IVF0003381 (gene) Melon (IVF77) v1

Overview
NameIVF0003381
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Locationchr05: 8528879 .. 8529031 (+)
RNA-Seq ExpressionIVF0003381
SyntenyIVF0003381
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCATGCATGCAAGGGGGAGTTTGGAGATAAACTCCACCTTGGCGAGATAACTTCCATCATTTGTGTCCCGAAAGGAGAACAAGTTTGGGTATTAGGCATTGAGAGATTGTCACCCTTAAACAAGAAGCTCTATAAGTCTTGTAAGTGA

mRNA sequence

ATGGCTCATGCATGCAAGGGGGAGTTTGGAGATAAACTCCACCTTGGCGAGATAACTTCCATCATTTGTGTCCCGAAAGGAGAACAAGTTTGGGTATTAGGCATTGAGAGATTGTCACCCTTAAACAAGAAGCTCTATAAGTCTTGTAAGTGA

Coding sequence (CDS)

ATGGCTCATGCATGCAAGGGGGAGTTTGGAGATAAACTCCACCTTGGCGAGATAACTTCCATCATTTGTGTCCCGAAAGGAGAACAAGTTTGGGTATTAGGCATTGAGAGATTGTCACCCTTAAACAAGAAGCTCTATAAGTCTTGTAAGTGA

Protein sequence

MAHACKGEFGDKLHLGEITSIICVPKGEQVWVLGIERLSPLNKKLYKSCK
Homology
BLAST of IVF0003381 vs. ExPASy TrEMBL
Match: A0A5D3C951 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1933G00010 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.6e-10
Identity = 34/50 (68.00%), Postives = 37/50 (74.00%), Query Frame = 0

Query: 1  MAHACKGEFGDKLHLGEITSIICVPKGEQVWVLGIERLSPLNKKLYKSCK 51
          MA+ CK EF   LH+ EITSI CVPKGEQVWVL  ERL PL +K YKS K
Sbjct: 17 MANTCKEEFKYLLHIDEITSITCVPKGEQVWVLSAERLPPLKEKYYKSYK 66

BLAST of IVF0003381 vs. ExPASy TrEMBL
Match: A0A5D3DDG5 (Cytochrome b561 and DOMON domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold305G00260 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.4e-08
Identity = 28/37 (75.68%), Postives = 33/37 (89.19%), Query Frame = 0

Query: 1  MAHACKGEFGDKLHLGEITSIICVPKGEQVWVLGIER 38
          MA+ACK +FGD+L+L +ITSIICVPKGEQVWV G ER
Sbjct: 45 MANACKEKFGDELYLSKITSIICVPKGEQVWVYGTER 81

BLAST of IVF0003381 vs. ExPASy TrEMBL
Match: A0A5A7V332 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001430 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 9.0e-06
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 0

Query: 1  MAHACKGEFGDKLHLGEITSIICVPKGEQVWVLGIERL 39
          MA+  K EF +KLHLG+ TSIIC PKG QVW +G+ERL
Sbjct: 1  MANVRKEEFENKLHLGQTTSIICTPKGGQVWAIGVERL 38

BLAST of IVF0003381 vs. ExPASy TrEMBL
Match: A0A5D3CY29 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00960 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.5e-05
Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = 0

Query: 5   CKGEFGDKLHLGEITSIICVPKGEQVWVLGIERLSPLNKKLY 47
           C+ EFGD LH G+ITSIIC P+  QVW +G ERL  L +K Y
Sbjct: 102 CQEEFGDNLHFGKITSIICTPERGQVWAIGAERLLFLIEKFY 143

BLAST of IVF0003381 vs. ExPASy TrEMBL
Match: A0A5D3BHD0 (LINE-1 reverse transcriptase isogeny OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold369G00010 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.0e-05
Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = 0

Query: 1  MAHACKGEFGDKLHLGEITSIICVPKGEQVWVLGIER 38
          MA+  K EF +KLHLG+ TSIIC PKG QVW +G+ER
Sbjct: 1  MANVRKEEFENKLHLGQTTSIICTPKGGQVWAIGVER 37

BLAST of IVF0003381 vs. NCBI nr
Match: TYK07860.1 (uncharacterized protein E5676_scaffold1933G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 1.76e-13
Identity = 34/50 (68.00%), Postives = 37/50 (74.00%), Query Frame = 0

Query: 1  MAHACKGEFGDKLHLGEITSIICVPKGEQVWVLGIERLSPLNKKLYKSCK 50
          MA+ CK EF   LH+ EITSI CVPKGEQVWVL  ERL PL +K YKS K
Sbjct: 17 MANTCKEEFKYLLHIDEITSITCVPKGEQVWVLSAERLPPLKEKYYKSYK 66

BLAST of IVF0003381 vs. NCBI nr
Match: KAA0026294.1 (cytochrome b561 and DOMON domain-containing protein [Cucumis melo var. makuwa] >TYK21490.1 cytochrome b561 and DOMON domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 2.82e-10
Identity = 28/37 (75.68%), Postives = 33/37 (89.19%), Query Frame = 0

Query: 1  MAHACKGEFGDKLHLGEITSIICVPKGEQVWVLGIER 37
          MA+ACK +FGD+L+L +ITSIICVPKGEQVWV G ER
Sbjct: 45 MANACKEKFGDELYLSKITSIICVPKGEQVWVYGTER 81

BLAST of IVF0003381 vs. NCBI nr
Match: KAA0032002.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK16823.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 57.0 bits (136), Expect = 2.23e-08
Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = 0

Query: 5   CKGEFGDKLHLGEITSIICVPKGEQVWVLGIERLSPLNKKLY 46
           C+ EFGD LH G+ITSIIC P+  QVW +G ERL  L +K Y
Sbjct: 102 CQEEFGDNLHFGKITSIICTPERGQVWAIGAERLLFLIEKFY 143

BLAST of IVF0003381 vs. NCBI nr
Match: KAA0062632.1 (uncharacterized protein E6C27_scaffold79G001430 [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 2.33e-08
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 0

Query: 1  MAHACKGEFGDKLHLGEITSIICVPKGEQVWVLGIERL 38
          MA+  K EF +KLHLG+ TSIIC PKG QVW +G+ERL
Sbjct: 1  MANVRKEEFENKLHLGQTTSIICTPKGGQVWAIGVERL 38

BLAST of IVF0003381 vs. NCBI nr
Match: TYJ98051.1 (LINE-1 reverse transcriptase isogeny [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 1.30e-07
Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = 0

Query: 1  MAHACKGEFGDKLHLGEITSIICVPKGEQVWVLGIER 37
          MA+  K EF +KLHLG+ TSIIC PKG QVW +G+ER
Sbjct: 1  MANVRKEEFENKLHLGQTTSIICTPKGGQVWAIGVER 37

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C9514.6e-1068.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DDG57.4e-0875.68Cytochrome b561 and DOMON domain-containing protein OS=Cucumis melo var. makuwa ... [more]
A0A5A7V3329.0e-0665.79Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CY291.5e-0559.52Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3BHD02.0e-0564.86LINE-1 reverse transcriptase isogeny OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
Match NameE-valueIdentityDescription
TYK07860.11.76e-1368.00uncharacterized protein E5676_scaffold1933G00010 [Cucumis melo var. makuwa][more]
KAA0026294.12.82e-1075.68cytochrome b561 and DOMON domain-containing protein [Cucumis melo var. makuwa] >... [more]
KAA0032002.12.23e-0859.52Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK16823.1 Tran... [more]
KAA0062632.12.33e-0865.79uncharacterized protein E6C27_scaffold79G001430 [Cucumis melo var. makuwa][more]
TYJ98051.11.30e-0764.86LINE-1 reverse transcriptase isogeny [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0003381.1IVF0003381.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane