0003758

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTTTTCTATGTTCAAGAAATTAGAGATAGGGGAGGTTCAGCCACCTTACATGAGGCTCCAGTTTGTTGACAGATCCATCACCAAGCTAGAGGGCAAGATGAAGATGTTTTGGTGAAGGTGAATAAATTTTGTTTCCCGCAGACTTCGTTATTCTGGATTACGAAGCTGATCGGGAGGTTCCAATCATTTTGGGGCAGCTATTCCTATTAACTAGCACTACAAGAAATAAGGGTTTTCCCGATGCCAAAAAGGACGTCGACACAAAGAACGTCGGGAATAAGGATACTCTCGATGCTGGACAAACGAGTCATGAAAACCGCATCGAAGAAAACTCTATTCTCGATGCCACGCACAATGCGTCGGGAGTGGCGTTGGGAAAAAGGGTATACCCTTATTCCCGATGCCATAAGGGGGATCTCCCGACGCTTTCGTGCGGCGTCAGGAGTCCTCTTTATAAACGTTTTAATTCTGTTTTACACAGAATTGAAAACGAAAGGGAAAGGGAGAAGAGAGAAACGAAGATTCGTCGCCATCCATCGCCGTTCTACCGCCGTCTGCCACCTTAG

mRNA sequence

ATGCCTTTTTCTATGTTCAAGAAATTAGAGATAGGGGAGGTTCAGCCACCTTACATGAGGCTCCAGTTTGTTGACAGATCCATCACCAAGCTAGAGGGCAAGATGAAGATCACTACAAGAAATAAGGGTTTTCCCGATGCCAAAAAGGACGTCGACACAAAGAACGTCGGGAATAAGGATACTCTCGATGCTGGACAAACGAGTCATGAAAACCGCATCGAAGAAAACTCTATTCTCGATGCCACGCACAATGCGTCGGGAGTGGCGTTGGGAAAAAGGGTATACCCTTATTCCCGATGCCATAAGGGGGATCTCCCGACGCTTTCGTGCGGCGTCAGGAGTCCTCTTTATAAACGTTTTAATTCTGTTTTACACAGAATTGAAAACGAAAGGGAAAGGGAGAAGAGAGAAACGAAGATTCGTCGCCATCCATCGCCGTTCTACCGCCGTCTGCCACCTTAG

Coding sequence (CDS)

ATGCCTTTTTCTATGTTCAAGAAATTAGAGATAGGGGAGGTTCAGCCACCTTACATGAGGCTCCAGTTTGTTGACAGATCCATCACCAAGCTAGAGGGCAAGATGAAGATCACTACAAGAAATAAGGGTTTTCCCGATGCCAAAAAGGACGTCGACACAAAGAACGTCGGGAATAAGGATACTCTCGATGCTGGACAAACGAGTCATGAAAACCGCATCGAAGAAAACTCTATTCTCGATGCCACGCACAATGCGTCGGGAGTGGCGTTGGGAAAAAGGGTATACCCTTATTCCCGATGCCATAAGGGGGATCTCCCGACGCTTTCGTGCGGCGTCAGGAGTCCTCTTTATAAACGTTTTAATTCTGTTTTACACAGAATTGAAAACGAAAGGGAAAGGGAGAAGAGAGAAACGAAGATTCGTCGCCATCCATCGCCGTTCTACCGCCGTCTGCCACCTTAG

Protein sequence

MPFSMFKKLEIGEVQPPYMRLQFVDRSITKLEGKMKITTRNKGFPDAKKDVDTKNVGNKDTLDAGQTSHENRIEENSILDATHNASGVALGKRVYPYSRCHKGDLPTLSCGVRSPLYKRFNSVLHRIENEREREKRETKIRRHPSPFYRRLPP

Homology

[Close]

BLAST of IVF0003758 vs. ExPASy TrEMBL
Match: A0A5D3BC59 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold220G00020 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 2.9e-71
Identity = 146/186 (78.49%), Postives = 148/186 (79.57%), Query Frame = 0


Query: 5   MFKKLEIGEVQPPYMRLQFVDRSITKLEGKMK---------------------------- 64
           MFKKLEIGEVQPPYMRLQFVDRSITKLEGK++                            
Sbjct: 1   MFKKLEIGEVQPPYMRLQFVDRSITKLEGKIEDVLVKVNKFLFPADFVILDYEADREVPI 60

Query: 65  ---------ITTRNKGFPDAKKDVDTKNVGNKDTLDAGQTSHENRIEENSILDATHNASG 124
                     TTRNKGFPDAKKDVDTKNVGNKDTLDAGQTSHENRIEENSILDATHNASG
Sbjct: 61  ILGQLFLLTSTTRNKGFPDAKKDVDTKNVGNKDTLDAGQTSHENRIEENSILDATHNASG 120

Query: 125 VALGKRVYPYSRCHKGDLPTLSCGVRSPLYKRFNSVLHRIENEREREKRETKIRRHPSPF 154
           VALGKRVYPYSRCHKGDLPTLSCGVRSPLYKRFNSVLHRIENEREREKRETKIRRHPSPF
Sbjct: 121 VALGKRVYPYSRCHKGDLPTLSCGVRSPLYKRFNSVLHRIENEREREKRETKIRRHPSPF 180

[Close]

BLAST of IVF0003758 vs. ExPASy TrEMBL
Match: A0A5A7TUY1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G00930 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 4.7e-29
Identity = 79/126 (62.70%), Postives = 85/126 (67.46%), Query Frame = 0


Query: 5   MFKKLEIGEVQPPYMRLQFVDRSITKLEGKMK---------------------------- 64
           MFKKLEI EVQP YMRLQFVDRSITKLEGK++                            
Sbjct: 1   MFKKLEIWEVQPTYMRLQFVDRSITKLEGKIEDVLVKVNKFLFPADFVILDYEADREVPI 60

Query: 65  ---------ITTRNKGFPDAKKDVDTKNVGNKDTLDAGQTSHENRIEENSILDATHNASG 94
                     TTRN+GFPDAK+DVDTKNVGNKDTL+AGQTS E+RIEENSILDATHNASG
Sbjct: 61  ILGQLFLLTSTTRNQGFPDAKEDVDTKNVGNKDTLNAGQTSRESRIEENSILDATHNASG 120

[Close]

BLAST of IVF0003758 vs. ExPASy TrEMBL
Match: A0A5D3DIG2 (Ulp1-like peptidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G004290 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.0e-12
Identity = 43/77 (55.84%), Postives = 55/77 (71.43%), Query Frame = 0


Query: 38  TTRNKGFPDAKKDVDTKNVGNKDTLDAGQTSHENRIEENSILDATHNASGVALGKRVYPY 97
           TTRN+GF +AKKD+DTKNVGNKD  DA QTS E+ I EN IL+ATHNA GVA  K+++P 
Sbjct: 100 TTRNQGFSEAKKDLDTKNVGNKDIPDAEQTSRESCIRENPILEATHNALGVASKKKIFPM 159

Query: 98  SRCHKGDLPTLSCGVRS 115
            +     +   + G+RS
Sbjct: 160 RQAR---VDQTALGIRS 173

[Close]

BLAST of IVF0003758 vs. ExPASy TrEMBL
Match: A0A5A7UXK9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold108G00180 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 5.6e-06
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 0


Query: 50 DVDTKNVGNKDTLDAGQTSHENRIEENSILDATHNASGVALGKRVYP 97
          +V TKN  NKD +D GQT  E+R+ EN ILD  HNASGVA GKR++P
Sbjct: 41 NVSTKNNWNKDIIDVGQTRRESRVGENPILDVMHNASGVASGKRLFP 87

[Close]

BLAST of IVF0003758 vs. ExPASy TrEMBL
Match: A0A5D3CIL9 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold66G00490 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.1e-05
Identity = 30/44 (68.18%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 38 TTRNKGFPDAKKDVDTKNVGNKDTLDAGQTSHENRIEENSILDA 82
          +TRN+ FPDAKK+V TKNVGNK  LD GQT  E+RI EN I DA
Sbjct: 23 STRNRDFPDAKKNVGTKNVGNKGILDVGQTRRESRIGENPIPDA 66

[Close]

BLAST of IVF0003758 vs. NCBI nr
Match: TYJ96903.1 (uncharacterized protein E5676_scaffold220G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 276 bits (706), Expect = 1.42e-92
Identity = 146/186 (78.49%), Postives = 148/186 (79.57%), Query Frame = 0


Query: 5   MFKKLEIGEVQPPYMRLQFVDRSITKLEGKMK---------------------------- 64
           MFKKLEIGEVQPPYMRLQFVDRSITKLEGK++                            
Sbjct: 1   MFKKLEIGEVQPPYMRLQFVDRSITKLEGKIEDVLVKVNKFLFPADFVILDYEADREVPI 60

Query: 65  ---------ITTRNKGFPDAKKDVDTKNVGNKDTLDAGQTSHENRIEENSILDATHNASG 124
                     TTRNKGFPDAKKDVDTKNVGNKDTLDAGQTSHENRIEENSILDATHNASG
Sbjct: 61  ILGQLFLLTSTTRNKGFPDAKKDVDTKNVGNKDTLDAGQTSHENRIEENSILDATHNASG 120

Query: 125 VALGKRVYPYSRCHKGDLPTLSCGVRSPLYKRFNSVLHRIENEREREKRETKIRRHPSPF 153
           VALGKRVYPYSRCHKGDLPTLSCGVRSPLYKRFNSVLHRIENEREREKRETKIRRHPSPF
Sbjct: 121 VALGKRVYPYSRCHKGDLPTLSCGVRSPLYKRFNSVLHRIENEREREKRETKIRRHPSPF 180

[Close]

BLAST of IVF0003758 vs. NCBI nr
Match: KAA0045321.1 (uncharacterized protein E6C27_scaffold316G00930 [Cucumis melo var. makuwa])

HSP 1 Score: 136 bits (343), Expect = 2.94e-37
Identity = 79/126 (62.70%), Postives = 85/126 (67.46%), Query Frame = 0


Query: 5   MFKKLEIGEVQPPYMRLQFVDRSITKLEGKMK---------------------------- 64
           MFKKLEI EVQP YMRLQFVDRSITKLEGK++                            
Sbjct: 1   MFKKLEIWEVQPTYMRLQFVDRSITKLEGKIEDVLVKVNKFLFPADFVILDYEADREVPI 60

Query: 65  ---------ITTRNKGFPDAKKDVDTKNVGNKDTLDAGQTSHENRIEENSILDATHNASG 93
                     TTRN+GFPDAK+DVDTKNVGNKDTL+AGQTS E+RIEENSILDATHNASG
Sbjct: 61  ILGQLFLLTSTTRNQGFPDAKEDVDTKNVGNKDTLNAGQTSRESRIEENSILDATHNASG 120

[Close]

BLAST of IVF0003758 vs. NCBI nr
Match: KAA0040338.1 (Ulp1-like peptidase [Cucumis melo var. makuwa] >TYK23365.1 Ulp1-like peptidase [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 6.27e-16
Identity = 43/77 (55.84%), Postives = 55/77 (71.43%), Query Frame = 0


Query: 38  TTRNKGFPDAKKDVDTKNVGNKDTLDAGQTSHENRIEENSILDATHNASGVALGKRVYPY 97
           TTRN+GF +AKKD+DTKNVGNKD  DA QTS E+ I EN IL+ATHNA GVA  K+++P 
Sbjct: 100 TTRNQGFSEAKKDLDTKNVGNKDIPDAEQTSRESCIRENPILEATHNALGVASKKKIFPM 159

Query: 98  SRCHKGDLPTLSCGVRS 114
            +     +   + G+RS
Sbjct: 160 RQAR---VDQTALGIRS 173

[Close]

BLAST of IVF0003758 vs. NCBI nr
Match: KAA0059764.1 (uncharacterized protein E6C27_scaffold108G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 2.41e-08
Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = 0


Query: 51 VDTKNVGNKDTLDAGQTSHENRIEENSILDATHNASGVALGKRVYP 96
          V TKN  NKD +D GQT  E+R+ EN ILD  HNASGVA GKR++P
Sbjct: 42 VSTKNNWNKDIIDVGQTRRESRVGENPILDVMHNASGVASGKRLFP 87

[Close]

BLAST of IVF0003758 vs. NCBI nr
Match: TYK11142.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 59.7 bits (143), Expect = 1.17e-07
Identity = 30/44 (68.18%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 38 TTRNKGFPDAKKDVDTKNVGNKDTLDAGQTSHENRIEENSILDA 81
          +TRN+ FPDAKK+V TKNVGNK  LD GQT  E+RI EN I DA
Sbjct: 23 STRNRDFPDAKKNVGTKNVGNKGILDVGQTRRESRIGENPIPDA 66

The following BLAST results are available for this feature:

BLAST of IVF0003758 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0003758 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BC59	2.9e-71	78.49	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TUY1	4.7e-29	62.70	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DIG2	3.0e-12	55.84	Ulp1-like peptidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G...	[more]
A0A5A7UXK9	5.6e-06	61.70	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CIL9	2.1e-05	68.18	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of IVF0003758 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ96903.1	1.42e-92	78.49	uncharacterized protein E5676_scaffold220G00020 [Cucumis melo var. makuwa]	[more]
KAA0045321.1	2.94e-37	62.70	uncharacterized protein E6C27_scaffold316G00930 [Cucumis melo var. makuwa]	[more]
KAA0040338.1	6.27e-16	55.84	Ulp1-like peptidase [Cucumis melo var. makuwa] >TYK23365.1 Ulp1-like peptidase [...	[more]
KAA0059764.1	2.41e-08	63.04	uncharacterized protein E6C27_scaffold108G00180 [Cucumis melo var. makuwa]	[more]
TYK11142.1	1.17e-07	68.18	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0003758 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 117..137
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0003758.2	IVF0003758.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding