IVF0003365 (gene) Melon (IVF77) v1

Overview


Name	IVF0003365
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr09: 587786 .. 588067 (+)
RNA-Seq Expression	IVF0003365
Synteny	IVF0003365

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAAAAGATTTCATGGAACCTTCGAGAAAGCTTACCCACTAAAACTCAACAAATCTCCGACGAAACTTGACAGCACAACGGGCGGCACAGCTAACAAAATCCGATGGCGGCAAGGACCAGTAGAGAGAGAGAGAAATGGTAGAGAGGGAGAGAGAGCGCTGGCGGCAGAAGGCCGGCGGAGCAACGGCGGGCGGCGGCTGCAACCCTCGGTGAAGAATAAGAAAAAGGCGGGGGTCGGGGCTGTTTTCACGGGAAAGAATAAGAAGAAAAAAAATTGA

mRNA sequence

ATGGGAAAAAGATTTCATGGAACCTTCGAGAAAGCTTACCCACTAAAACTCAACAAATCTCCGACGAAACTTGACAGCACAACGGGCGGCACAGCTAACAAAATCCGATGGCGGCAAGGACCAGTAGAGAGAGAGAGAAATGGTAGAGAGGGAGAGAGAGCGCTGGCGGCAGAAGGCCGGCGGAGCAACGGCGGGCGGCGGCTGCAACCCTCGGTGAAGAATAAGAAAAAGGCGGGGGTCGGGGCTGTTTTCACGGGAAAGAATAAGAAGAAAAAAAATTGA

Coding sequence (CDS)

ATGGGAAAAAGATTTCATGGAACCTTCGAGAAAGCTTACCCACTAAAACTCAACAAATCTCCGACGAAACTTGACAGCACAACGGGCGGCACAGCTAACAAAATCCGATGGCGGCAAGGACCAGTAGAGAGAGAGAGAAATGGTAGAGAGGGAGAGAGAGCGCTGGCGGCAGAAGGCCGGCGGAGCAACGGCGGGCGGCGGCTGCAACCCTCGGTGAAGAATAAGAAAAAGGCGGGGGTCGGGGCTGTTTTCACGGGAAAGAATAAGAAGAAAAAAAATTGA

Protein sequence

MGKRFHGTFEKAYPLKLNKSPTKLDSTTGGTANKIRWRQGPVERERNGREGERALAAEGRRSNGGRRLQPSVKNKKKAGVGAVFTGKNKKKKN

Homology

[Close]

BLAST of IVF0003365 vs. ExPASy TrEMBL
Match: A0A0A0KSS6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G649260 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.2e-14
Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 1  MGKRFHGTFEKAYPLKLNKSPTKLDSTTGGTANKIRWRQGPVERERNGREGER 54
          MGKRFHGTF+KAY  KLNKSPTKLD TTGGTANK++ R+GP ERERNG EGER
Sbjct: 1  MGKRFHGTFKKAYSPKLNKSPTKLDGTTGGTANKLQQRRGPEERERNGSEGER 53

[Close]

BLAST of IVF0003365 vs. NCBI nr
Match: KGN52655.1 (hypothetical protein Csa_009276 [Cucumis sativus])

HSP 1 Score: 88.6 bits (218), Expect = 7.83e-21
Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 1  MGKRFHGTFEKAYPLKLNKSPTKLDSTTGGTANKIRWRQGPVERERNGREGER 53
          MGKRFHGTF+KAY  KLNKSPTKLD TTGGTANK++ R+GP ERERNG EGER
Sbjct: 1  MGKRFHGTFKKAYSPKLNKSPTKLDGTTGGTANKLQQRRGPEERERNGSEGER 53

The following BLAST results are available for this feature:

BLAST of IVF0003365 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0003365 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSS6	1.2e-14	81.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G649260 PE=4 SV=1	[more]

BLAST of IVF0003365 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52655.1	7.83e-21	81.13	hypothetical protein Csa_009276 [Cucumis sativus]	[more]

BLAST of IVF0003365 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0003365.1	IVF0003365.1	mRNA