IVF0003510 (gene) Melon (IVF77) v1

Overview
NameIVF0003510
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Locationchr01: 9275556 .. 9275795 (-)
RNA-Seq ExpressionIVF0003510
SyntenyIVF0003510
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAATCCCCTTAGATACTAAAACCTGCAATGCAATAGAATCTCTTGGATTGGATTATTGTGAAGAAGAAGTGTTCGTCAAACTGTTTAGCTCTGAAGCATTTTTTGAAGATGAGGATCCTGGTTATATATTGAAAAAAGTGAATGTCGTGTTTGGCGCGAGGATATTTGAACCTTGGATTTACAAACCAAATGCGTTAAGAAGACCAAGCCATCAATTGAAGAACCATCAAAATTAG

mRNA sequence

ATGAAAATCCCCTTAGATACTAAAACCTGCAATGCAATAGAATCTCTTGGATTGGATTATTGTGAAGAAGAAGTGTTCGTCAAACTGTTTAGCTCTGAAGCATTTTTTGAAGATGAGGATCCTGGTTATATATTGAAAAAAGTGAATGTCGTGTTTGGCGCGAGGATATTTGAACCTTGGATTTACAAACCAAATGCGTTAAGAAGACCAAGCCATCAATTGAAGAACCATCAAAATTAG

Coding sequence (CDS)

ATGAAAATCCCCTTAGATACTAAAACCTGCAATGCAATAGAATCTCTTGGATTGGATTATTGTGAAGAAGAAGTGTTCGTCAAACTGTTTAGCTCTGAAGCATTTTTTGAAGATGAGGATCCTGGTTATATATTGAAAAAAGTGAATGTCGTGTTTGGCGCGAGGATATTTGAACCTTGGATTTACAAACCAAATGCGTTAAGAAGACCAAGCCATCAATTGAAGAACCATCAAAATTAG

Protein sequence

MKIPLDTKTCNAIESLGLDYCEEEVFVKLFSSEAFFEDEDPGYILKKVNVVFGARIFEPWIYKPNALRRPSHQLKNHQN
Homology
[Close]
BLAST of IVF0003510 vs. ExPASy TrEMBL
Match: A0A5D3E7G0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold340G00160 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.2e-12
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 0 

Query: 1   MKIPLDTKTCNAIESLGLDYCEEEVFVKLFSSEAFFEDEDPGYILKKVNVVFGARIFEP 60
           MK    T+ CNAIESLG DYCEEEV+V+LFS E FF+++D  YIL++VNVV GAR FEP
Sbjct: 63  MKFYSYTENCNAIESLGWDYCEEEVYVELFSLEEFFKEDDVNYILEEVNVVSGARKFEP 121

[Close]
BLAST of IVF0003510 vs. ExPASy TrEMBL
Match: A0A5D3DQS7 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold436G001060 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 6.6e-11
Identity = 36/58 (62.07%), Postives = 42/58 (72.41%), Query Frame = 0 

Query: 1  MKIPLDTKTCNAIESLGLDYCEEEVFVKLFSSEAFFEDEDPGYILKKVNVVFGARIFE 59
          MK P + + CNAI+SLG DYCEEEV  KLF  E FF++ED  YI K+VNVV G R FE
Sbjct: 1  MKFPSNVENCNAIKSLGWDYCEEEVLTKLFIPEEFFKEEDSYYIQKEVNVVSGTRKFE 58

[Close]
BLAST of IVF0003510 vs. ExPASy TrEMBL
Match: A0A5A7V9Q0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001970 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.1e-10
Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = 0 

Query: 13 IESLGLDYCEEEVFVKLFSSEAFFEDEDPGYILKKVNVVFGARIFEP 60
          IESLG DYC+EEVFV+LFS E FFE+ED  YIL++VNVV+GAR FEP
Sbjct: 9  IESLGWDYCKEEVFVELFSPEEFFEEEDSDYILEEVNVVYGARKFEP 55

[Close]
BLAST of IVF0003510 vs. ExPASy TrEMBL
Match: A0A5D3BLR6 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00610 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.3e-10
Identity = 34/58 (58.62%), Postives = 43/58 (74.14%), Query Frame = 0 

Query: 1  MKIPLDTKTCNAIESLGLDYCEEEVFVKLFSSEAFFEDEDPGYILKKVNVVFGARIFE 59
          MKI  D +    IESLG DYCEEE + +L+++E FFEDEDP YIL++VNVV G + FE
Sbjct: 16 MKISADNEKNRMIESLGWDYCEEEAYHELYNTEEFFEDEDPSYILEEVNVVSGKKKFE 73

[Close]
BLAST of IVF0003510 vs. ExPASy TrEMBL
Match: A0A5A7U2P4 (Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00730 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.6e-10
Identity = 36/59 (61.02%), Postives = 41/59 (69.49%), Query Frame = 0 

Query: 1   MKIPLDTKTCNAIESLGLDYCEEEVFVKLFSSEAFFEDEDPGYILKKVNVVFGARIFEP 60
           MK P D K  N I+ LG DYCEEEVF KLFS E FFEDE+P  IL++VNVV   R  +P
Sbjct: 260 MKFPSDAKNYNKIKFLGWDYCEEEVFAKLFSLEEFFEDENPQDILEEVNVVSDTRKLKP 318

[Close]
BLAST of IVF0003510 vs. NCBI nr
Match: KAA0032353.1 (uncharacterized protein E6C27_scaffold219G002180 [Cucumis melo var. makuwa] >TYK31626.1 uncharacterized protein E5676_scaffold340G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 1.31e-17
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 0 

Query: 1   MKIPLDTKTCNAIESLGLDYCEEEVFVKLFSSEAFFEDEDPGYILKKVNVVFGARIFEP 59
           MK    T+ CNAIESLG DYCEEEV+V+LFS E FF+++D  YIL++VNVV GAR FEP
Sbjct: 63  MKFYSYTENCNAIESLGWDYCEEEVYVELFSLEEFFKEDDVNYILEEVNVVSGARKFEP 121

[Close]
BLAST of IVF0003510 vs. NCBI nr
Match: TYK25882.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 2.44e-15
Identity = 36/58 (62.07%), Postives = 42/58 (72.41%), Query Frame = 0 

Query: 1  MKIPLDTKTCNAIESLGLDYCEEEVFVKLFSSEAFFEDEDPGYILKKVNVVFGARIFE 58
          MK P + + CNAI+SLG DYCEEEV  KLF  E FF++ED  YI K+VNVV G R FE
Sbjct: 1  MKFPSNVENCNAIKSLGWDYCEEEVLTKLFIPEEFFKEEDSYYIQKEVNVVSGTRKFE 58

[Close]
BLAST of IVF0003510 vs. NCBI nr
Match: KAA0062401.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK26580.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 8.39e-14
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 0 

Query: 9  TCNAIESLGLDYCEEEVFVKLFSSEAFFEDEDPGYILKKVNVVFGARIFEP 59
          T   IESLG DYC+EEVFV+LFS E FFE+ED  YIL++VNVV+GAR FEP
Sbjct: 5  TTYYIESLGWDYCKEEVFVELFSPEEFFEEEDSDYILEEVNVVYGARKFEP 55

[Close]
BLAST of IVF0003510 vs. NCBI nr
Match: KAA0054122.1 (uncharacterized protein E6C27_scaffold131G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 2.87e-13
Identity = 34/58 (58.62%), Postives = 43/58 (74.14%), Query Frame = 0 

Query: 1   MKIPLDTKTCNAIESLGLDYCEEEVFVKLFSSEAFFEDEDPGYILKKVNVVFGARIFE 58
           MK P +    NAIESLG DYC+EE + +LFS+E FFE+EDP YIL++VNV+ G   FE
Sbjct: 91  MKFPANDVKYNAIESLGWDYCKEEPYHELFSTEEFFEEEDPSYILEEVNVMLGKTKFE 148

[Close]
BLAST of IVF0003510 vs. NCBI nr
Match: KAA0038053.1 (uncharacterized protein E6C27_scaffold36G002560 [Cucumis melo var. makuwa] >TYK20551.1 uncharacterized protein E5676_scaffold237G001390 [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 7.74e-13
Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 0 

Query: 2   KIPLDTKTCNAIESLGLDYCEEEVFVKLFSSEAFFEDEDPGYILKKVNVVFGARIFE 58
           + P D +T +AIESL  DYCEEEV+ +LF++E FFE+ED  YILK+VN+V G R FE
Sbjct: 113 EFPTDDETYSAIESLRWDYCEEEVYHELFNTEEFFEEEDLSYILKEVNIVSGERNFE 169

The following BLAST results are available for this feature:
BLAST of IVF0003510 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0003510 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3E7G01.2e-1266.10Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DQS76.6e-1162.07Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7V9Q01.1e-1074.47Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold31... [more]
A0A5D3BLR64.3e-1058.62Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak... [more]
A0A5A7U2P45.6e-1061.02Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=119... [more]
BLAST of IVF0003510 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0032353.11.31e-1766.10uncharacterized protein E6C27_scaffold219G002180 [Cucumis melo var. makuwa] >TYK... [more]
TYK25882.12.44e-1562.07Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa][more]
KAA0062401.18.39e-1470.59reverse transcriptase [Cucumis melo var. makuwa] >TYK26580.1 reverse transcripta... [more]
KAA0054122.12.87e-1358.62uncharacterized protein E6C27_scaffold131G00340 [Cucumis melo var. makuwa][more]
KAA0038053.17.74e-1359.65uncharacterized protein E6C27_scaffold36G002560 [Cucumis melo var. makuwa] >TYK2... [more]
BLAST of IVF0003510 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0003510.1IVF0003510.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
molecular_function GO:0003964 RNA-directed DNA polymerase activity