IVF0003346 (gene) Melon (IVF77) v1

Overview
NameIVF0003346
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionDNA/RNA polymerases superfamily protein
Locationchr03: 1320554 .. 1320814 (-)
RNA-Seq ExpressionIVF0003346
SyntenyIVF0003346
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAAGTGTATCTTTAATATGATAGCTCAGAGGTTGGTTGACAGTGTTGGGTAAGCTCAACCAGATCTTGAGAAGAAATATGGCATTGAGAGGATGAAAGCTTTAGGTGCCACTCCGTTTAAGGGGATTGTAGTTCCTGCTGAAGTAGAGGCATGGTTGTCGTTGATAGAGAAATGTTTTGGAGTTATATGTTGTTCGAAAGACAGAAAAGTGGAACTGGCTACATTCCTGCTTCAAAAAGAAGTGGAGGATTGGTGA

mRNA sequence

ATGGAAAAGTGTATCTTTAATATGATAGCTCAGAGGTTGGTTGACAGTAAATATGGCATTGAGAGGATGAAAGCTTTAGGTGCCACTCCGTTTAAGGGGATTGTAGTTCCTGCTGAAGTAGAGGCATGGTTGTCGTTGATAGAGAAATGTTTTGGAGTTATATGTTGTTCGAAAGACAGAAAAGTGGAACTGGCTACATTCCTGCTTCAAAAAGAAGTGGAGGATTGGTGA

Coding sequence (CDS)

ATGGAAAAGTGTATCTTTAATATGATAGCTCAGAGGTTGGTTGACAGTAAATATGGCATTGAGAGGATGAAAGCTTTAGGTGCCACTCCGTTTAAGGGGATTGTAGTTCCTGCTGAAGTAGAGGCATGGTTGTCGTTGATAGAGAAATGTTTTGGAGTTATATGTTGTTCGAAAGACAGAAAAGTGGAACTGGCTACATTCCTGCTTCAAAAAGAAGTGGAGGATTGGTGA

Protein sequence

MEKCIFNMIAQRLVDSKYGIERMKALGATPFKGIVVPAEVEAWLSLIEKCFGVICCSKDRKVELATFLLQKEVEDW
Homology
BLAST of IVF0003346 vs. ExPASy TrEMBL
Match: A0A5A7SKG0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G00920 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.4e-20
Identity = 57/85 (67.06%), Postives = 62/85 (72.94%), Query Frame = 0

Query: 1   MEKCIFNMIAQRLVD----------SKYGIERMKALGATPFKGIVVPAEVEAWLSLIEKC 60
           ME+ IFN IAQRL D           KYGIERMKALGATPFKG V   EVEAWL+LIEKC
Sbjct: 108 MEERIFNKIAQRLADGVRLAQADLEKKYGIERMKALGATPFKGTVDSVEVEAWLTLIEKC 167

Query: 61  FGVICCSKDRKVELATFLLQKEVED 76
           F V+ C +DRKVELATFLL+K  ED
Sbjct: 168 FWVMHCLEDRKVELATFLLKKRAED 192

BLAST of IVF0003346 vs. ExPASy TrEMBL
Match: A0A5A7SJ99 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold305G00100 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.1e-15
Identity = 46/86 (53.49%), Postives = 57/86 (66.28%), Query Frame = 0

Query: 1   MEKCIFNMIAQRLV----------DSKYGIERMKALGATPFKGIVVPAEVEAWLSLIEKC 60
           +E+ + + +AQRL+          + KYGIER+KALGAT F G   P + E WL+LIEKC
Sbjct: 41  VEEQLLDRLAQRLILGIRLAQSDSEKKYGIERLKALGATTFVGTTNPVDAEEWLTLIEKC 100

Query: 61  FGVICCSKDRKVELATFLLQKEVEDW 77
           F V  CS+DRKVELA FLLQ   EDW
Sbjct: 101 FKVTRCSEDRKVELAAFLLQNGAEDW 126

BLAST of IVF0003346 vs. ExPASy TrEMBL
Match: A0A5A7UZM6 (Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00750 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.5e-15
Identity = 42/62 (67.74%), Postives = 47/62 (75.81%), Query Frame = 0

Query: 15  DSKYGIERMKALGATPFKGIVVPAEVEAWLSLIEKCFGVICCSKDRKVELATFLLQKEVE 74
           + KYGIER+KALGAT F G   PA+ EAWL+LIEKCF V  C +DRKVELA FLLQ   E
Sbjct: 53  EKKYGIERLKALGATTFAGTTNPADAEAWLTLIEKCFRVTRCPEDRKVELAAFLLQNGAE 112

Query: 75  DW 77
           DW
Sbjct: 113 DW 114

BLAST of IVF0003346 vs. ExPASy TrEMBL
Match: A0A5A7TBS0 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G002900 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.3e-15
Identity = 44/67 (65.67%), Postives = 48/67 (71.64%), Query Frame = 0

Query: 10  AQRLVDSKYGIERMKALGATPFKGIVVPAEVEAWLSLIEKCFGVICCSKDRKVELATFLL 69
           AQ     KYGIER+KALGAT F G   P +VEAWL+LIEKCF V  C +DRKVELA FLL
Sbjct: 142 AQSDPKKKYGIERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRCPEDRKVELAAFLL 201

Query: 70  QKEVEDW 77
           Q   EDW
Sbjct: 202 QNGAEDW 208

BLAST of IVF0003346 vs. ExPASy TrEMBL
Match: A0A5D3CTK6 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00030 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.3e-15
Identity = 44/67 (65.67%), Postives = 48/67 (71.64%), Query Frame = 0

Query: 10  AQRLVDSKYGIERMKALGATPFKGIVVPAEVEAWLSLIEKCFGVICCSKDRKVELATFLL 69
           AQ     KYGIER+KALGAT F G   P +VEAWL+LIEKCF V  C +DRKVELA FLL
Sbjct: 178 AQSDPKKKYGIERLKALGATTFAGTTNPTDVEAWLTLIEKCFRVTRCPEDRKVELAAFLL 237

Query: 70  QKEVEDW 77
           Q   EDW
Sbjct: 238 QNGAEDW 244

BLAST of IVF0003346 vs. NCBI nr
Match: KAA0025769.1 (hypothetical protein E6C27_scaffold34G00120 [Cucumis melo var. makuwa] >TYK09684.1 hypothetical protein E5676_scaffold447G00920 [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (262), Expect = 2.16e-26
Identity = 57/85 (67.06%), Postives = 62/85 (72.94%), Query Frame = 0

Query: 1   MEKCIFNMIAQRLVDS----------KYGIERMKALGATPFKGIVVPAEVEAWLSLIEKC 60
           ME+ IFN IAQRL D           KYGIERMKALGATPFKG V   EVEAWL+LIEKC
Sbjct: 108 MEERIFNKIAQRLADGVRLAQADLEKKYGIERMKALGATPFKGTVDSVEVEAWLTLIEKC 167

Query: 61  FGVICCSKDRKVELATFLLQKEVED 75
           F V+ C +DRKVELATFLL+K  ED
Sbjct: 168 FWVMHCLEDRKVELATFLLKKRAED 192

BLAST of IVF0003346 vs. NCBI nr
Match: XP_038882393.1 (uncharacterized protein LOC120073661 [Benincasa hispida])

HSP 1 Score: 93.6 bits (231), Expect = 7.49e-21
Identity = 48/86 (55.81%), Postives = 57/86 (66.28%), Query Frame = 0

Query: 1   MEKCIFNMIAQRLVDS----------KYGIERMKALGATPFKGIVVPAEVEAWLSLIEKC 60
           +E  +F+ I QRLV S          KYGIER KALGA  F+G   PAEVE WL ++EKC
Sbjct: 17  LEDVVFDKIEQRLVASMGSARADSEKKYGIERFKALGAVTFEGTTDPAEVELWLDVVEKC 76

Query: 61  FGVICCSKDRKVELATFLLQKEVEDW 76
           F V+ C +DRK+ LATFLLQKE E W
Sbjct: 77  FNVMSCLEDRKMGLATFLLQKEAEKW 102

BLAST of IVF0003346 vs. NCBI nr
Match: XP_038877203.1 (uncharacterized protein LOC120069501 [Benincasa hispida])

HSP 1 Score: 88.2 bits (217), Expect = 8.72e-20
Identity = 41/62 (66.13%), Postives = 49/62 (79.03%), Query Frame = 0

Query: 15 DSKYGIERMKALGATPFKGIVVPAEVEAWLSLIEKCFGVICCSKDRKVELATFLLQKEVE 74
          + KYGIER+KALGAT F+G   PA+ E W++ IEKCF V+ C K RKV LATFLLQK+VE
Sbjct: 20 EKKYGIERLKALGATNFEGTKDPADAEEWMNQIEKCFKVMRCPKKRKVSLATFLLQKKVE 79

Query: 75 DW 76
          DW
Sbjct: 80 DW 81

BLAST of IVF0003346 vs. NCBI nr
Match: KAA0035024.1 (hypothetical protein E6C27_scaffold57G00740 [Cucumis melo var. makuwa] >TYK02358.1 hypothetical protein E5676_scaffold155G00590 [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 9.52e-20
Identity = 46/83 (55.42%), Postives = 57/83 (68.67%), Query Frame = 0

Query: 2  EKCIFNMIAQRLV--------DSKYGIERMKALGATPFKGIVVPAEVEAWLSLIEKCFGV 61
          E+ +F   +QRLV        + ++GIER+KALGAT F+G   PA VE WLSLIEK FGV
Sbjct: 14 EESMFYRFSQRLVAHFTPYAVNKRFGIERLKALGATTFEGTTNPANVEKWLSLIEKYFGV 73

Query: 62 ICCSKDRKVELATFLLQKEVEDW 76
          + CS +R V+LAT LLQ  VEDW
Sbjct: 74 MKCSVERGVKLATILLQGSVEDW 96

BLAST of IVF0003346 vs. NCBI nr
Match: XP_038896416.1 (uncharacterized protein LOC120084680 [Benincasa hispida])

HSP 1 Score: 88.6 bits (218), Expect = 2.98e-19
Identity = 48/86 (55.81%), Postives = 55/86 (63.95%), Query Frame = 0

Query: 1  MEKCIFNMIAQRLVDS----------KYGIERMKALGATPFKGIVVPAEVEAWLSLIEKC 60
          ME  +F+ I QRL  S          K+GIER+KALGAT F G   P + E WL LIEKC
Sbjct: 1  MEDRVFDRITQRLAASVGSIQNDPEKKFGIERLKALGATTFDGTTDPLDAEIWLGLIEKC 60

Query: 61 FGVICCSKDRKVELATFLLQKEVEDW 76
          F V+ C +D KVELATFLLQK VE W
Sbjct: 61 FKVMRCPEDCKVELATFLLQKGVEKW 86

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SKG03.4e-2067.06Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SJ991.1e-1553.49DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7UZM62.5e-1567.74Gag protease polyprotein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5A7TBS03.3e-1565.67CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
A0A5D3CTK63.3e-1565.67CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
Match NameE-valueIdentityDescription
KAA0025769.12.16e-2667.06hypothetical protein E6C27_scaffold34G00120 [Cucumis melo var. makuwa] >TYK09684... [more]
XP_038882393.17.49e-2155.81uncharacterized protein LOC120073661 [Benincasa hispida][more]
XP_038877203.18.72e-2066.13uncharacterized protein LOC120069501 [Benincasa hispida][more]
KAA0035024.19.52e-2055.42hypothetical protein E6C27_scaffold57G00740 [Cucumis melo var. makuwa] >TYK02358... [more]
XP_038896416.12.98e-1955.81uncharacterized protein LOC120084680 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0003346.1IVF0003346.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043170 macromolecule metabolic process
biological_process GO:0006807 nitrogen compound metabolic process
biological_process GO:0044238 primary metabolic process
molecular_function GO:0005488 binding