IVF0003605 (gene) Melon (IVF77) v1

Overview


Name	IVF0003605
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Integrase catalytic domain-containing protein
Location	chr12: 11337548 .. 11337910 (+)
RNA-Seq Expression	IVF0003605
Synteny	IVF0003605

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAATTGCTCGTGAAGTACAATATAACTCATAAAATAGTTACCGTCTACCATCCTCAAACAAATGGTTAGGCGGAAGTGTCCAATAGGGAAATCAAGAAGATATTGGAGAAAATGGTAAATTCATCCTACAAGGACTGGGCGGATCACCTAGATTCTATGTTATGGACATATCATACCGCGTATAAGACACCCCTTGGAATGTCTCCATACGTGTTAGTCTTTGGAAAAGCATGCCATTTACCACTAGAGGTTGAACACAAGGCGTTAAGAGCATGTAAAAAGTTAAACTTTGATCATAATGCCACAGGTGAGGCTAGGTTACTACAACAGAATGAGCTTCAAGAGTGGCGTTCTTAA

mRNA sequence

ATGGCCAAATTGCTCGTGAAGTACAATATAACTCATAAAATAGTTACCAAGATATTGGAGAAAATGGTAAATTCATCCTACAAGGACTGGGCGGATCACCTAGATTCTATGTTATGGACATATCATACCGCGTATAAGACACCCCTTGGAATGTCTCCATACGTGTTAGTCTTTGGAAAAGCATGCCATTTACCACTAGAGGTTGAACACAAGGCGTTAAGAGCATGTAAAAAGTTAAACTTTGATCATAATGCCACAGGTGAGGCTAGGTTACTACAACAGAATGAGCTTCAAGAGTGGCGTTCTTAA

Coding sequence (CDS)

ATGGCCAAATTGCTCGTGAAGTACAATATAACTCATAAAATAGTTACCAAGATATTGGAGAAAATGGTAAATTCATCCTACAAGGACTGGGCGGATCACCTAGATTCTATGTTATGGACATATCATACCGCGTATAAGACACCCCTTGGAATGTCTCCATACGTGTTAGTCTTTGGAAAAGCATGCCATTTACCACTAGAGGTTGAACACAAGGCGTTAAGAGCATGTAAAAAGTTAAACTTTGATCATAATGCCACAGGTGAGGCTAGGTTACTACAACAGAATGAGCTTCAAGAGTGGCGTTCTTAA

Protein sequence

MAKLLVKYNITHKIVTKILEKMVNSSYKDWADHLDSMLWTYHTAYKTPLGMSPYVLVFGKACHLPLEVEHKALRACKKLNFDHNATGEARLLQQNELQEWRS

Homology

[Close]

BLAST of IVF0003605 vs. ExPASy TrEMBL
Match: A0A5A7SWL5 (RT_RNaseH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G00490 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.5e-44
Identity = 88/99 (88.89%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 4   LLVKYNITHKIVTKILEKMVNSSYKDWADHLDSMLWTYHTAYKTPLGMSPYVLVFGKACH 63
           L +K  ++++ + KILEKMVNSSYKDWADHLDSMLWTYHTAYKTPLGMSPYVLVFGKACH
Sbjct: 133 LCLKAEVSNREIKKILEKMVNSSYKDWADHLDSMLWTYHTAYKTPLGMSPYVLVFGKACH 192

Query: 64  LPLEVEHKALRACKKLNFDHNATGEARLLQQNELQEWRS 103
           LPLEVEHKALRACKKLNFDHNATGEARLLQQNELQEWRS
Sbjct: 193 LPLEVEHKALRACKKLNFDHNATGEARLLQQNELQEWRS 231

[Close]

BLAST of IVF0003605 vs. ExPASy TrEMBL
Match: A0A5D3DQB0 (RT_RNaseH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold862G00140 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 4.5e-44
Identity = 86/93 (92.47%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 10  ITHKIVTKILEKMVNSSYKDWADHLDSMLWTYHTAYKTPLGMSPYVLVFGKACHLPLEVE 69
           ++++ + KILEKMVNSSYKDWADHLDSMLWTYHTAYKTPLGMSPYVLVFGKACHLPLEVE
Sbjct: 127 VSNREIKKILEKMVNSSYKDWADHLDSMLWTYHTAYKTPLGMSPYVLVFGKACHLPLEVE 186

Query: 70  HKALRACKKLNFDHNATGEARLLQQNELQEWRS 103
           HKALRACKKLNFDHNATGEARLLQQNELQEWRS
Sbjct: 187 HKALRACKKLNFDHNATGEARLLQQNELQEWRS 219

[Close]

BLAST of IVF0003605 vs. ExPASy TrEMBL
Match: A0A5A7T814 (Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G002370 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.2e-34
Identity = 78/120 (65.00%), Postives = 85/120 (70.83%), Query Frame = 0


Query: 1   MAKLLVKYNITHKIVT------------------KILEKMVNSSYKDWADHLDSMLWTYH 60
           MAKL VKYNITHK+ T                  KILEK+VNSS KDW DHLDS LWTY 
Sbjct: 1   MAKLFVKYNITHKVATTYHSQTNGQVEVSNTKIKKILEKVVNSSCKDWTDHLDSTLWTYR 60

Query: 61  TAYKTPLGMSPYVLVFGKACHLPLEVEHKALRACKKLNFDHNATGEARLLQQNELQEWRS 103
           TAYKTPLG+SPY LVFGK CHLPL++EHK L ACKKLNF++N  GEA LLQ NE QE  S
Sbjct: 61  TAYKTPLGISPYALVFGKPCHLPLKLEHKTLWACKKLNFEYNVAGEAMLLQLNEFQECHS 120

[Close]

BLAST of IVF0003605 vs. ExPASy TrEMBL
Match: A0A5D3BD35 (Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00990 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.2e-34
Identity = 78/120 (65.00%), Postives = 85/120 (70.83%), Query Frame = 0


Query: 1   MAKLLVKYNITHKIVT------------------KILEKMVNSSYKDWADHLDSMLWTYH 60
           MAKL VKYNITHK+ T                  KILEK+VNSS KDW DHLDS LWTY 
Sbjct: 1   MAKLFVKYNITHKVATTYHSQTNGQVEVSNTKIKKILEKVVNSSCKDWTDHLDSTLWTYR 60

Query: 61  TAYKTPLGMSPYVLVFGKACHLPLEVEHKALRACKKLNFDHNATGEARLLQQNELQEWRS 103
           TAYKTPLG+SPY LVFGK CHLPL++EHK L ACKKLNF++N  GEA LLQ NE QE  S
Sbjct: 61  TAYKTPLGISPYALVFGKPCHLPLKLEHKTLWACKKLNFEYNVAGEAMLLQLNEFQECHS 120

[Close]

BLAST of IVF0003605 vs. ExPASy TrEMBL
Match: A0A5A7UE09 (Rve domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G001420 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 3.4e-28
Identity = 64/93 (68.82%), Postives = 74/93 (79.57%), Query Frame = 0


Query: 10  ITHKIVTKILEKMVNSSYKDWADHLDSMLWTYHTAYKTPLGMSPYVLVFGKACHLPLEVE 69
           ++++ + KILEK+VNSS+KD ADHLDS  W Y  AYKTP+ MSPY LVF KA HLPLE E
Sbjct: 82  LSNRKIKKILEKVVNSSHKDCADHLDSTFWAYCIAYKTPIRMSPYTLVFKKAWHLPLEFE 141

Query: 70  HKALRACKKLNFDHNATGEARLLQQNELQEWRS 103
           HK L +CKKLNFDHN  GEARLL+ NELQEW S
Sbjct: 142 HKELWSCKKLNFDHNTAGEARLLKLNELQEWCS 174

[Close]

BLAST of IVF0003605 vs. NCBI nr
Match: KAA0035430.1 (uncharacterized protein E6C27_scaffold285G00490 [Cucumis melo var. makuwa])

HSP 1 Score: 187 bits (474), Expect = 1.53e-57
Identity = 88/99 (88.89%), Postives = 94/99 (94.95%), Query Frame = 0


Query: 4   LLVKYNITHKIVTKILEKMVNSSYKDWADHLDSMLWTYHTAYKTPLGMSPYVLVFGKACH 63
           L +K  ++++ + KILEKMVNSSYKDWADHLDSMLWTYHTAYKTPLGMSPYVLVFGKACH
Sbjct: 133 LCLKAEVSNREIKKILEKMVNSSYKDWADHLDSMLWTYHTAYKTPLGMSPYVLVFGKACH 192

Query: 64  LPLEVEHKALRACKKLNFDHNATGEARLLQQNELQEWRS 102
           LPLEVEHKALRACKKLNFDHNATGEARLLQQNELQEWRS
Sbjct: 193 LPLEVEHKALRACKKLNFDHNATGEARLLQQNELQEWRS 231

[Close]

BLAST of IVF0003605 vs. NCBI nr
Match: TYK25722.1 (uncharacterized protein E5676_scaffold862G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 185 bits (470), Expect = 4.28e-57
Identity = 86/93 (92.47%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 10  ITHKIVTKILEKMVNSSYKDWADHLDSMLWTYHTAYKTPLGMSPYVLVFGKACHLPLEVE 69
           ++++ + KILEKMVNSSYKDWADHLDSMLWTYHTAYKTPLGMSPYVLVFGKACHLPLEVE
Sbjct: 127 VSNREIKKILEKMVNSSYKDWADHLDSMLWTYHTAYKTPLGMSPYVLVFGKACHLPLEVE 186

Query: 70  HKALRACKKLNFDHNATGEARLLQQNELQEWRS 102
           HKALRACKKLNFDHNATGEARLLQQNELQEWRS
Sbjct: 187 HKALRACKKLNFDHNATGEARLLQQNELQEWRS 219

[Close]

BLAST of IVF0003605 vs. NCBI nr
Match: KAA0038356.1 (pol [Cucumis melo var. makuwa])

HSP 1 Score: 153 bits (386), Expect = 1.62e-43
Identity = 78/120 (65.00%), Postives = 85/120 (70.83%), Query Frame = 0


Query: 1   MAKLLVKYNITHKIVT------------------KILEKMVNSSYKDWADHLDSMLWTYH 60
           MAKL VKYNITHK+ T                  KILEK+VNSS KDW DHLDS LWTY 
Sbjct: 1   MAKLFVKYNITHKVATTYHSQTNGQVEVSNTKIKKILEKVVNSSCKDWTDHLDSTLWTYR 60

Query: 61  TAYKTPLGMSPYVLVFGKACHLPLEVEHKALRACKKLNFDHNATGEARLLQQNELQEWRS 102
           TAYKTPLG+SPY LVFGK CHLPL++EHK L ACKKLNF++N  GEA LLQ NE QE  S
Sbjct: 61  TAYKTPLGISPYALVFGKPCHLPLKLEHKTLWACKKLNFEYNVAGEAMLLQLNEFQECHS 120

[Close]

BLAST of IVF0003605 vs. NCBI nr
Match: TYJ97037.1 (pol [Cucumis melo var. makuwa])

HSP 1 Score: 153 bits (386), Expect = 4.25e-42
Identity = 78/120 (65.00%), Postives = 85/120 (70.83%), Query Frame = 0


Query: 1   MAKLLVKYNITHKIVT------------------KILEKMVNSSYKDWADHLDSMLWTYH 60
           MAKL VKYNITHK+ T                  KILEK+VNSS KDW DHLDS LWTY 
Sbjct: 1   MAKLFVKYNITHKVATTYHSQTNGQVEVSNTKIKKILEKVVNSSCKDWTDHLDSTLWTYR 60

Query: 61  TAYKTPLGMSPYVLVFGKACHLPLEVEHKALRACKKLNFDHNATGEARLLQQNELQEWRS 102
           TAYKTPLG+SPY LVFGK CHLPL++EHK L ACKKLNF++N  GEA LLQ NE QE  S
Sbjct: 61  TAYKTPLGISPYALVFGKPCHLPLKLEHKTLWACKKLNFEYNVAGEAMLLQLNEFQECHS 120

[Close]

BLAST of IVF0003605 vs. NCBI nr
Match: KAA0040818.1 (Pol polyprotein [Cucumis melo var. makuwa] >TYK17795.1 Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 130 bits (327), Expect = 1.13e-36
Identity = 68/120 (56.67%), Postives = 79/120 (65.83%), Query Frame = 0


Query: 1   MAKLLVKYNITHKIVT------------------KILEKMVNSSYKDWADHLDSMLWTYH 60
           MAKLLVKYNI H++ T                  KILEKMV    KDWADHL S LWTY 
Sbjct: 1   MAKLLVKYNINHRVATAYHPQTNGQAEVSNREMKKILEKMVTFFRKDWADHLGSTLWTYR 60

Query: 61  TAYKTPLGMSPYVLVFGKACHLPLEVEHKALRACKKLNFDHNATGEARLLQQNELQEWRS 102
             YKTPL MS Y L FGKAC+LP+++EHK L  CKKLNFD++   EA+LLQ +E Q+WRS
Sbjct: 61  NKYKTPLEMSRYALDFGKACNLPIKLEHKVLWVCKKLNFDNHDIEEAKLLQLHEFQQWRS 120

The following BLAST results are available for this feature:

BLAST of IVF0003605 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0003605 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SWL5	1.5e-44	88.89	RT_RNaseH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A5D3DQB0	4.5e-44	92.47	RT_RNaseH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5A7T814	3.2e-34	65.00	Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G002370 PE=4 SV=1	[more]
A0A5D3BD35	3.2e-34	65.00	Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00990 PE=4 SV=1	[more]
A0A5A7UE09	3.4e-28	68.82	Rve domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]

BLAST of IVF0003605 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035430.1	1.53e-57	88.89	uncharacterized protein E6C27_scaffold285G00490 [Cucumis melo var. makuwa]	[more]
TYK25722.1	4.28e-57	92.47	uncharacterized protein E5676_scaffold862G00140 [Cucumis melo var. makuwa]	[more]
KAA0038356.1	1.62e-43	65.00	pol [Cucumis melo var. makuwa]	[more]
TYJ97037.1	4.25e-42	65.00	pol [Cucumis melo var. makuwa]	[more]
KAA0040818.1	1.13e-36	56.67	Pol polyprotein [Cucumis melo var. makuwa] >TYK17795.1 Pol polyprotein [Cucumis ...	[more]

BLAST of IVF0003605 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 8..98 e-value: 1.3E-12 score: 49.4
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 11..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0003605.1	IVF0003605.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding