Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGTAGCAAGATATAATATTGAGAAGTTTGATGGTAAGGAAGATTTTACGTTTTGGAAAGCAAAGATCAAAGCTATCATTGACCAACAAAAGACATTCAAAGTTCTCTGGATCCTAAAAAGCTACTTGTAACAAATGACTTACAAGAAGAAAGAAACTATGAAAAATTCAACTTATGTTTCTATAATTCTCAACCTACGTGGCAATGTTCTAAGGAAGGTCATTGATAAAGAAACAACTTATGGAATGTGGAAGAAGTTAGATGAACTTTATCAGTTCAAAGACTTACCAAACTGTGTATACATGAGGGAAAGGTTCTTTACCTTTAAAATGGATAGCAACAAGTCATTGATAGAAAATCTTGGAGAGTTCAAAAAGTTATCGACTGATTTCGAGGACTTGGAAAACAAGATTGGTGATGAAAATGAATCATTCATTTTGCTAAACCACTTCCAAATGCATTTAAAGAAGTCAAAATGGCTCTCAAATATGGAAATTGGAAGCCAAGAAATCACCATCGATGATATTATTCCAGGGATAAAAACCAGAGAACTAGAGTTTAATACACAAAGAAGAGATAAAGTCAATACTGAAGGATTGTTCTCAAAGGGTAAGAGCAAAAACAACTATAAAAGAAACTAA
mRNA sequence
ATGGCAGTAGCAAGATATAATATTGAGAAGTTTGATGGTAAGGAAGATTTTACGTTTTGGAAAGCAAAGATCAAAGCTATCATTGACCAACAAAAGACATTCAAAAAGAAAGAAACTATGAAAAATTCAACTTATGTTTCTATAATTCTCAACCTACGTGGCAATGTTCTAAGGAAGGTCATTGATAAAGAAACAACTTATGGAATGTGGAAGAAGTTAGATGAACTTTATCAGTTCAAAGACTTACCAAACTGTGTATACATGAGGGAAAGGTTCTTTACCTTTAAAATGGATAGCAACAAGTCATTGATAGAAAATCTTGGAGAGTTCAAAAAGTTATCGACTGATTTCGAGGACTTGGAAAACAAGATTGGTGATGAAAATGAATCATTCATTTTGCTAAACCACTTCCAAATGCATTTAAAGAAGTCAAAATGGCTCTCAAATATGGAAATTGGAAGCCAAGAAATCACCATCGATGATATTATTCCAGGGATAAAAACCAGAGAACTAGAGTTTAATACACAAAGAAGAGATAAAGTCAATACTGAAGGATTGTTCTCAAAGGGTAAGAGCAAAAACAACTATAAAAGAAACTAA
Coding sequence (CDS)
ATGGCAGTAGCAAGATATAATATTGAGAAGTTTGATGGTAAGGAAGATTTTACGTTTTGGAAAGCAAAGATCAAAGCTATCATTGACCAACAAAAGACATTCAAAAAGAAAGAAACTATGAAAAATTCAACTTATGTTTCTATAATTCTCAACCTACGTGGCAATGTTCTAAGGAAGGTCATTGATAAAGAAACAACTTATGGAATGTGGAAGAAGTTAGATGAACTTTATCAGTTCAAAGACTTACCAAACTGTGTATACATGAGGGAAAGGTTCTTTACCTTTAAAATGGATAGCAACAAGTCATTGATAGAAAATCTTGGAGAGTTCAAAAAGTTATCGACTGATTTCGAGGACTTGGAAAACAAGATTGGTGATGAAAATGAATCATTCATTTTGCTAAACCACTTCCAAATGCATTTAAAGAAGTCAAAATGGCTCTCAAATATGGAAATTGGAAGCCAAGAAATCACCATCGATGATATTATTCCAGGGATAAAAACCAGAGAACTAGAGTTTAATACACAAAGAAGAGATAAAGTCAATACTGAAGGATTGTTCTCAAAGGGTAAGAGCAAAAACAACTATAAAAGAAACTAA
Protein sequence
MAVARYNIEKFDGKEDFTFWKAKIKAIIDQQKTFKKKETMKNSTYVSIILNLRGNVLRKVIDKETTYGMWKKLDELYQFKDLPNCVYMRERFFTFKMDSNKSLIENLGEFKKLSTDFEDLENKIGDENESFILLNHFQMHLKKSKWLSNMEIGSQEITIDDIIPGIKTRELEFNTQRRDKVNTEGLFSKGKSKNNYKRN
Homology
BLAST of IVF0003537 vs. ExPASy Swiss-Prot
Match:
P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)
HSP 1 Score: 77.0 bits (188), Expect = 2.6e-13
Identity = 58/222 (26.13%), Postives = 107/222 (48.20%), Query Frame = 0
Query: 1 MAVARYNIEKFDGKEDFTFWKAKIKAIIDQQKTF-------KKKETMKNSTYV------- 60
M+ +Y + KF+G F+ W+ +++ ++ QQ KK +TMK +
Sbjct: 1 MSGVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAA 60
Query: 61 -SIILNLRGNVLRKVIDKETTYGMWKKLDELYQFKDLPNCVYMRERFFTFKMDSNKSLIE 120
+I L+L +V+ +ID++T G+W +L+ LY K L N +Y++++ + M + +
Sbjct: 61 SAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLS 120
Query: 121 NLGEFKKLSTDFEDLENKIGDENESFILLNHFQMHLKKSKWLSNMEIGSQEITIDDIIPG 180
+L F L T +L KI +E+++ +LLN + + + G I + D+
Sbjct: 121 HLNVFNGLITQLANLGVKIEEEDKAILLLN--SLPSSYDNLATTILHGKTTIELKDV--- 180
Query: 181 IKTRELEFNTQRRDKVNTEG--LFSKG------KSKNNYKRN 200
T L N + R K +G L ++G +S NNY R+
Sbjct: 181 --TSALLLNEKMRKKPENQGQALITEGRGRSYQRSSNNYGRS 215
BLAST of IVF0003537 vs. ExPASy TrEMBL
Match:
A0A5D3CAI4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1503G00330 PE=4 SV=1)
HSP 1 Score: 157.5 bits (397), Expect = 5.7e-35
Identity = 82/122 (67.21%), Postives = 95/122 (77.87%), Query Frame = 0
Query: 69 MWKKLDELYQFKDLPNCVYMRERFFTFKMDSNKSLIENLGEFKKLSTDFEDLENKIGDEN 128
MWKKLDELYQ KDLPN Y+RERFFTFKMD NKSLIENLGEFKKLS+DF++L +KIGDEN
Sbjct: 1 MWKKLDELYQSKDLPNRAYVRERFFTFKMDDNKSLIENLGEFKKLSSDFKELGDKIGDEN 60
Query: 129 ESFILLNHFQMHLKKSKWLSNMEIGSQEITIDDIIPGIKTRELEFNTQRRDKVNTEGLFS 188
ESFILLN K+ K + G Q+IT +I I+TREL+ N+QRRD+ N EGLFS
Sbjct: 61 ESFILLNSLPEAYKEVKMA--LRYGRQKITTGGVISAIRTRELDLNSQRRDQSNGEGLFS 120
Query: 189 KG 191
KG
Sbjct: 121 KG 120
BLAST of IVF0003537 vs. ExPASy TrEMBL
Match:
A0A2P5CTT8 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_273130 PE=4 SV=1)
HSP 1 Score: 144.4 bits (363), Expect = 5.0e-31
Identity = 79/212 (37.26%), Postives = 126/212 (59.43%), Query Frame = 0
Query: 1 MAVARYNIEKFDGKEDFTFWKAKIKAIIDQQKTFK---------------KKETMKNSTY 60
M ++ IEKFDGK DF WK K+KA++ QQK K +KE + + Y
Sbjct: 1 MGTSKIEIEKFDGKGDFNMWKKKMKAVLVQQKCAKVLGDASGLPETMKPSEKEELLETAY 60
Query: 61 VSIILNLRGNVLRKVIDKETTYGMWKKLDELYQFKDLPNCVYMRERFFTFKMDSNKSLIE 120
+ILNL NVLR+V +++T +W KLD LY K L N +Y++E+ F FKMDS KSL +
Sbjct: 61 SLLILNLADNVLRQVDEQDTAAKVWSKLDSLYLTKTLSNKIYLKEQLFGFKMDSTKSLED 120
Query: 121 NLGEFKKLSTDFEDLENKIGDENESFILLNHFQMHLKKSKWLSNMEIGSQEITIDDIIPG 180
NL +FK+++ +++ KI DEN++ I+LN K K S ++ G + +++DD++
Sbjct: 121 NLDDFKRITVSLANIDEKINDENQAIIILNSLPESYKDLK--STIKYGRESLSLDDVLRA 180
Query: 181 IKTRELEFNTQRRDKVNTEGLFSKGKSKNNYK 198
+++ +LE ++R N EGL +G+++ K
Sbjct: 181 LRSHDLEVKIEKRS--NGEGLQVRGRTQKRDK 208
BLAST of IVF0003537 vs. ExPASy TrEMBL
Match:
A0A5D3BAU2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00010 PE=4 SV=1)
HSP 1 Score: 144.1 bits (362), Expect = 6.5e-31
Identity = 70/97 (72.16%), Postives = 83/97 (85.57%), Query Frame = 0
Query: 33 TFKKKETMKNSTYVSIILNLRGNVLRKVIDKETTYGMWKKLDELYQFKDLPNCVYMRERF 92
T ++KETM+N Y +I+LNL NVL++VI +ETTYGMWKKL+ELYQ KDLPN YMRERF
Sbjct: 2 TQEEKETMENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRERF 61
Query: 93 FTFKMDSNKSLIENLGEFKKLSTDFEDLENKIGDENE 130
T+KMD NKSLIENLGEFKKLS DF +L++KIGDENE
Sbjct: 62 LTYKMDDNKSLIENLGEFKKLSLDFRELKDKIGDENE 98
BLAST of IVF0003537 vs. ExPASy TrEMBL
Match:
A0A5A7U6R2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G00930 PE=4 SV=1)
HSP 1 Score: 142.5 bits (358), Expect = 1.9e-30
Identity = 76/212 (35.85%), Postives = 121/212 (57.08%), Query Frame = 0
Query: 1 MAVARYNIEKFDGKEDFTFWKAKIKAIIDQQKTFK---------------KKETMKNSTY 60
M ++ IEKFDG DFT W +I AI+ QK K ++ET++ Y
Sbjct: 1 MTTTKFEIEKFDGNGDFTLWTKRITAILGSQKALKALEDPKELPATLTKSERETLEEVAY 60
Query: 61 VSIILNLRGNVLRKVIDKETTYGMWKKLDELYQFKDLPNCVYMRERFFTFKMDSNKSLIE 120
++I+N+ NVLR+VI++ T + W+KL LY+ KDLPN ++++E+ F+FK + NK+L E
Sbjct: 61 STLIMNITDNVLRQVIEETTAFATWEKLKSLYEKKDLPNKMFIKEKLFSFKKNQNKNLDE 120
Query: 121 NLGEFKKLSTDFEDLENKIGDENESFILLNHFQMHLKKSKWLSNMEIGSQEITIDDIIPG 180
NL EFKKL+ K+G ENE+ IL+N K+ K + ++ G + IT++ +I
Sbjct: 121 NLDEFKKLTNALNQTGEKLGAENEAAILINSIHDTYKEVK--TGLKYGRETITVNSVITT 180
Query: 181 IKTRELEFNTQRRDKVNTEGLFSKGKSKNNYK 198
+K++ELE T+ + EG + Y+
Sbjct: 181 LKSKELELKTENKTSNAAEGKNFRRDENRRYR 210
BLAST of IVF0003537 vs. ExPASy TrEMBL
Match:
A0A5C7GPM1 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_027990 PE=4 SV=1)
HSP 1 Score: 141.0 bits (354), Expect = 5.5e-30
Identity = 78/204 (38.24%), Postives = 121/204 (59.31%), Query Frame = 0
Query: 5 RYNIEKFDGKEDFTFWKAKIKAIIDQQKTFK---------------KKETMKNSTYVSII 64
++ I+KFDG EDF W+ K+KA++ QQK K +K M +II
Sbjct: 83 KFEIDKFDGTEDFGIWRRKVKALLSQQKILKAIEGPDKLPDSLNDEQKSDMLEMALRTII 142
Query: 65 LNLRGNVLRKVIDKETTYGMWKKLDELYQFKDLPNCVYMRERFFTFKMDSNKSLIENLGE 124
LNL NVLR+V D+ T YG+W KL+ LY K L N +Y++ER F+FKMD++K L +NL E
Sbjct: 143 LNLSDNVLREVNDETTAYGVWNKLESLYMTKSLTNKIYLKERLFSFKMDASKGLDKNLDE 202
Query: 125 FKKLSTDFEDLEN--KIGDENESFILLNHFQMHLKKSKWLSNMEIGSQEITIDDIIPGIK 184
+KK++ + + + K+ DENE+ ILLN K K + ++ G +++++ I +K
Sbjct: 203 YKKMTIELANASDNEKLSDENEAIILLNSLPDSFKDVK--AAIKYGRTSLSLEECISALK 262
Query: 185 TRELEFNTQRRDKVNTEGLFSKGK 192
++ELE +++D N E LF G+
Sbjct: 263 SKELELKIEKKD--NGENLFVSGR 282
BLAST of IVF0003537 vs. NCBI nr
Match:
XP_038890043.1 (uncharacterized protein LOC120079747 [Benincasa hispida])
HSP 1 Score: 176 bits (447), Expect = 4.49e-52
Identity = 95/212 (44.81%), Postives = 134/212 (63.21%), Query Frame = 0
Query: 1 MAVARYNIEKFDGKEDFTFWKAKIKAIIDQQK---------------TFKKKETMKNSTY 60
MA RY IEKFD K DF WK KIK ++ QQK T +KET++ +
Sbjct: 1 MATTRYEIEKFDSKTDFELWKVKIKVVLGQQKALLAITDPAKYPETLTEAEKETIEVNAC 60
Query: 61 VSIILNLRGNVLRKVIDKETTYGMWKKLDELYQFKDLPNCVYMRERFFTFKMDSNKSLIE 120
+I+LN+ NVLR+VI++ T Y +W KL+E+Y KDL N ++RERFFT+KMD+ KSL +
Sbjct: 61 GTIVLNVTDNVLRQVINQPTAYALWNKLNEIYLNKDLSNKAFLRERFFTYKMDAAKSLTD 120
Query: 121 NLGEFKKLSTDFEDLENKIGDENESFILLNHFQMHLKKSKWLSNMEIGSQEITIDDIIPG 180
L EFK+LS++F + IG+ENE+FILLN K +K + ++ G + IT + II
Sbjct: 121 ILNEFKRLSSEFRSIGYNIGEENEAFILLNSLPESFKDAK--TAIKYGRERITTEAIISA 180
Query: 181 IKTRELEFNTQRRDKVNTEGLFSKGKSKNNYK 197
++ RELE ++ + EGLFSKGK+KN+ K
Sbjct: 181 VRVRELELQMSKKGQQEGEGLFSKGKNKNSRK 210
BLAST of IVF0003537 vs. NCBI nr
Match:
XP_038885928.1 (uncharacterized protein LOC120076236 [Benincasa hispida])
HSP 1 Score: 172 bits (436), Expect = 9.26e-50
Identity = 90/208 (43.27%), Postives = 130/208 (62.50%), Query Frame = 0
Query: 1 MAVARYNIEKFDGKEDFTFWKAKIKAIIDQQKT--------------FK-KKETMKNSTY 60
M RY IEKF+ K DF WKAKIK ++ +QK FK +KET++++ Y
Sbjct: 1 MTTTRYEIEKFEAKTDFELWKAKIKVVLRKQKALLAITDPAKYPKILFKAEKETIESNAY 60
Query: 61 VSIILNLRGNVLRKVIDKETTYGMWKKLDELYQFKDLPNCVYMRERFFTFKMDSNKSLIE 120
+I+LN+ +VLR+++D+ T Y +W KL+++Y KDLPN ++RERFFT+KMD KSL +
Sbjct: 61 GTIVLNVIDSVLRQIVDRPTAYALWNKLNDIYLNKDLPNKAFLRERFFTYKMDPAKSLTD 120
Query: 121 NLGEFKKLSTDFEDLENKIGDENESFILLNHFQMHLKKSKWLSNMEIGSQEITIDDIIPG 180
NL EFK LS+DF + + IG+ENE+FILLN K K + ++ G + IT II
Sbjct: 121 NLNEFKSLSSDFRSIGDNIGEENEAFILLNSLPETFKDVK--TALKYGRERITTYAIISA 180
Query: 181 IKTRELEFNTQRRDKVNTEGLFSKGKSK 193
+ +ELE ++D+ EG F KG +K
Sbjct: 181 VSVKELELQMTKKDQPRGEGFFPKGNNK 206
BLAST of IVF0003537 vs. NCBI nr
Match:
KAA0065687.1 (retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK08214.1 retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])
HSP 1 Score: 159 bits (402), Expect = 4.38e-45
Identity = 82/122 (67.21%), Postives = 95/122 (77.87%), Query Frame = 0
Query: 69 MWKKLDELYQFKDLPNCVYMRERFFTFKMDSNKSLIENLGEFKKLSTDFEDLENKIGDEN 128
MWKKLDELYQ KDLPN Y+RERFFTFKMD NKSLIENLGEFKKLS+DF++L +KIGDEN
Sbjct: 1 MWKKLDELYQSKDLPNRAYVRERFFTFKMDDNKSLIENLGEFKKLSSDFKELGDKIGDEN 60
Query: 129 ESFILLNHFQMHLKKSKWLSNMEIGSQEITIDDIIPGIKTRELEFNTQRRDKVNTEGLFS 188
ESFILLN K+ K + G Q+IT +I I+TREL+ N+QRRD+ N EGLFS
Sbjct: 61 ESFILLNSLPEAYKEVKMA--LRYGRQKITTGGVISAIRTRELDLNSQRRDQSNGEGLFS 120
Query: 189 KG 190
KG
Sbjct: 121 KG 120
BLAST of IVF0003537 vs. NCBI nr
Match:
XP_038887098.1 (uncharacterized protein LOC120077280 [Benincasa hispida])
HSP 1 Score: 157 bits (396), Expect = 2.63e-44
Identity = 83/188 (44.15%), Postives = 119/188 (63.30%), Query Frame = 0
Query: 1 MAVARYNIEKFDGKEDFTFWKAKIKAIIDQQKTF---------------KKKETMKNSTY 60
MA +Y IEKFD K DF KAKIKA++ QQK +KET++++ Y
Sbjct: 1 MATTKYEIEKFDEKIDFELRKAKIKAVLGQQKALLAITDPSKYPETLSEAEKETIESNAY 60
Query: 61 VSIILNLRGNVLRKVIDKETTYGMWKKLDELYQFKDLPNCVYMRERFFTFKMDSNKSLIE 120
+IILN+ +VLR+++D+ T Y +W KL+E+Y KD PN ++RERFFT+KMD KSL +
Sbjct: 61 GTIILNVTDSVLRQIMDQPTVYALWNKLNEIYLNKDFPNKNFLRERFFTYKMDPTKSLTD 120
Query: 121 NLGEFKKLSTDFEDLENKIGDENESFILLNHFQMHLKKSKWLSNMEIGSQEITIDDIIPG 173
NL EFK+LS++F + + IG+ENE+FIL N K K + ++ + ITID II
Sbjct: 121 NLNEFKRLSSEFRSIGDNIGEENEAFILFNSLPETFKDVK--TALKYSRKRITIDAIISA 180
BLAST of IVF0003537 vs. NCBI nr
Match:
XP_038880370.1 (uncharacterized protein LOC120072018 [Benincasa hispida])
HSP 1 Score: 150 bits (378), Expect = 3.60e-42
Identity = 79/173 (45.66%), Postives = 111/173 (64.16%), Query Frame = 0
Query: 1 MAVARYNIEKFDGKEDFTFWKAKIKAIIDQQKTF---------------KKKETMKNSTY 60
MA RY IEKFDGK DF KAKIKA++ QQKT KET++ + Y
Sbjct: 1 MATIRYEIEKFDGKIDFELQKAKIKAVLGQQKTLLAITDPTKYPETLSEADKETIELNAY 60
Query: 61 VSIILNLRGNVLRKVIDKETTYGMWKKLDELYQFKDLPNCVYMRERFFTFKMDSNKSLIE 120
+IILN+ ++LR+++D+ T Y +W KL+E+Y KDLPN + RERFFT+K+D+ KSL +
Sbjct: 61 GTIILNVTDSILRQIVDQPTAYALWNKLNEIYLNKDLPNKAFFRERFFTYKIDAAKSLTD 120
Query: 121 NLGEFKKLSTDFEDLENKIGDENESFILLNHFQMHLKKSKWLSNMEIGSQEIT 158
NL EFK+LS++F + + I +ENE+FILLN K K + ++ G + IT
Sbjct: 121 NLNEFKRLSSEFRSIRDNIREENEAFILLNSLPESFKDVKTI--LKYGRERIT 171
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
P10978 | 2.6e-13 | 26.13 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... | [more] |
Match Name | E-value | Identity | Description | |
A0A5D3CAI4 | 5.7e-35 | 67.21 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
A0A2P5CTT8 | 5.0e-31 | 37.26 | Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_273130 PE=4 SV... | [more] |
A0A5D3BAU2 | 6.5e-31 | 72.16 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
A0A5A7U6R2 | 1.9e-30 | 35.85 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
A0A5C7GPM1 | 5.5e-30 | 38.24 | Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_027990 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
XP_038890043.1 | 4.49e-52 | 44.81 | uncharacterized protein LOC120079747 [Benincasa hispida] | [more] |
XP_038885928.1 | 9.26e-50 | 43.27 | uncharacterized protein LOC120076236 [Benincasa hispida] | [more] |
KAA0065687.1 | 4.38e-45 | 67.21 | retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... | [more] |
XP_038887098.1 | 2.63e-44 | 44.15 | uncharacterized protein LOC120077280 [Benincasa hispida] | [more] |
XP_038880370.1 | 3.60e-42 | 45.66 | uncharacterized protein LOC120072018 [Benincasa hispida] | [more] |
Match Name | E-value | Identity | Description | |