IVF0003755 (gene) Melon (IVF77) v1

Overview
NameIVF0003755
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr02: 10567814 .. 10568011 (-)
RNA-Seq ExpressionIVF0003755
SyntenyIVF0003755
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCATCGAGCAGCAAGATAATGAGAATTTGATCAATGCATGGAGGAGATTTAAAAGGATGATCAAGAGATGCCCTCACCACAACATCCCTAGATGCATTTTGATGGAGCAGCTTTATTTTGGGCTGAGCAAGGATACCCAACAATCTATTGACGTTGTGTTGATAGGTGGGATACTGAGACCATTCTACCACTAG

mRNA sequence

ATGGCCATCGAGCAGCAAGATAATGAGAATTTGATCAATGCATGGAGGAGATTTAAAAGGATGATCAAGAGATGCCCTCACCACAACATCCCTAGATGCATTTTGATGGAGCAGCTTTATTTTGGGCTGAGCAAGGATACCCAACAATCTATTGACGTTGTGTTGATAGGTGGGATACTGAGACCATTCTACCACTAG

Coding sequence (CDS)

ATGGCCATCGAGCAGCAAGATAATGAGAATTTGATCAATGCATGGAGGAGATTTAAAAGGATGATCAAGAGATGCCCTCACCACAACATCCCTAGATGCATTTTGATGGAGCAGCTTTATTTTGGGCTGAGCAAGGATACCCAACAATCTATTGACGTTGTGTTGATAGGTGGGATACTGAGACCATTCTACCACTAG

Protein sequence

MAIEQQDNENLINAWRRFKRMIKRCPHHNIPRCILMEQLYFGLSKDTQQSIDVVLIGGILRPFYH
Homology
BLAST of IVF0003755 vs. ExPASy TrEMBL
Match: A0A5D3BFN1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00480 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 8.1e-31
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0

Query: 1  MAIEQQDNENLINAWRRFKRMIKRCPHHNIPRCILMEQLYFGLSKDTQQSIDVVLIGGIL 60
          MAIEQQDNENLINAWRRFKRMIKRCPHHNIPRCILMEQLYFGLSKDTQQSIDVVLIGGIL
Sbjct: 17 MAIEQQDNENLINAWRRFKRMIKRCPHHNIPRCILMEQLYFGLSKDTQQSIDVVLIGGIL 76

Query: 61 RPFYH 66
          RPFYH
Sbjct: 77 RPFYH 81

BLAST of IVF0003755 vs. ExPASy TrEMBL
Match: A0A5D3CC26 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00270 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.1e-18
Identity = 43/65 (66.15%), Postives = 52/65 (80.00%), Query Frame = 0

Query: 1  MAIEQQDNENLINAWRRFKRMIKRCPHHNIPRCILMEQLYFGLSKDTQQSIDVVLIGGIL 60
          M  EQ+D ENLI+ W+RFKRMIKRCPHH IP C+LMEQ YFGLSK+T QS ++V  GG+L
Sbjct: 1  MTFEQRDRENLIDVWKRFKRMIKRCPHHCIPECVLMEQFYFGLSKNTLQSANIVFTGGML 60

Query: 61 RPFYH 66
          R  Y+
Sbjct: 61 RSSYN 65

BLAST of IVF0003755 vs. ExPASy TrEMBL
Match: A0A5D3DEY4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold494G00470 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.8e-14
Identity = 38/60 (63.33%), Postives = 47/60 (78.33%), Query Frame = 0

Query: 5  QQDNENLINAWRRFKRMIKRCPHHNIPRCILMEQLYFGLSKDTQQSIDVVLIGGILRPFY 64
          ++D+ENLI+AWR+ K MIKRC HH+I  C+L EQ YFGLSKDTQQ +D V  GG+LR  Y
Sbjct: 12 KRDSENLIDAWRKLKGMIKRCSHHSILGCVLTEQFYFGLSKDTQQFVDAVFTGGMLRSSY 71

BLAST of IVF0003755 vs. ExPASy TrEMBL
Match: A0A5D3D677 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold368G00040 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 6.8e-14
Identity = 36/57 (63.16%), Postives = 44/57 (77.19%), Query Frame = 0

Query: 1  MAIEQQDNENLINAWRRFKRMIKRCPHHNIPRCILMEQLYFGLSKDTQQSIDVVLIG 58
          M  EQ+D++NLI+ W RFKR +KRCPHH I  C+LMEQ YFGLS+DTQQS D +  G
Sbjct: 1  MTFEQRDSKNLIDVWTRFKRKVKRCPHHCILECVLMEQFYFGLSEDTQQSADTMFTG 57

BLAST of IVF0003755 vs. ExPASy TrEMBL
Match: A0A5A7TI80 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00180 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.4e-13
Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 0

Query: 5  QQDNENLINAWRRFKRMIKRCPHHNIPRCILMEQLYFGLSKDTQQSIDVVLIGGILRPFY 64
          ++D+ENLI+AWR+ K MIKRC HH+I  C+  EQ YFGLSKDT+Q +D V  GG+LR  Y
Sbjct: 12 KRDSENLIDAWRKLKGMIKRCSHHSILGCVPTEQFYFGLSKDTRQFVDAVFTGGMLRSSY 71

BLAST of IVF0003755 vs. NCBI nr
Match: TYJ96998.1 (hypothetical protein E5676_scaffold506G00480 [Cucumis melo var. makuwa])

HSP 1 Score: 144 bits (363), Expect = 2.48e-43
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0

Query: 1  MAIEQQDNENLINAWRRFKRMIKRCPHHNIPRCILMEQLYFGLSKDTQQSIDVVLIGGIL 60
          MAIEQQDNENLINAWRRFKRMIKRCPHHNIPRCILMEQLYFGLSKDTQQSIDVVLIGGIL
Sbjct: 17 MAIEQQDNENLINAWRRFKRMIKRCPHHNIPRCILMEQLYFGLSKDTQQSIDVVLIGGIL 76

Query: 61 RPFYH 65
          RPFYH
Sbjct: 77 RPFYH 81

BLAST of IVF0003755 vs. NCBI nr
Match: KAA0048713.1 (hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa] >TYK07916.1 hypothetical protein E5676_scaffold265G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 103 bits (256), Expect = 3.20e-24
Identity = 43/65 (66.15%), Postives = 52/65 (80.00%), Query Frame = 0

Query: 1  MAIEQQDNENLINAWRRFKRMIKRCPHHNIPRCILMEQLYFGLSKDTQQSIDVVLIGGIL 60
          M  EQ+D ENLI+ W+RFKRMIKRCPHH IP C+LMEQ YFGLSK+T QS ++V  GG+L
Sbjct: 1  MTFEQRDRENLIDVWKRFKRMIKRCPHHCIPECVLMEQFYFGLSKNTLQSANIVFTGGML 60

Query: 61 RPFYH 65
          R  Y+
Sbjct: 61 RSSYN 65

BLAST of IVF0003755 vs. NCBI nr
Match: TYK21909.1 (hypothetical protein E5676_scaffold494G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 90.1 bits (222), Expect = 9.49e-22
Identity = 38/60 (63.33%), Postives = 47/60 (78.33%), Query Frame = 0

Query: 5  QQDNENLINAWRRFKRMIKRCPHHNIPRCILMEQLYFGLSKDTQQSIDVVLIGGILRPFY 64
          ++D+ENLI+AWR+ K MIKRC HH+I  C+L EQ YFGLSKDTQQ +D V  GG+LR  Y
Sbjct: 12 KRDSENLIDAWRKLKGMIKRCSHHSILGCVLTEQFYFGLSKDTQQFVDAVFTGGMLRSSY 71

BLAST of IVF0003755 vs. NCBI nr
Match: KAA0041115.1 (hypothetical protein E6C27_scaffold128G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 4.50e-20
Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 0

Query: 5  QQDNENLINAWRRFKRMIKRCPHHNIPRCILMEQLYFGLSKDTQQSIDVVLIGGILRPFY 64
          ++D+ENLI+AWR+ K MIKRC HH+I  C+  EQ YFGLSKDT+Q +D V  GG+LR  Y
Sbjct: 12 KRDSENLIDAWRKLKGMIKRCSHHSILGCVPTEQFYFGLSKDTRQFVDAVFTGGMLRSSY 71

BLAST of IVF0003755 vs. NCBI nr
Match: KAA0049658.1 (uncharacterized protein E6C27_scaffold163G001290 [Cucumis melo var. makuwa] >TYK19035.1 uncharacterized protein E5676_scaffold368G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 1.02e-19
Identity = 36/57 (63.16%), Postives = 44/57 (77.19%), Query Frame = 0

Query: 1  MAIEQQDNENLINAWRRFKRMIKRCPHHNIPRCILMEQLYFGLSKDTQQSIDVVLIG 57
          M  EQ+D++NLI+ W RFKR +KRCPHH I  C+LMEQ YFGLS+DTQQS D +  G
Sbjct: 1  MTFEQRDSKNLIDVWTRFKRKVKRCPHHCILECVLMEQFYFGLSEDTQQSADTMFTG 57

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BFN18.1e-31100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CC262.1e-1866.15Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DEY41.8e-1463.33Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3D6776.8e-1463.16Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TI803.4e-1360.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
TYJ96998.12.48e-43100.00hypothetical protein E5676_scaffold506G00480 [Cucumis melo var. makuwa][more]
KAA0048713.13.20e-2466.15hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa] >TYK07916... [more]
TYK21909.19.49e-2263.33hypothetical protein E5676_scaffold494G00470 [Cucumis melo var. makuwa][more]
KAA0041115.14.50e-2060.00hypothetical protein E6C27_scaffold128G00180 [Cucumis melo var. makuwa][more]
KAA0049658.11.02e-1963.16uncharacterized protein E6C27_scaffold163G001290 [Cucumis melo var. makuwa] >TYK... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0003755.2IVF0003755.2mRNA