IVF0003528 (gene) Melon (IVF77) v1

Overview
NameIVF0003528
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionImportin subunit beta-1
Locationchr09: 23585570 .. 23585821 (-)
RNA-Seq ExpressionIVF0003528
SyntenyIVF0003528
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATATGGGTGTGTTGAGTTGGGGTCCGGATTGCATCTTACAAGTCTTCACTCTCAGGACAACGGGAAGCTGTTCACTTCTAGTTGTCACTAACTCTTGCATCATCGTCATCATGAAAGCATTGCTAACTATTGCATTAGCAGCATCAAGTCGGGATCTTGTATGTCATGGTAGAAGTGGGAAGAGGGAGCGTCCATTAGCGCCCCCAGTTCGTTTGGCTTGGTCAGTTCCAATTGTATCTCTGACTTGA

mRNA sequence

ATGCATATGGGTGTGTTGAGTTGGGGTCCGGATTGCATCTTACAAGTCTTCACTCTCAGGACAACGGGAAGCTGTTCACTTCTAGTTGTCACTAACTCTTGCATCATCGTCATCATGAAAGCATTGCTAACTATTGCATTAGCAGCATCAAGTCGGGATCTTGTATGTCATGGTAGAAGTGGGAAGAGGGAGCGTCCATTAGCGCCCCCAGTTCGTTTGGCTTGGTCAGTTCCAATTGTATCTCTGACTTGA

Coding sequence (CDS)

ATGCATATGGGTGTGTTGAGTTGGGGTCCGGATTGCATCTTACAAGTCTTCACTCTCAGGACAACGGGAAGCTGTTCACTTCTAGTTGTCACTAACTCTTGCATCATCGTCATCATGAAAGCATTGCTAACTATTGCATTAGCAGCATCAAGTCGGGATCTTGTATGTCATGGTAGAAGTGGGAAGAGGGAGCGTCCATTAGCGCCCCCAGTTCGTTTGGCTTGGTCAGTTCCAATTGTATCTCTGACTTGA

Protein sequence

MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGRSGKRERPLAPPVRLAWSVPIVSLT
Homology
[Close]
BLAST of IVF0003528 vs. ExPASy TrEMBL
Match: A0A5A7TGL2 (Importin subunit beta-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00380 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.1e-37
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0 

Query: 1   MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGRS 60
           MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGRS
Sbjct: 865 MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGRS 924

Query: 61  GKRERPLAPPVRLAWSVPIVSLT 84
           GKRERPLAPPVRLAWSVPIVSLT
Sbjct: 925 GKRERPLAPPVRLAWSVPIVSLT 947

[Close]
BLAST of IVF0003528 vs. ExPASy TrEMBL
Match: A0A0A0KLW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139320 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.5e-37
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 0 

Query: 1  MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGRS 60
          MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGRS
Sbjct: 1  MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGRS 60

Query: 61 GKRERPLAPPVRLAWSVPIVSLT 84
          G+RERPLAPPVRLAWSVPIVSLT
Sbjct: 61 GRRERPLAPPVRLAWSVPIVSLT 83

[Close]
BLAST of IVF0003528 vs. NCBI nr
Match: KGN49854.1 (hypothetical protein Csa_000509 [Cucumis sativus])

HSP 1 Score: 164 bits (416), Expect = 4.59e-51
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 0 

Query: 1  MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGRS 60
          MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGRS
Sbjct: 1  MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGRS 60

Query: 61 GKRERPLAPPVRLAWSVPIVSLT 83
          G+RERPLAPPVRLAWSVPIVSLT
Sbjct: 61 GRRERPLAPPVRLAWSVPIVSLT 83

[Close]
BLAST of IVF0003528 vs. NCBI nr
Match: KAA0042542.1 (importin subunit beta-1 [Cucumis melo var. makuwa] >TYK05945.1 importin subunit beta-1 [Cucumis melo var. makuwa])

HSP 1 Score: 166 bits (419), Expect = 2.35e-45
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0 

Query: 1   MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGRS 60
           MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGRS
Sbjct: 865 MHMGVLSWGPDCILQVFTLRTTGSCSLLVVTNSCIIVIMKALLTIALAASSRDLVCHGRS 924

Query: 61  GKRERPLAPPVRLAWSVPIVSLT 83
           GKRERPLAPPVRLAWSVPIVSLT
Sbjct: 925 GKRERPLAPPVRLAWSVPIVSLT 947

The following BLAST results are available for this feature:
BLAST of IVF0003528 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0003528 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TGL21.1e-37100.00Importin subunit beta-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KLW12.5e-3798.80Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139320 PE=4 SV=1[more]
BLAST of IVF0003528 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49854.14.59e-5198.80hypothetical protein Csa_000509 [Cucumis sativus][more]
KAA0042542.12.35e-45100.00importin subunit beta-1 [Cucumis melo var. makuwa] >TYK05945.1 importin subunit ... [more]
BLAST of IVF0003528 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0003528.1IVF0003528.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006606 protein import into nucleus
cellular_component GO:0005737 cytoplasm
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0031267 small GTPase binding