IVF0003502 (gene) Melon (IVF77) v1

Overview


Name	IVF0003502
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Pol protein
Location	chr12: 12052448 .. 12052771 (+)
RNA-Seq Expression	IVF0003502
Synteny	IVF0003502

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCACCTTCACCTTCTCTTCCATTCGGTTTCGCCGTCGACCCTCCCAATCTCCACTTCATATCCAGCCAACGCCACCGCTGTCACTGTCAGTTTGTTTTCACCGTTGTGCATCCCCTTCGTTTGGCCGTCCGCTGCGTTGAAGCAGAGCCGCATCGTTCGCCAAGCAGCCGTCGGTGAGCCTCCAACGGTCATGGATCTCCGGTCTTGCAAGCGCCTATGTGAAGCCAAGCCGAGCCGTGAATCCAAGCCGAGCCAAACCAATTTGCAAGTCGAGCCGTACCTGAGCCGCAAATCCAAACCGAGCCGAGCCGAGCCATGA

mRNA sequence

ATGCCTCACCTTCACCTTCTCTTCCATTCGGTTTCGCCGTCGACCCTCCCAATCTCCACTTCATATCCAGCCAACGCCACCGCTGTCACTGTCAGTTTGTTTTCACCGTTGTGCATCCCCTTCGTTTGGCCGTCCGCTGCGTTGAAGCAGAGCCGCATCGTTCGCCAAGCAGCCGTCGGTGAGCCTCCAACGGTCATGGATCTCCGGTCTTGCAAGCGCCTATGTGAAGCCAAGCCGAGCCGTGAATCCAAGCCGAGCCAAACCAATTTGCAAGTCGAGCCGTACCTGAGCCGCAAATCCAAACCGAGCCGAGCCGAGCCATGA

Coding sequence (CDS)

ATGCCTCACCTTCACCTTCTCTTCCATTCGGTTTCGCCGTCGACCCTCCCAATCTCCACTTCATATCCAGCCAACGCCACCGCTGTCACTGTCAGTTTGTTTTCACCGTTGTGCATCCCCTTCGTTTGGCCGTCCGCTGCGTTGAAGCAGAGCCGCATCGTTCGCCAAGCAGCCGTCGGTGAGCCTCCAACGGTCATGGATCTCCGGTCTTGCAAGCGCCTATGTGAAGCCAAGCCGAGCCGTGAATCCAAGCCGAGCCAAACCAATTTGCAAGTCGAGCCGTACCTGAGCCGCAAATCCAAACCGAGCCGAGCCGAGCCATGA

Protein sequence

MPHLHLLFHSVSPSTLPISTSYPANATAVTVSLFSPLCIPFVWPSAALKQSRIVRQAAVGEPPTVMDLRSCKRLCEAKPSRESKPSQTNLQVEPYLSRKSKPSRAEP

Homology

[Close]

BLAST of IVF0003502 vs. ExPASy TrEMBL
Match: A0A5D3DDX8 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1721G00280 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.2e-10
Identity = 37/53 (69.81%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 40   PFVWPSAALKQSRIVRQAAVGEPPTVMDLRSCKRLCEAKPSRESKPSQTNLQV 93
            P  WPSAALKQS IVRQAA GEP TVM+LRSCK  CEAKPSRES+P++ + ++
Sbjct: 1100 PLRWPSAALKQSCIVRQAADGEPSTVMELRSCKHPCEAKPSRESQPTELSCEL 1152

[Close]

BLAST of IVF0003502 vs. NCBI nr
Match: TYK21774.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 1.88e-13
Identity = 37/53 (69.81%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 40   PFVWPSAALKQSRIVRQAAVGEPPTVMDLRSCKRLCEAKPSRESKPSQTNLQV 92
            P  WPSAALKQS IVRQAA GEP TVM+LRSCK  CEAKPSRES+P++ + ++
Sbjct: 1100 PLRWPSAALKQSCIVRQAADGEPSTVMELRSCKHPCEAKPSRESQPTELSCEL 1152

[Close]

BLAST of IVF0003502 vs. NCBI nr
Match: KAA0033194.1 (putative transposable element-related protein [Cucumis melo var. makuwa] >TYK07496.1 putative transposable element-related protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 4.75e-06
Identity = 26/30 (86.67%), Postives = 27/30 (90.00%), Query Frame = 0


Query: 2   PHLHLLFHSVSPSTLPISTSYPANATAVTV 31
           P+LHL F SVSPS LPISTSYPANATAVTV
Sbjct: 291 PYLHLRFRSVSPSALPISTSYPANATAVTV 320

The following BLAST results are available for this feature:

BLAST of IVF0003502 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0003502 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DDX8	1.2e-10	69.81	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1721G00280 P...	[more]

BLAST of IVF0003502 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK21774.1	1.88e-13	69.81	pol protein [Cucumis melo var. makuwa]	[more]
KAA0033194.1	4.75e-06	86.67	putative transposable element-related protein [Cucumis melo var. makuwa] >TYK074...	[more]

BLAST of IVF0003502 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0003502.1	IVF0003502.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding