IVF0003479 (gene) Melon (IVF77) v1

Overview
NameIVF0003479
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr07: 23761685 .. 23761921 (+)
RNA-Seq ExpressionIVF0003479
SyntenyIVF0003479
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGTCGTTAATGGGCCAATTGGGTCCATACATAACGAAGAAGCCCGGCCCATTAAATTCACATGGGTTGCGGCCCTGGACTTGTCGGGCTCGGGGTTTGTGAAAGCGAAGTGGCTGTGTGAGAAGTTTCCGAAGAGGAGATATTCACGGAGGTCACTGCCAACAAATTACTTGCTTGACCCATCTTCTTCTCCTTCACCATCTTCGCCGTCGTTGGTTTCTTCCAGCGGATAA

mRNA sequence

ATGAAAGTCGTTAATGGGCCAATTGGGTCCATACATAACGAAGAAGCCCGGCCCATTAAATTCACATGGGTTGCGGCCCTGGACTTGTCGGGCTCGGGGTTTGTGAAAGCGAAGTGGCTGTGTGAGAAGTTTCCGAAGAGGAGATATTCACGGAGGTCACTGCCAACAAATTACTTGCTTGACCCATCTTCTTCTCCTTCACCATCTTCGCCGTCGTTGGTTTCTTCCAGCGGATAA

Coding sequence (CDS)

ATGAAAGTCGTTAATGGGCCAATTGGGTCCATACATAACGAAGAAGCCCGGCCCATTAAATTCACATGGGTTGCGGCCCTGGACTTGTCGGGCTCGGGGTTTGTGAAAGCGAAGTGGCTGTGTGAGAAGTTTCCGAAGAGGAGATATTCACGGAGGTCACTGCCAACAAATTACTTGCTTGACCCATCTTCTTCTCCTTCACCATCTTCGCCGTCGTTGGTTTCTTCCAGCGGATAA

Protein sequence

MKVVNGPIGSIHNEEARPIKFTWVAALDLSGSGFVKAKWLCEKFPKRRYSRRSLPTNYLLDPSSSPSPSSPSLVSSSG
Homology
[Close]
BLAST of IVF0003479 vs. ExPASy TrEMBL
Match: A0A0A0KYC9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G003740 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.7e-22
Identity = 55/65 (84.62%), Postives = 58/65 (89.23%), Query Frame = 0 

Query: 1  MKVVNGPIGSIHNEEARPIKFTWVAALDLSGSGFVKAKWLCEKFPKRRYSRRSLPTNYLL 60
          M+V+NGPIGSI NEEARP  FTWVAALDLSGSG VKAKW  EKF K+RYSRRSLPTNYLL
Sbjct: 1  MEVINGPIGSIQNEEARPNTFTWVAALDLSGSGLVKAKWPSEKFLKKRYSRRSLPTNYLL 60

Query: 61 DPSSS 66
          DPSSS
Sbjct: 61 DPSSS 65

[Close]
BLAST of IVF0003479 vs. NCBI nr
Match: KGN52861.1 (hypothetical protein Csa_014780 [Cucumis sativus])

HSP 1 Score: 112 bits (279), Expect = 3.84e-30
Identity = 55/65 (84.62%), Postives = 58/65 (89.23%), Query Frame = 0 

Query: 1  MKVVNGPIGSIHNEEARPIKFTWVAALDLSGSGFVKAKWLCEKFPKRRYSRRSLPTNYLL 60
          M+V+NGPIGSI NEEARP  FTWVAALDLSGSG VKAKW  EKF K+RYSRRSLPTNYLL
Sbjct: 1  MEVINGPIGSIQNEEARPNTFTWVAALDLSGSGLVKAKWPSEKFLKKRYSRRSLPTNYLL 60

Query: 61 DPSSS 65
          DPSSS
Sbjct: 61 DPSSS 65

The following BLAST results are available for this feature:
BLAST of IVF0003479 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0003479 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KYC91.7e-2284.62Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G003740 PE=4 SV=1[more]
BLAST of IVF0003479 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN52861.13.84e-3084.62hypothetical protein Csa_014780 [Cucumis sativus][more]
BLAST of IVF0003479 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..78

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0003479.1IVF0003479.1mRNA