IVF0003516 (gene) Melon (IVF77) v1

Overview
NameIVF0003516
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr01: 29495032 .. 29495970 (-)
RNA-Seq ExpressionIVF0003516
SyntenyIVF0003516
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAACGAGAGGGAGATTATTAGTCCTCTCCTTTACCATCACCACCACCACTCCCTCTCCTTTCTTTCTTCTTTCTCTCTCATTCCCATTATTTTCCCTAATTCTTCTTCTCTTCTAACCCTAGTTCCCTTTTCTAACAACGACCCCCTTTTTTCTTTTCCTCTTCTCGTTCCTATTCTTCTATCGATTCTTCCCTTATTTTCTTTTCCCTCTCTTTTATTCTTCTCTGCGTTTCTCCATCTGGGTCTCTCTCTTTTCCCTGTTGGCTTTCTGGGTTCGACGATTTCTTGGTGGTGGTTTTGCTCTTTCTTCGCCAGGTAATGGGGTTACCTCCTTTATGCTGTTATTGGGTTTTTGTTTTTTTGGGTTTGGTATCTGGGTTTGTTGATTTTTGCCCCTTTTTGAGGTTTTTGGCTTCATGGGTTGTTCTTGGTTTTGTTTCTTTGTGAATAACGATGAATGTTTGGGGGATTTGTTTTTTAATGAGCGATTTGTATGGGGGTTGTGTTTTGGCTTTTGATTTGGAGGTGTTGTGATTAGACTGTTTCTTTTCTTATATTAATGGTTTTTTTTTATTATTTCTTATTGTTGAGCCTGCAATTGATTGCTGGTAGTGTATTGGTATTGTGTTTTTTTGCCTCCTGTTTTGATTCCTTGAGTTGTTGCTTTCTTAAGATCTTTCTTTTCTCTTATTCTTATTCTGAAGTTTTCGTTTGGATGTCTGTTAATGTAGTGAATTGTTCTGAGTTTAAGTGTTGTATACTTATTTTTTTTGGTTCGTGTTTTAGGAATGACTCTGGATTTTTCATGTTTGAATTTAATCAAGTTAAGTTATTGTGGCGTTTATTGTTATTTACTTTATTTTCTTCTGAAGGTTCACTGTTTATGGTTATTTTCAGGGTTGTTGAAATAATAACCTACTATTGTTATTCGTGA

mRNA sequence

ATGGTGAACGAGAGGGAGATTATTAGTCCTCTCCTTTACCATCACCACCACCACTCCCTCTCCTTTCTTTCTTCTTTCTCTCTCATTCCCATTATTTTCCCTAATTCTTCTTCTCTTCTAACCCTAGTTCCCTTTTCTAACAACGACCCCCTTTTTTCTTTTCCTCTTCTCGTTCCTATTCTTCTATCGATTCTTCCCTTATTTTCTTTTCCCTCTCTTTTATTCTTCTCTGCGTTTCTCCATCTGGGTCTCTCTCTTTTCCCTGTTGGCTTTCTGGGTTCGACGATTTCTTGGTGGTGGTTTTGCTCTTTCTTCGCCAGGGTTGTTGAAATAATAACCTACTATTGTTATTCGTGA

Coding sequence (CDS)

ATGGTGAACGAGAGGGAGATTATTAGTCCTCTCCTTTACCATCACCACCACCACTCCCTCTCCTTTCTTTCTTCTTTCTCTCTCATTCCCATTATTTTCCCTAATTCTTCTTCTCTTCTAACCCTAGTTCCCTTTTCTAACAACGACCCCCTTTTTTCTTTTCCTCTTCTCGTTCCTATTCTTCTATCGATTCTTCCCTTATTTTCTTTTCCCTCTCTTTTATTCTTCTCTGCGTTTCTCCATCTGGGTCTCTCTCTTTTCCCTGTTGGCTTTCTGGGTTCGACGATTTCTTGGTGGTGGTTTTGCTCTTTCTTCGCCAGGGTTGTTGAAATAATAACCTACTATTGTTATTCGTGA

Protein sequence

MVNEREIISPLLYHHHHHSLSFLSSFSLIPIIFPNSSSLLTLVPFSNNDPLFSFPLLVPILLSILPLFSFPSLLFFSAFLHLGLSLFPVGFLGSTISWWWFCSFFARVVEIITYYCYS
Homology
[Close]
BLAST of IVF0003516 vs. ExPASy TrEMBL
Match: A0A0A0KB86 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G407740 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 3.8e-55
Identity = 116/118 (98.31%), Postives = 116/118 (98.31%), Query Frame = 0 

Query: 1   MVNEREIISPLLYHHHHHSLSFLSSFSLIPIIFPNSSSLLTLVPFSNNDPLFSFPLLVPI 60
           MVNEREIISPLLYHHHHHSLSFLSSFSLIPIIFPNSSSLLTLVPFSNNDPLFSFPLLVPI
Sbjct: 1   MVNEREIISPLLYHHHHHSLSFLSSFSLIPIIFPNSSSLLTLVPFSNNDPLFSFPLLVPI 60

Query: 61  LLSILPLFSFPSLLFFSAFLHLGLSLFPVGFLGSTISWWWFCSFFARVVEIITYYCYS 119
           LLSILPLFSFPSLLFFSAFLHLGLSLFPVGFLGSTISWWW CSFFAR VEIITYYCYS
Sbjct: 61  LLSILPLFSFPSLLFFSAFLHLGLSLFPVGFLGSTISWWWCCSFFARGVEIITYYCYS 118

[Close]
BLAST of IVF0003516 vs. NCBI nr
Match: KGN45021.1 (hypothetical protein Csa_015832 [Cucumis sativus])

HSP 1 Score: 224 bits (570), Expect = 1.88e-73
Identity = 116/118 (98.31%), Postives = 116/118 (98.31%), Query Frame = 0 

Query: 1   MVNEREIISPLLYHHHHHSLSFLSSFSLIPIIFPNSSSLLTLVPFSNNDPLFSFPLLVPI 60
           MVNEREIISPLLYHHHHHSLSFLSSFSLIPIIFPNSSSLLTLVPFSNNDPLFSFPLLVPI
Sbjct: 1   MVNEREIISPLLYHHHHHSLSFLSSFSLIPIIFPNSSSLLTLVPFSNNDPLFSFPLLVPI 60

Query: 61  LLSILPLFSFPSLLFFSAFLHLGLSLFPVGFLGSTISWWWFCSFFARVVEIITYYCYS 118
           LLSILPLFSFPSLLFFSAFLHLGLSLFPVGFLGSTISWWW CSFFAR VEIITYYCYS
Sbjct: 61  LLSILPLFSFPSLLFFSAFLHLGLSLFPVGFLGSTISWWWCCSFFARGVEIITYYCYS 118

[Close]
BLAST of IVF0003516 vs. NCBI nr
Match: KAG6593244.1 (hypothetical protein SDJN03_12720, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.8 bits (190), Expect = 1.03e-15
Identity = 52/83 (62.65%), Postives = 59/83 (71.08%), Query Frame = 0 

Query: 1  MVNEREIISP--LLYHHHHHSLSFLSSF-SLIPIIFPN-SSSLLTLVPFSNNDPLFSFPL 60
          MVN+REIISP  LLYHHHH S  FLSSF SLIPIIFPN +SSLLTL+PFS+ D LF  P 
Sbjct: 1  MVNKREIISPPLLLYHHHHLSPFFLSSFFSLIPIIFPNFASSLLTLIPFSSIDSLFRPPF 60

Query: 61 LVPILLSILPLFSFPSLLFFSAF 79
           +P      P F FP+   FS+F
Sbjct: 61 SLPFFNRFFPPFLFPNFCSFSSF 83

[Close]
BLAST of IVF0003516 vs. NCBI nr
Match: KAG6575760.1 (hypothetical protein SDJN03_26399, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.8 bits (146), Expect = 3.31e-09
Identity = 52/101 (51.49%), Postives = 57/101 (56.44%), Query Frame = 0 

Query: 1  MVNEREIISPLLYHHHHHSLSFLSSFSLIPIIFPNSSSLLTLVPFSNNDPLFSFP--LLV 60
          MVNEREIISPLLYHHHHHSL FLS     P  F           FS+N P F FP  LLV
Sbjct: 1  MVNEREIISPLLYHHHHHSLFFLSHSHYFPQFF-----------FSSN-PKFPFPSPLLV 60

Query: 61 PILLSILPLFSFPSLLFFSAFLHLGLSLFPVGFLGSTISWW 99
          P+L SI+ LF+F SL F        L +FP G L     WW
Sbjct: 61 PLLQSIVLLFNF-SLSFVL------LCVFPSGSLSF--PWW 80

The following BLAST results are available for this feature:
BLAST of IVF0003516 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0003516 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KB863.8e-5598.31Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G407740 PE=4 SV=1[more]
BLAST of IVF0003516 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN45021.11.88e-7398.31hypothetical protein Csa_015832 [Cucumis sativus][more]
KAG6593244.11.03e-1562.65hypothetical protein SDJN03_12720, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6575760.13.31e-0951.49hypothetical protein SDJN03_26399, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of IVF0003516 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0003516.1IVF0003516.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane