IVF0003477 (gene) Melon (IVF77) v1

Overview
NameIVF0003477
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr03: 22418163 .. 22418566 (+)
RNA-Seq ExpressionIVF0003477
SyntenyIVF0003477
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGGTCGTGATAGGAGAAAAAAAAAACTGATCCTGAGAGTCTTTGGCTCTTGTTTTCGCGGTGACGAAGAAGCCGATGGGATTTTGATGGGGAGAAGGAAAGGGCTTATATACACGCTTAAAGGAATGGTAGAAAGAAAACCCTACACGTCACCAATTAGGGCAAACTTTTGTGAAAACAATTTTTAAATTAATAAAATTTAAAAAATATATAGATATTTGCGTTTAGAGCGTAACCGAAATGAGGGGCAAAATTGCCCAAAAGCTGTGTTTTATTTACGAAATTGTCCTCGGTAGTCGCTATTGCTATCGACGTTTCTGGATTCTTGAATATTTTGAGTAACGACATAAATTTGAAGAATATGTTTTTGTCCAATATGGTAATTGTAATAAATATATGA

mRNA sequence

ATGAATGGTCGTGATAGGAGAAAAAAAAAACTGATCCTGAGAGTCTTTGGCTCTTGTTTTCGCGGTGACGAAGAAGCCGATGGGATTTTGATGGGGAGAAGGAAAGGGCTTATATACACGCTTAAAGGAATGGTAGAAAGAAAACCCTACACGTCACCAATTAGGGCAAACTTTTTCGCTATTGCTATCGACGTTTCTGGATTCTTGAATATTTTGAGTAACGACATAAATTTGAAGAATATGTTTTTGTCCAATATGGTAATTGTAATAAATATATGA

Coding sequence (CDS)

ATGAATGGTCGTGATAGGAGAAAAAAAAAACTGATCCTGAGAGTCTTTGGCTCTTGTTTTCGCGGTGACGAAGAAGCCGATGGGATTTTGATGGGGAGAAGGAAAGGGCTTATATACACGCTTAAAGGAATGGTAGAAAGAAAACCCTACACGTCACCAATTAGGGCAAACTTTTTCGCTATTGCTATCGACGTTTCTGGATTCTTGAATATTTTGAGTAACGACATAAATTTGAAGAATATGTTTTTGTCCAATATGGTAATTGTAATAAATATATGA

Protein sequence

MNGRDRRKKKLILRVFGSCFRGDEEADGILMGRRKGLIYTLKGMVERKPYTSPIRANFFAIAIDVSGFLNILSNDINLKNMFLSNMVIVINI
Homology
[Close]
BLAST of IVF0003477 vs. ExPASy TrEMBL
Match: A0A0A0LK53 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G310380 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.0e-15
Identity = 56/92 (60.87%), Postives = 61/92 (66.30%), Query Frame = 0 

Query: 1  MNGRDRRKKKLILRVFGSCFRGDEEADGILMGRRKGLIYTLKGMVERKPYTSPIRANFFA 60
          MNGRDRRKKKLIL+ FGSCFRGDEEADG   G ++      +  V              A
Sbjct: 1  MNGRDRRKKKLILKGFGSCFRGDEEADGDFDGEKERAYIHARRNV--------------A 60

Query: 61 IAIDVSGFLNILSNDINLKNMFLSNMVIVINI 93
          IAIDVS FLNILS+D NLKNMFLS MVIVI I
Sbjct: 61 IAIDVSRFLNILSHDRNLKNMFLSIMVIVIKI 78

[Close]
BLAST of IVF0003477 vs. NCBI nr
Match: KAE8652937.1 (hypothetical protein Csa_017741 [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 9.94e-21
Identity = 56/92 (60.87%), Postives = 61/92 (66.30%), Query Frame = 0 

Query: 1  MNGRDRRKKKLILRVFGSCFRGDEEADGILMGRRKGLIYTLKGMVERKPYTSPIRANFFA 60
          MNGRDRRKKKLIL+ FGSCFRGDEEADG   G ++      +  V              A
Sbjct: 18 MNGRDRRKKKLILKGFGSCFRGDEEADGDFDGEKERAYIHARRNV--------------A 77

Query: 61 IAIDVSGFLNILSNDINLKNMFLSNMVIVINI 92
          IAIDVS FLNILS+D NLKNMFLS MVIVI I
Sbjct: 78 IAIDVSRFLNILSHDRNLKNMFLSIMVIVIKI 95

The following BLAST results are available for this feature:
BLAST of IVF0003477 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0003477 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LK533.0e-1560.87Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G310380 PE=4 SV=1[more]
BLAST of IVF0003477 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8652937.19.94e-2160.87hypothetical protein Csa_017741 [Cucumis sativus][more]
BLAST of IVF0003477 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0003477.1IVF0003477.1mRNA