IVF0003297 (gene) Melon (IVF77) v1

Overview
NameIVF0003297
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related pol polyprotein from transposon tnt 1-94
Locationchr08: 6429308 .. 6435696 (-)
RNA-Seq ExpressionIVF0003297
SyntenyIVF0003297
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGCTCCATAACTTCTTTGAGACAGATGGGGTTGGATGGGTTAAACTCATGGACAATAGACTAAAACCAAGCAAAAACTCCGAGGTATTATTTGTCTTTGTGTGTTTGTGTAAATCTAATTAAACCTTTGGACGAAGCTAACTTGTGTGTGACTTAACTAGTCAACATGTATGCTATCGACCTAGATGTCAAAATTTGATACTGTATTTAGAAATTTATGGGACGGATTTGTAGTAATTGATCTTGTTGCTCTCTTTTCGAGAAGTGATTCTAATTTGATTTTGATGGCTTTAAAACCGTATTCATAGATTAACCTTGATCACACGTGTATTTAGGGTTAGAAGATAAGAATTAATCCAACCTTTTTGAGATGAGATGGAGGGAAGAAAAGGGAATGAAGAAGATAATCAAGAAGAGGTGAAATAATTTTCTTAATCTTTATAATTATGATTAATTGGGATTGATTACTAGTTAAAATCAGACATCAAATCAACATGTTGATTTGAAAAATACAAAAGAAAGTTGAGTAAAGAACCGTTGTTAACAAATCGAATCAAATGGTGAAATTGATTGAAATGGACTAAAACATAATGAATAATACTGAAACTAATCAAATCAACAATGATGATTAATAGAGCTGGAGAGCTTTTTCATTCGCTTTTCAAATTGCATAAAAACAAACCTAGAAATTATTTAGCCAAATAGATTGAATCAACCTACCTCAATTGGGTTGTTGTTTGTTTTTATTTGGAGTTGCAATCTTATAGTTTAGGCAAGGCATGTGAAAAGTTTATTAAGATATGAACCTTTTTGGGTGAAACCATGAGGATCAAATGATCTAAGCAACTATACATTTCATATGATCAATGATTGTACATAGAGATCACATCAGATCAAACCAACCATATCCCATATCGCTAAATGCAATAATGCTTCAATTGAGGTCTAGATTGGCCCTTGACCATATTTCTTTGTTTTTGTCTATCAATTTATATTGGAACAGTAAATATAACAATATGACTCAAAGTAATTATAAATATGATTTATCAAAGTTTAGATACGACAAAAAATGCAAAAATGCAAAAAAGAGAAAAAAGAAAAAGAATCGTAGATACGACAAGACAAGAGTTATATAGTTTTTGAAGCCTACCAGTTAAGCATTATATCATTGAAGATTGTGTCAATAAGAGTTTATCAACGATGGATCGTATCATTGTTAAATTTTGTTATATTTGCAACTTTTTAAAAATATTATATACTCAATTATTATTCTTAAAAAAATGCTACCTAGTGTAATTATCCATTTATAGTTATTTTTTGTTTTTCAAAAAAAGAATCCTAAGTTTTGTCACTTGTTTAAAATAATACTTTTTTTTAAGTTGCACTATTGTCTTTTAACTTTTCTAAAATATTTGAAGTTTTTTCTTTTGAATTAAAAATCATTTAGAATGTATGACAAAAACTTTCTGCCTAGAATAATATGAAAATAATTAAGATAACAATAATTTAAGATGACAATTATTGAGATAACAATAATTTGAGACGAAACTCTATTTTAAGTTTTAATTTCTATCTAAAGTTCTAATAAATTTCGGAGGATAATTATGAAGAGTTTACTAAAGATTATTGCACATGGTTAATTTTCAAGTAAATGGCTAAGTTGATGAACAACAAATTTAGTAGTATTGCATCATCTGAAAATACATGGAAGTAGATGGCTAAGTTTACGAATATTTTCGTTTTCTTTCGTATTTTAGTCTAATGTCAACTATTGGGTTTGAATTCTCTTTACATCTACGGAATAAGTTTGAGTTTCACAAAATGTGAATTAGTTAAGAGACTCAAACACTTAATTATATGTTAGTTTTGCTATGTCGAGATTTACCCGAAAGTCAGAGGGGGAAAAGAAACACAAGGGATTTATGCATTGGACTTGAGTTTGTAATAAATAAATACCAATCTTCTCTTCTTCGGACTGAAGTTACTTCTTCTTTTCTAGGCTCTCATTTTGTTACCAAGAAATAGAGACTGTCAACCTAAAAGGAAAAGGGCACAGAAAAAAGGACACAACAAATAAGGTGGTTCATTCTTCGTTCATCCATTCATTGGCCTTATCTTCTTAGGCTATGACCTAAACCTAAACCAAACATGAAACAACCTCGTTGTTTGAAGCCTAAACTATGATGCTTGGTTTTGAAATCAGTCAAAATGAATAAAACTTTTGAGTTTTATGGTGCAGGGCTAGGGCTAGGGTTATTGCGCTTAAGTTGATCAAAACACTTACGGATACAAAAATCTTTTGGGTTTTGAGAATTGCATATTATTCAAGCAATCAAACAATCATTTCTTTTTTTTTCAGACAGCAGTAACCTTTGTCTATTGGGACCCTTCTTCTTCCCTTCTTTTCATGTGAAGGGCTGAGGAGAGGAGAGGAGAGATCATTTTGAAAGGCAAAATTAAAGGCCAAAGCTTCTTTTTTTCTGATATGGTAAAAGAGAGAGAGATTCTTTCTCTAGTAGCTTAGCCATAGGCTCAGATCCTTCTCTATAATGCTGTCACCACAGTCTTCTCTTTTCTGCCATTTGGGTTCTCTCTTTTTAAAACCAAATGTTCATGTTTAGCTTTTTGATTATATCCTTTATCCTTAAAAAAAACCAAATTAGATTATTAGTAAGAAGAGATGGAGATCTAAATATGTTGGGTTTTTGCATTGCACCTCTGATATATATTAAGTTCTACCAACAAAAGAAAAAGAAAAAGAAAAAGAAAGTGTTAGATAGATATGTGAAGGACACATCAATAATTTGATAGATTGACCTAAGAATTGGGTCACAATGTGTTTGACATGTTTTTTCAAATAAAGTTCTATAATCATTTTCAGACCTTTTTCTTTAATATTTTCTTTTCATTTCTTAAACTCCATCTTCCCTGTCTTCTTCCTCACAGTATTTTCTTTTCTCTCCAGATTCTTCCCTATGTATATTTCGTCTCTAAAATGGTAACGTTCTTTACTCCGTACGCAACAACAATGACGACATCTTGAATTTTTTAGATGCCAAACTAACCAAGTCCATGCAGCAGGAGGAAAAAGAAAAGCAAAACTGAAAGCGAGCGAGAAAAACATAGTAGTATGGAAAAAGGCTCGGTGACAAGGAAAAGAATAGAAAGCTTTGTTTTGAAATAGCTAGTCAAATCTCATTTTGTTTGAAAAGATATTTAGTGATATGTATGAGAAATGTGAGTTAACATGAATAATAGGCAATAAACCTTGTTAATGTAAGTTGAAACAAATGTTGGACGAGATTTTTTACCATTCAACTTAACTCTCCCAAATTACCTAAGTTGTCAAACATTCTCAAATTAAGTCCAATAATTATATATCCTAATGATTCATAATAGAATCATTTTCTTACAAAAAGAAATTTATAATAGAAGATAGTACAGTGTTGAAACAACAAAATTTCATGATACTATTCATTTACTTTAATATACATGTACGAAATGACTTTATTTTCAAAATTTACAACCGAAAAGGTTTTATGTTAATAGAGATATTATCCTTCATATACGTACACAAACAACAATACAACCATTTAAAACGAACATAGAGGGTTTATGCATCCGTGCGATTTGAGTTCAAAACGCAAGTAGGAGAAAGAAGAAGGGATATGTTTGGTTGGAGGGAATGAATGGGAAATAAACACAAGATGGAAAAAAGTACTACAGAAATGTCAAAAGAGAGAGAGGAAAGTGTCAAAAAAGAAAAAGTGCCAAAAGGAAGGCAACGAGCAGAAGCAAATCAAAAGGCATTTGAGATGTTTTGTTGAATGCCAAATTGACATTGGCATTGGCATTGGCTTTGCCTTTGTCCCTTTCCCCTTTTGTTTGCTAATTCCCACTATGAGATACAATGCACACTCAAACCTATAATTGGGGGAATGGATCAATGCCAATTCCATCATTCTTATTTTACTAAAATATAACTTCCCATTTTTCCATTTTCAATTTTCAAATCCAACGGTTACTTTCTTTCTATTGCTTTTAAAAATGATAGACTAAATTTTAAATGATTAGAGTTCGAAAAAGAAAACTCACGCACGAGTTACATGACCTTGTTCTCGTTAATTTCATGGCCACAAAATTTAAATTTTAGGGAATACTTCAATTTCAAATTTCAACTCTAAAGTTATCACGTATTGATTTGGGCTTAACATTCATGTTTGTCCTAAGAAAATGTAATAAATCAATGATAATTTAAAGAAGTGAGTCATGTTTGATTGAATTTGTTGTTGTTTACCAATGTTTCATAATTCTAATGAATCGTGAGACCCACCTCTAAATCTGTAATCACAAAGAACCTACATGTTCAATCTTATTATGTTAAAAAATTAGGTGAGATCCACTGTATTTGAATATGTACATTTATTATTAGGGGCGAGTGGGTATATAGCATTTGACCCAAAATATATTAAGGATATAGCAAAAATTATAAAAAATTGCAAATATGGCAATTTTTAATAAAAAAGACGAAATTACCCCTACATATATTTTCTTACACTTTCTTCACGTTTCAAGCAGATTCTTCGCGAGTGGGAAAGTGCAGACGATTTCAAGCACATTGTGGAGTCTGCGTTTCATCCTCTTCCTATTTTCTTCCACTTTCTTCCTATTCCCATTTGGTTTTCCGGTGCCGGTACTTTCCTCCTCTTTCTATTTTCTTCCACTTCTTTCTACTCCCATTTGGTTTTCCGGTGCTGGTGCCGTTCTGCCCTACTACTTTCTTCTATTTTGTTTTCCTTTCGCCACACTGCAGGTACTATTTTCTTCTATTTTGTTTTCATTCCACTGCACTACGTTCTACGCTATGTTTTTCAGTTTGTGTCTATCAATGATGTGTTTCTATCACTGATTTAGAGTTTTAACTTATTTATGTTGAAATGTTTAACATGCAGATCTGTTTTAGGTTTGTGTGTTAGTGTATAGGGTTAGAGTCTATCGGTGATATATTTGTATCACTGATAATCTTGAGGGGTATTTAGTTTGTTTGCATCGGGATGTTAGTAAATAACCATTTAACGGGCATTGTTGTTGCCTAGGGTCTATCGTTGATATGTTTCAATCCCTGATAGCCTTCGAAGATGTTTAGCCTGTTTGACTTGGAAAATTAGTAAAAGCTCTAGTCTAATTTAGATTTTGTGTGTTATGTTGCTTAGGGTCTGTCAGTGATAAGTTTCTATCACTGATTAATGAATTTGGAGGATGTTTAACTGGTTTATGTTGGAATATATAACATGCTTATCTGTTTTAGGTTTGTGTGTTAGTGTATAGGGTTAGGGTCTATCAGTGATAATTTAGTTTAATGTATATTTTTAGTTTAGTGTATAGGTTTGTGTGTTAGTGTATATTTTTATGTGATGTTGTTTATGTTCTATCAGTGATATGTTTCTATCAGCTTGAAGGATGTTTTACTTTGTTTGTGTTGGATTGTTATTATATGTTTGTATCACTGATATGTTTGGGGGATGTTTAGTTCATTGGGTTGATGTGTTTGTTGTAATTTTAATAGATGGATAAGAAAAAAGATATTAATAGAGGAGATTGTTAGTTTGTTACTTTCACTGACAGAAGTGGTAAATCAAAGACTTTCGCACAAATGTGAAAGTGAAAAACAATCTCAAGAGCCCTTGGAAAAGAATCCTCCTCCACCAATAAGTTTAGAAATTATTGATGTTGATGTTGATAAAGAGAAAGAGGTAAAATTATTAATAGTTCTTTTACTTTTATTTTTTCCAAGACTATTATGTTTGTGTGTGAAAAGTCTATCAATGGTAGAATTGTATCAATGATAGACTATTCTTTCTATGATTTAAGTCTATTAGTGATAGACTATTCTGAAATCTCAATTCTGATTCAAAAGTCTATCAATGATAGGATATTGACAATTTCTATAATTCTTTTCATTGCAATACTAATATTAATATCTACAAAAGATTGAAGATAATGAGGAAACCGAGGAAGATGATAATCATCGTGAAAATAAGTCAAAAATGCTGCATGACACATCAAACAAAGTGAAGGTATTATAATAATCACATTTTGTTGTTTTATGATAGACTTAATGTATATATGTAGATAAACTCTAATTCAATATTATATATTTTCAGGTTGTTCAAGAAAAGGCAAAAGTGAAAATTATGGAAATAGCGACGAATATTGAAAAAGCTAAGCCGAAGAGACAACCTAAACCATCAAAGAAAGTGTTGGAGAATGTGAAAGAACAAAAGAATGTAAGAGGCAAGAAGAATGATTCTCCAAAACCAACAAGACATTCTCCTAGAATAAAGGATCTAGCACCTAGTTTTGATTTGCAAATCTCTCAATTATAA

mRNA sequence

ATGCAGCTCCATAACTTCTTTGAGACAGATGGGGTTGGATGGGTTAAACTCATGGACAATAGACTAAAACCAAGCAAAAACTCCGAGATTCTTCGCGAGTGGGAAAGTGCAGACGATTTCAAGCACATTGTGGAGTCTGCGTTTCATCCTCTTCCTATTTTCTTCCACTTTCTTCCTATTCCCATTTGGTTTTCCGGTGCCGAAGTGGTAAATCAAAGACTTTCGCACAAATGTGAAAGTGAAAAACAATCTCAAGAGCCCTTGGAAAAGAATCCTCCTCCACCAATAAGTTTAGAAATTATTGATGTTGATGTTGATAAAGAGAAAGAGATTGAAGATAATGAGGAAACCGAGGAAGATGATAATCATCGTGAAAATAAGTCAAAAATGCTGCATGACACATCAAACAAAGTGAAGGTTGTTCAAGAAAAGGCAAAAGTGAAAATTATGGAAATAGCGACGAATATTGAAAAAGCTAAGCCGAAGAGACAACCTAAACCATCAAAGAAAGTGTTGGAGAATGTGAAAGAACAAAAGAATGTAAGAGGCAAGAAGAATGATTCTCCAAAACCAACAAGACATTCTCCTAGAATAAAGGATCTAGCACCTAGTTTTGATTTGCAAATCTCTCAATTATAA

Coding sequence (CDS)

ATGCAGCTCCATAACTTCTTTGAGACAGATGGGGTTGGATGGGTTAAACTCATGGACAATAGACTAAAACCAAGCAAAAACTCCGAGATTCTTCGCGAGTGGGAAAGTGCAGACGATTTCAAGCACATTGTGGAGTCTGCGTTTCATCCTCTTCCTATTTTCTTCCACTTTCTTCCTATTCCCATTTGGTTTTCCGGTGCCGAAGTGGTAAATCAAAGACTTTCGCACAAATGTGAAAGTGAAAAACAATCTCAAGAGCCCTTGGAAAAGAATCCTCCTCCACCAATAAGTTTAGAAATTATTGATGTTGATGTTGATAAAGAGAAAGAGATTGAAGATAATGAGGAAACCGAGGAAGATGATAATCATCGTGAAAATAAGTCAAAAATGCTGCATGACACATCAAACAAAGTGAAGGTTGTTCAAGAAAAGGCAAAAGTGAAAATTATGGAAATAGCGACGAATATTGAAAAAGCTAAGCCGAAGAGACAACCTAAACCATCAAAGAAAGTGTTGGAGAATGTGAAAGAACAAAAGAATGTAAGAGGCAAGAAGAATGATTCTCCAAAACCAACAAGACATTCTCCTAGAATAAAGGATCTAGCACCTAGTTTTGATTTGCAAATCTCTCAATTATAA

Protein sequence

MQLHNFFETDGVGWVKLMDNRLKPSKNSEILREWESADDFKHIVESAFHPLPIFFHFLPIPIWFSGAEVVNQRLSHKCESEKQSQEPLEKNPPPPISLEIIDVDVDKEKEIEDNEETEEDDNHRENKSKMLHDTSNKVKVVQEKAKVKIMEIATNIEKAKPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRHSPRIKDLAPSFDLQISQL
Homology
[Close]
BLAST of IVF0003297 vs. ExPASy TrEMBL
Match: A0A5A7VIA9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1081G00090 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 6.6e-66
Identity = 140/153 (91.50%), Postives = 147/153 (96.08%), Query Frame = 0 

Query: 60  IPIWFSGAEVVNQRLSHKCESEKQSQEPLEKNPPPPISLEIIDVDVDKEKEIEDNEETEE 119
           + +  S  EVVNQRLSHKCESEKQSQEPLEKNPPPPISLE+ID DVDKEKEIEDNEETEE
Sbjct: 186 VRLLLSLTEVVNQRLSHKCESEKQSQEPLEKNPPPPISLEMIDADVDKEKEIEDNEETEE 245

Query: 120 DDNHRENKSKMLHDTSNKVKVVQEKAKVKIMEIATNIEKAKPKRQPKPSKKVLENVKEQK 179
           DDNHRENKSKM+HDTSNKVKVVQEKAKVKIMEIATNIEKA+PKRQPKPSKKVLENVKEQK
Sbjct: 246 DDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQK 305

Query: 180 NVRGKKNDSPKPTRHSPRIKDLAPSFDLQISQL 213
           NVRGKKNDSPKPTR+SPRI+DLAPSFDLQISQL
Sbjct: 306 NVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL 338

[Close]
BLAST of IVF0003297 vs. ExPASy TrEMBL
Match: A0A5D3DFX6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3009G00010 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 6.6e-66
Identity = 140/153 (91.50%), Postives = 147/153 (96.08%), Query Frame = 0 

Query: 60  IPIWFSGAEVVNQRLSHKCESEKQSQEPLEKNPPPPISLEIIDVDVDKEKEIEDNEETEE 119
           + +  S  EVVNQRLSHKCESEKQSQEPLEKNPPPPISLE+ID DVDKEKEIEDNEETEE
Sbjct: 186 VRLLLSLTEVVNQRLSHKCESEKQSQEPLEKNPPPPISLEMIDADVDKEKEIEDNEETEE 245

Query: 120 DDNHRENKSKMLHDTSNKVKVVQEKAKVKIMEIATNIEKAKPKRQPKPSKKVLENVKEQK 179
           DDNHRENKSKM+HDTSNKVKVVQEKAKVKIMEIATNIEKA+PKRQPKPSKKVLENVKEQK
Sbjct: 246 DDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQK 305

Query: 180 NVRGKKNDSPKPTRHSPRIKDLAPSFDLQISQL 213
           NVRGKKNDSPKPTR+SPRI+DLAPSFDLQISQL
Sbjct: 306 NVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL 338

[Close]
BLAST of IVF0003297 vs. ExPASy TrEMBL
Match: A0A5A7VDY1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00110 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.9e-65
Identity = 139/153 (90.85%), Postives = 146/153 (95.42%), Query Frame = 0 

Query: 60  IPIWFSGAEVVNQRLSHKCESEKQSQEPLEKNPPPPISLEIIDVDVDKEKEIEDNEETEE 119
           + +  S  EVVNQRLSHKCESEKQSQEPL KNPPPPISLE+ID DVDKEKEIEDNEETEE
Sbjct: 62  VRLLLSLTEVVNQRLSHKCESEKQSQEPLVKNPPPPISLEMIDADVDKEKEIEDNEETEE 121

Query: 120 DDNHRENKSKMLHDTSNKVKVVQEKAKVKIMEIATNIEKAKPKRQPKPSKKVLENVKEQK 179
           DDNHRENKSKM+HDTSNKVKVVQEKAKVKIMEIATNIEKA+PKRQPKPSKKVLENVKEQK
Sbjct: 122 DDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQK 181

Query: 180 NVRGKKNDSPKPTRHSPRIKDLAPSFDLQISQL 213
           NVRGKKNDSPKPT+HSPRI+DLAPSFDLQISQL
Sbjct: 182 NVRGKKNDSPKPTKHSPRIRDLAPSFDLQISQL 214

[Close]
BLAST of IVF0003297 vs. ExPASy TrEMBL
Match: A0A5D3CTS8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00380 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 3.3e-65
Identity = 138/145 (95.17%), Postives = 144/145 (99.31%), Query Frame = 0 

Query: 68  EVVNQRLSHKCESEKQSQEPLEKNPPPPISLEIIDVDVDKEKEIEDNEETEEDDNHRENK 127
           EVVNQRLSHKCESEKQSQ+PLEKNPPPPISLE+ID DVDKEKEIEDNEETEEDDNHRENK
Sbjct: 70  EVVNQRLSHKCESEKQSQKPLEKNPPPPISLEMIDADVDKEKEIEDNEETEEDDNHRENK 129

Query: 128 SKMLHDTSNKVKVVQEKAKVKIMEIATNIEKAKPKRQPKPSKKVLENVKEQKNVRGKKND 187
           SKM+HDTSNKVKVVQEKAKVKIMEIATNIEKA+PKRQPKPSKKVLENVKEQKNVRGKKND
Sbjct: 130 SKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKND 189

Query: 188 SPKPTRHSPRIKDLAPSFDLQISQL 213
           SPKPTR+SPRI+DLAPSFDLQISQL
Sbjct: 190 SPKPTRYSPRIRDLAPSFDLQISQL 214

[Close]
BLAST of IVF0003297 vs. ExPASy TrEMBL
Match: A0A5A7TDE0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G003290 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 1.1e-63
Identity = 135/143 (94.41%), Postives = 140/143 (97.90%), Query Frame = 0 

Query: 68  EVVNQRLSHKCESEKQSQEPLEKNPPPPISLEIIDVDVDKEKEIEDNEETEEDDNHRENK 127
           EVVNQRLSHKCESEKQSQ+PLEKNPPPPISLE+ID DVDKEKEIEDNEETEEDDNHRENK
Sbjct: 70  EVVNQRLSHKCESEKQSQKPLEKNPPPPISLEMIDADVDKEKEIEDNEETEEDDNHRENK 129

Query: 128 SKMLHDTSNKVKVVQEKAKVKIMEIATNIEKAKPKRQPKPSKKVLENVKEQKNVRGKKND 187
           SKM+HDTSNKVKVVQEKAKVKIMEIATNIEK +PKRQ KPSKKVLENVKEQKN+RGKKND
Sbjct: 130 SKMVHDTSNKVKVVQEKAKVKIMEIATNIEKTRPKRQSKPSKKVLENVKEQKNIRGKKND 189

Query: 188 SPKPTRHSPRIKDLAPSFDLQIS 211
           SPKPTRHSPRIKDLAPSFDLQIS
Sbjct: 190 SPKPTRHSPRIKDLAPSFDLQIS 212

[Close]
BLAST of IVF0003297 vs. NCBI nr
Match: KAA0065297.1 (hypothetical protein E6C27_scaffold1023G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 258 bits (658), Expect = 7.65e-84
Identity = 139/153 (90.85%), Postives = 146/153 (95.42%), Query Frame = 0 

Query: 60  IPIWFSGAEVVNQRLSHKCESEKQSQEPLEKNPPPPISLEIIDVDVDKEKEIEDNEETEE 119
           + +  S  EVVNQRLSHKCESEKQSQEPL KNPPPPISLE+ID DVDKEKEIEDNEETEE
Sbjct: 62  VRLLLSLTEVVNQRLSHKCESEKQSQEPLVKNPPPPISLEMIDADVDKEKEIEDNEETEE 121

Query: 120 DDNHRENKSKMLHDTSNKVKVVQEKAKVKIMEIATNIEKAKPKRQPKPSKKVLENVKEQK 179
           DDNHRENKSKM+HDTSNKVKVVQEKAKVKIMEIATNIEKA+PKRQPKPSKKVLENVKEQK
Sbjct: 122 DDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQK 181

Query: 180 NVRGKKNDSPKPTRHSPRIKDLAPSFDLQISQL 212
           NVRGKKNDSPKPT+HSPRI+DLAPSFDLQISQL
Sbjct: 182 NVRGKKNDSPKPTKHSPRIRDLAPSFDLQISQL 214

[Close]
BLAST of IVF0003297 vs. NCBI nr
Match: TYK15261.1 (hypothetical protein E5676_scaffold892G00380 [Cucumis melo var. makuwa])

HSP 1 Score: 257 bits (657), Expect = 1.08e-83
Identity = 139/148 (93.92%), Postives = 145/148 (97.97%), Query Frame = 0 

Query: 65  SGAEVVNQRLSHKCESEKQSQEPLEKNPPPPISLEIIDVDVDKEKEIEDNEETEEDDNHR 124
           S  EVVNQRLSHKCESEKQSQ+PLEKNPPPPISLE+ID DVDKEKEIEDNEETEEDDNHR
Sbjct: 67  SLTEVVNQRLSHKCESEKQSQKPLEKNPPPPISLEMIDADVDKEKEIEDNEETEEDDNHR 126

Query: 125 ENKSKMLHDTSNKVKVVQEKAKVKIMEIATNIEKAKPKRQPKPSKKVLENVKEQKNVRGK 184
           ENKSKM+HDTSNKVKVVQEKAKVKIMEIATNIEKA+PKRQPKPSKKVLENVKEQKNVRGK
Sbjct: 127 ENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGK 186

Query: 185 KNDSPKPTRHSPRIKDLAPSFDLQISQL 212
           KNDSPKPTR+SPRI+DLAPSFDLQISQL
Sbjct: 187 KNDSPKPTRYSPRIRDLAPSFDLQISQL 214

[Close]
BLAST of IVF0003297 vs. NCBI nr
Match: KAA0031317.1 (uncharacterized protein E6C27_scaffold139G00700 [Cucumis melo var. makuwa] >KAA0034561.1 uncharacterized protein E6C27_scaffold65G005770 [Cucumis melo var. makuwa] >KAA0035329.1 uncharacterized protein E6C27_scaffold228G001300 [Cucumis melo var. makuwa] >KAA0037560.1 uncharacterized protein E6C27_scaffold277G001820 [Cucumis melo var. makuwa] >KAA0038033.1 uncharacterized protein E6C27_scaffold36G002310 [Cucumis melo var. makuwa])

HSP 1 Score: 259 bits (662), Expect = 1.04e-82
Identity = 140/153 (91.50%), Postives = 147/153 (96.08%), Query Frame = 0 

Query: 60  IPIWFSGAEVVNQRLSHKCESEKQSQEPLEKNPPPPISLEIIDVDVDKEKEIEDNEETEE 119
           + +  S  EVVNQRLSHKCESEKQSQEPLEKNPPPPISLE+ID DVDKEKEIEDNEETEE
Sbjct: 186 VRLLLSLTEVVNQRLSHKCESEKQSQEPLEKNPPPPISLEMIDADVDKEKEIEDNEETEE 245

Query: 120 DDNHRENKSKMLHDTSNKVKVVQEKAKVKIMEIATNIEKAKPKRQPKPSKKVLENVKEQK 179
           DDNHRENKSKM+HDTSNKVKVVQEKAKVKIMEIATNIEKA+PKRQPKPSKKVLENVKEQK
Sbjct: 246 DDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQK 305

Query: 180 NVRGKKNDSPKPTRHSPRIKDLAPSFDLQISQL 212
           NVRGKKNDSPKPTR+SPRI+DLAPSFDLQISQL
Sbjct: 306 NVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL 338

[Close]
BLAST of IVF0003297 vs. NCBI nr
Match: TYK22453.1 (uncharacterized protein E5676_scaffold3009G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 259 bits (662), Expect = 1.04e-82
Identity = 140/153 (91.50%), Postives = 147/153 (96.08%), Query Frame = 0 

Query: 60  IPIWFSGAEVVNQRLSHKCESEKQSQEPLEKNPPPPISLEIIDVDVDKEKEIEDNEETEE 119
           + +  S  EVVNQRLSHKCESEKQSQEPLEKNPPPPISLE+ID DVDKEKEIEDNEETEE
Sbjct: 186 VRLLLSLTEVVNQRLSHKCESEKQSQEPLEKNPPPPISLEMIDADVDKEKEIEDNEETEE 245

Query: 120 DDNHRENKSKMLHDTSNKVKVVQEKAKVKIMEIATNIEKAKPKRQPKPSKKVLENVKEQK 179
           DDNHRENKSKM+HDTSNKVKVVQEKAKVKIMEIATNIEKA+PKRQPKPSKKVLENVKEQK
Sbjct: 246 DDNHRENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQK 305

Query: 180 NVRGKKNDSPKPTRHSPRIKDLAPSFDLQISQL 212
           NVRGKKNDSPKPTR+SPRI+DLAPSFDLQISQL
Sbjct: 306 NVRGKKNDSPKPTRYSPRIRDLAPSFDLQISQL 338

[Close]
BLAST of IVF0003297 vs. NCBI nr
Match: KAA0039507.1 (hypothetical protein E6C27_scaffold64G003290 [Cucumis melo var. makuwa])

HSP 1 Score: 252 bits (644), Expect = 9.60e-82
Identity = 136/146 (93.15%), Postives = 141/146 (96.58%), Query Frame = 0 

Query: 65  SGAEVVNQRLSHKCESEKQSQEPLEKNPPPPISLEIIDVDVDKEKEIEDNEETEEDDNHR 124
           S  EVVNQRLSHKCESEKQSQ+PLEKNPPPPISLE+ID DVDKEKEIEDNEETEEDDNHR
Sbjct: 67  SLTEVVNQRLSHKCESEKQSQKPLEKNPPPPISLEMIDADVDKEKEIEDNEETEEDDNHR 126

Query: 125 ENKSKMLHDTSNKVKVVQEKAKVKIMEIATNIEKAKPKRQPKPSKKVLENVKEQKNVRGK 184
           ENKSKM+HDTSNKVKVVQEKAKVKIMEIATNIEK +PKRQ KPSKKVLENVKEQKN+RGK
Sbjct: 127 ENKSKMVHDTSNKVKVVQEKAKVKIMEIATNIEKTRPKRQSKPSKKVLENVKEQKNIRGK 186

Query: 185 KNDSPKPTRHSPRIKDLAPSFDLQIS 210
           KNDSPKPTRHSPRIKDLAPSFDLQIS
Sbjct: 187 KNDSPKPTRHSPRIKDLAPSFDLQIS 212

The following BLAST results are available for this feature:
BLAST of IVF0003297 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0003297 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VIA96.6e-6691.50Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DFX66.6e-6691.50Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VDY11.9e-6590.85Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CTS83.3e-6595.17Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TDE01.1e-6394.41Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of IVF0003297 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0065297.17.65e-8490.85hypothetical protein E6C27_scaffold1023G00110 [Cucumis melo var. makuwa][more]
TYK15261.11.08e-8393.92hypothetical protein E5676_scaffold892G00380 [Cucumis melo var. makuwa][more]
KAA0031317.11.04e-8291.50uncharacterized protein E6C27_scaffold139G00700 [Cucumis melo var. makuwa] >KAA0... [more]
TYK22453.11.04e-8291.50uncharacterized protein E5676_scaffold3009G00010 [Cucumis melo var. makuwa][more]
KAA0039507.19.60e-8293.15hypothetical protein E6C27_scaffold64G003290 [Cucumis melo var. makuwa][more]
BLAST of IVF0003297 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 156..200
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 120..137
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 156..212
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..137

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0003297.1IVF0003297.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000724 double-strand break repair via homologous recombination
biological_process GO:0006334 nucleosome assembly
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005634 nucleus
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome