IVF0003341 (gene) Melon (IVF77) v1

Overview
NameIVF0003341
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTranspos_assoc domain-containing protein
Locationchr12: 14940464 .. 14940874 (-)
RNA-Seq ExpressionIVF0003341
SyntenyIVF0003341
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGGAGAAAGCATGTTCAATAAAGAGTGGGTATATCTGAATAGGTACAACAACGTAATAATTTATTAGAATACGAATAAAAAGAAGTAGTTTTCCATTTTTAAATGATGAACATTTACATCTTTTTTTAGAGCCACAGATGACTATATGAAAGGTGCATAGGAGTTCGTAGAGAAAGTAAAGAAGGATGCAACAGATGTGGATTTGATTATGTGCCCTTGCAAGGATTGTAGAAACATGAGTCTTCAATCATTTGATGTTGTTTATGAGTATTTAGTAATTAAGGGAATGGACCCAACATATAAGATTTGGTATCATCATGGGGAGGAAGTTTGTGTAAGGGAAGAAATTGAGGATGTAGATATGTTTGATGTATATAACATGTATCAATCCCTTTTTCATGGTTAG

mRNA sequence

ATGTTTGGAGAAAGCATGTTCAATAAAGAGTGGGTATATCTGAATAGGTACAACAACGAGTTCGTAGAGAAAGTAAAGAAGGATGCAACAGATGTGGATTTGATTATGTGCCCTTGCAAGGATTGTAGAAACATGAGTCTTCAATCATTTGATGTTGTTTATGAGTATTTAGTAATTAAGGGAATGGACCCAACATATAAGATTTGGTATCATCATGGGGAGGAAGTTTGTGTAAGGGAAGAAATTGAGGATGTAGATATGTTTGATGTATATAACATGTATCAATCCCTTTTTCATGGTTAG

Coding sequence (CDS)

ATGTTTGGAGAAAGCATGTTCAATAAAGAGTGGGTATATCTGAATAGGTACAACAACGAGTTCGTAGAGAAAGTAAAGAAGGATGCAACAGATGTGGATTTGATTATGTGCCCTTGCAAGGATTGTAGAAACATGAGTCTTCAATCATTTGATGTTGTTTATGAGTATTTAGTAATTAAGGGAATGGACCCAACATATAAGATTTGGTATCATCATGGGGAGGAAGTTTGTGTAAGGGAAGAAATTGAGGATGTAGATATGTTTGATGTATATAACATGTATCAATCCCTTTTTCATGGTTAG

Protein sequence

MFGESMFNKEWVYLNRYNNEFVEKVKKDATDVDLIMCPCKDCRNMSLQSFDVVYEYLVIKGMDPTYKIWYHHGEEVCVREEIEDVDMFDVYNMYQSLFHG
Homology
BLAST of IVF0003341 vs. ExPASy TrEMBL
Match: A0A0A0KCH8 (Transpos_assoc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G237080 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 5.2e-37
Identity = 76/100 (76.00%), Postives = 85/100 (85.00%), Query Frame = 0

Query: 1   MFGESMFNKEWVYLNRYNN-------EFVEKVKKDATDVDLIMCPCKDCRNMSLQSFDVV 60
           MFGE MFNKEWV+LNR  +       EF+EKVKKD T VDLIMCPCKDCR+MS QSFD+V
Sbjct: 1   MFGERMFNKEWVHLNRATDEYMKGAWEFIEKVKKDVTYVDLIMCPCKDCRDMSHQSFDIV 60

Query: 61  YEYLVIKGMDPTYKIWYHHGEEVCVREEIEDVDMFDVYNM 94
           YE+LVIKGMDPTYKI YHHGEEVCV+EE+ED DMFDV+NM
Sbjct: 61  YEHLVIKGMDPTYKILYHHGEEVCVKEEVEDADMFDVFNM 100

BLAST of IVF0003341 vs. ExPASy TrEMBL
Match: A0A5A7UNZ2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold80G00030 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 4.3e-23
Identity = 57/71 (80.28%), Postives = 60/71 (84.51%), Query Frame = 0

Query: 6  MFNKEWVYLNRYNN-------EFVEKVKKDATDVDLIMCPCKDCRNMSLQSFDVVYEYLV 65
          MFNKEWV+LNR  +       EFVEKVKKDATDVDLIMCP KDCRNMS QSFDVVYE+LV
Sbjct: 1  MFNKEWVHLNRATDEYMKGVWEFVEKVKKDATDVDLIMCPSKDCRNMSHQSFDVVYEHLV 60

Query: 66 IKGMDPTYKIW 70
          IKGMDPTYKIW
Sbjct: 61 IKGMDPTYKIW 71

BLAST of IVF0003341 vs. ExPASy TrEMBL
Match: A0A5A7UPM1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold226G00340 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.9e-19
Identity = 48/80 (60.00%), Postives = 59/80 (73.75%), Query Frame = 0

Query: 6  MFNKEWVYLNRYNNE-------FVEKVKKDATDVDLIMCPCKDCRNMSLQSFDVVYEYLV 65
          MF K+WV+LNR  NE       F+++V+     +D I CPCK CRNM+ Q+FDVVYE+LV
Sbjct: 1  MFQKDWVHLNRATNEYLRGAWDFMKQVENMLGGIDKIPCPCKTCRNMNHQTFDVVYEHLV 60

Query: 66 IKGMDPTYKIWYHHGEEVCV 79
          IKGMDPTY+ WYHHGEEV V
Sbjct: 61 IKGMDPTYRFWYHHGEEVPV 80

BLAST of IVF0003341 vs. ExPASy TrEMBL
Match: A0A803PSE2 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.3e-16
Identity = 40/95 (42.11%), Postives = 66/95 (69.47%), Query Frame = 0

Query: 9   KEWVYLNRYNNE-------FVEKVKKDATDVDLIMCPCKDCRNMSLQSFDVVYEYLVIKG 68
           +E+ +  R +NE       FVE ++K+A   + ++CPCK CRN+S Q  +++YE+LVI G
Sbjct: 52  EEFAWYRRASNEYKEGARSFVETIEKEANYPEKLLCPCKFCRNLSHQKVNLLYEHLVING 111

Query: 69  MDPTYKIWYHHGEEVCVREEIEDVDMFDVYNMYQS 97
           +DPTY IW+HHGEE    ++IE+++ FD +N++ +
Sbjct: 112 IDPTYTIWFHHGEEAPRSDDIEEMNSFDAFNLFSA 146

BLAST of IVF0003341 vs. ExPASy TrEMBL
Match: A0A7J6HCI6 (Transpos_assoc domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_011967 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 6.6e-16
Identity = 36/76 (47.37%), Postives = 58/76 (76.32%), Query Frame = 0

Query: 21  FVEKVKKDATDVDLIMCPCKDCRNMSLQSFDVVYEYLVIKGMDPTYKIWYHHGEEVCVRE 80
           FVE ++K+A   + ++CPCK CRN+S Q  +++YE+LVI G+DPTY IW+HHGEE    +
Sbjct: 144 FVETIEKEANYPEKLLCPCKFCRNLSHQKVNLLYEHLVINGIDPTYTIWFHHGEEAPRSD 203

Query: 81  EIEDVDMFDVYNMYQS 97
           +IE+++ FD +N++ +
Sbjct: 204 DIEEMNSFDAFNLFSA 219

BLAST of IVF0003341 vs. NCBI nr
Match: KGN47253.1 (hypothetical protein Csa_017000 [Cucumis sativus])

HSP 1 Score: 164 bits (414), Expect = 3.14e-50
Identity = 76/100 (76.00%), Postives = 85/100 (85.00%), Query Frame = 0

Query: 1   MFGESMFNKEWVYLNRYNNE-------FVEKVKKDATDVDLIMCPCKDCRNMSLQSFDVV 60
           MFGE MFNKEWV+LNR  +E       F+EKVKKD T VDLIMCPCKDCR+MS QSFD+V
Sbjct: 1   MFGERMFNKEWVHLNRATDEYMKGAWEFIEKVKKDVTYVDLIMCPCKDCRDMSHQSFDIV 60

Query: 61  YEYLVIKGMDPTYKIWYHHGEEVCVREEIEDVDMFDVYNM 93
           YE+LVIKGMDPTYKI YHHGEEVCV+EE+ED DMFDV+NM
Sbjct: 61  YEHLVIKGMDPTYKILYHHGEEVCVKEEVEDADMFDVFNM 100

BLAST of IVF0003341 vs. NCBI nr
Match: KAA0055179.1 (uncharacterized protein E6C27_scaffold80G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 117 bits (293), Expect = 4.74e-29
Identity = 57/71 (80.28%), Postives = 60/71 (84.51%), Query Frame = 0

Query: 6  MFNKEWVYLNRYNNE-------FVEKVKKDATDVDLIMCPCKDCRNMSLQSFDVVYEYLV 65
          MFNKEWV+LNR  +E       FVEKVKKDATDVDLIMCP KDCRNMS QSFDVVYE+LV
Sbjct: 1  MFNKEWVHLNRATDEYMKGVWEFVEKVKKDATDVDLIMCPSKDCRNMSHQSFDVVYEHLV 60

Query: 66 IKGMDPTYKIW 69
          IKGMDPTYKIW
Sbjct: 61 IKGMDPTYKIW 71

BLAST of IVF0003341 vs. NCBI nr
Match: KAA0056266.1 (uncharacterized protein E6C27_scaffold226G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (261), Expect = 1.03e-23
Identity = 48/80 (60.00%), Postives = 59/80 (73.75%), Query Frame = 0

Query: 6  MFNKEWVYLNRYNNE-------FVEKVKKDATDVDLIMCPCKDCRNMSLQSFDVVYEYLV 65
          MF K+WV+LNR  NE       F+++V+     +D I CPCK CRNM+ Q+FDVVYE+LV
Sbjct: 1  MFQKDWVHLNRATNEYLRGAWDFMKQVENMLGGIDKIPCPCKTCRNMNHQTFDVVYEHLV 60

Query: 66 IKGMDPTYKIWYHHGEEVCV 78
          IKGMDPTY+ WYHHGEEV V
Sbjct: 61 IKGMDPTYRFWYHHGEEVPV 80

BLAST of IVF0003341 vs. NCBI nr
Match: XP_024017632.1 (uncharacterized protein LOC112090485 [Morus notabilis])

HSP 1 Score: 104 bits (259), Expect = 1.93e-23
Identity = 47/101 (46.53%), Postives = 68/101 (67.33%), Query Frame = 0

Query: 5   SMFNKEWVYLNRYNNE-------FVEKVKKDATDVDLIMCPCKDCRNMSLQSFDVVYEYL 64
            M +K+WV  NR   E       FV+ V+K+    + ++CPCK+CRN+S Q  ++VYE+L
Sbjct: 8   KMLDKDWVRDNRLTVEYMQSAQKFVKTVEKNFGYPEKLLCPCKECRNLSHQRGNIVYEHL 67

Query: 65  VIKGMDPTYKIWYHHGEEVCVREEIEDVDMFDVYNMYQSLF 98
           VI GMDPTY  W+HHGEEV   EE+E+VD  D+Y +Y++ +
Sbjct: 68  VINGMDPTYTTWFHHGEEVNTNEELENVDKNDIYELYKAAY 108

BLAST of IVF0003341 vs. NCBI nr
Match: KAF7113242.1 (hypothetical protein RHSIM_RhsimUnG0146400 [Rhododendron simsii])

HSP 1 Score: 98.2 bits (243), Expect = 2.83e-21
Identity = 45/101 (44.55%), Postives = 66/101 (65.35%), Query Frame = 0

Query: 5   SMFNKEWVYLNRYNNE-------FVEKVKKDATDVDLIMCPCKDCRNMSLQSFDVVYEYL 64
            M +K+WV+LNR  +E       FVE   ++A  +  I+CPCK CRN+S    + VYE+L
Sbjct: 56  KMVDKDWVHLNRCIDEYMNAALKFVEMANQNAGYIGKILCPCKYCRNLSHHCVNDVYEHL 115

Query: 65  VIKGMDPTYKIWYHHGEEVCVREEIEDVDMFDVYNMYQSLF 98
           VI GMDPTY  W+HHGEE  V ++ ++V+M D +N+Y + +
Sbjct: 116 VINGMDPTYTTWFHHGEEPSVVQKPKEVEMSDAHNLYSATY 156

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KCH85.2e-3776.00Transpos_assoc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G237... [more]
A0A5A7UNZ24.3e-2380.28Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UPM12.9e-1960.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A803PSE22.3e-1642.11Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A7J6HCI66.6e-1647.37Transpos_assoc domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_011... [more]
Match NameE-valueIdentityDescription
KGN47253.13.14e-5076.00hypothetical protein Csa_017000 [Cucumis sativus][more]
KAA0055179.14.74e-2980.28uncharacterized protein E6C27_scaffold80G00030 [Cucumis melo var. makuwa][more]
KAA0056266.11.03e-2360.00uncharacterized protein E6C27_scaffold226G00340 [Cucumis melo var. makuwa][more]
XP_024017632.11.93e-2346.53uncharacterized protein LOC112090485 [Morus notabilis][more]
KAF7113242.12.83e-2144.55hypothetical protein RHSIM_RhsimUnG0146400 [Rhododendron simsii][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029480Transposase-associated domainPFAMPF13963Transpos_assoccoord: 18..74
e-value: 3.9E-14
score: 52.6

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0003341.2IVF0003341.2mRNA