IVF0003256 (gene) Melon (IVF77) v1

Overview


Name	IVF0003256
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Location	chr10: 10671160 .. 10671345 (+)
RNA-Seq Expression	IVF0003256
Synteny	IVF0003256

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGAATGGGAACGAGGAGTTTCCATCCATGTACAGCCAAGGGATTGACATGTTCCAGGAGGATGTACGCGCATCACGATCTTCTCATGCATCAGAGGGTAGGGTCGGATCGAGCAAATCAAAGAGGAAGAGGGAAAGCCAGCGGGAGGGCGAGATTGAAGTCATACATATGGCCCTCGAGTGA

mRNA sequence

ATGCCGAATGGGAACGAGGAGTTTCCATCCATGTACAGCCAAGGGATTGACATGTTCCAGGAGGATGTACGCGCATCACGATCTTCTCATGCATCAGAGGGTAGGGTCGGATCGAGCAAATCAAAGAGGAAGAGGGAAAGCCAGCGGGAGGGCGAGATTGAAGTCATACATATGGCCCTCGAGTGA

Coding sequence (CDS)

ATGCCGAATGGGAACGAGGAGTTTCCATCCATGTACAGCCAAGGGATTGACATGTTCCAGGAGGATGTACGCGCATCACGATCTTCTCATGCATCAGAGGGTAGGGTCGGATCGAGCAAATCAAAGAGGAAGAGGGAAAGCCAGCGGGAGGGCGAGATTGAAGTCATACATATGGCCCTCGAGTGA

Protein sequence

MPNGNEEFPSMYSQGIDMFQEDVRASRSSHASEGRVGSSKSKRKRESQREGEIEVIHMALE

Homology

[Close]

BLAST of IVF0003256 vs. ExPASy TrEMBL
Match: A0A5A7SRG8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G00250 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.6e-23
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1   MPNGNEEFPSMYSQGIDMFQEDVRASRSSHASEGRVGSSKSKRKRESQREGEIEVIHMAL 60
           MPNGNEEFPSMYSQGIDMFQEDVRASRSSHASEGRVGSSKSKRKRESQREGEIEVIHMAL
Sbjct: 101 MPNGNEEFPSMYSQGIDMFQEDVRASRSSHASEGRVGSSKSKRKRESQREGEIEVIHMAL 160

Query: 61  E 62
           E
Sbjct: 161 E 161

[Close]

BLAST of IVF0003256 vs. ExPASy TrEMBL
Match: A0A5A7U4I8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G001180 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.0e-16
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1   MPNGNEEFPSMYSQGIDMFQEDVRASRSSHASEGRVGSSKSKRKRESQREGEIEVIHMAL 60
           M +GNEEFPSMYSQGIDM QEDVRASR SH S+GR+ SS SKRKRESQ++GEIEVIHMA+
Sbjct: 79  MLDGNEEFPSMYSQGIDMSQEDVRASRPSHTSKGRIRSSGSKRKRESQQKGEIEVIHMAI 138

Query: 61  E 62
           E
Sbjct: 139 E 139

[Close]

BLAST of IVF0003256 vs. ExPASy TrEMBL
Match: A0A5D3CUK6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G001070 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-15
Identity = 48/61 (78.69%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 1   MPNGNEEFPSMYSQGIDMFQEDVRASRSSHASEGRVGSSKSKRKRESQREGEIEVIHMAL 60
           MPNGNEEFPSMY+QGIDM Q+DVR SR+S  SEGR  SS+ KRKR SQREG+IEVIHMAL
Sbjct: 239 MPNGNEEFPSMYNQGIDMSQKDVRTSRTSRVSEGRAKSSRLKRKRGSQREGKIEVIHMAL 298

Query: 61  E 62
           E
Sbjct: 299 E 299

[Close]

BLAST of IVF0003256 vs. ExPASy TrEMBL
Match: A0A5A7VKA9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G001980 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-15
Identity = 48/61 (78.69%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 1   MPNGNEEFPSMYSQGIDMFQEDVRASRSSHASEGRVGSSKSKRKRESQREGEIEVIHMAL 60
           MPNGNEEFPSMY+QGIDM Q+DVR SR+S  SEGR  SS+ KRKR SQREG+IEVIHMAL
Sbjct: 243 MPNGNEEFPSMYNQGIDMSQKDVRTSRTSRVSEGRAKSSRLKRKRGSQREGKIEVIHMAL 302

Query: 61  E 62
           E
Sbjct: 303 E 303

[Close]

BLAST of IVF0003256 vs. ExPASy TrEMBL
Match: A0A5A7V026 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00100 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.4e-15
Identity = 50/61 (81.97%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 1   MPNGNEEFPSMYSQGIDMFQEDVRASRSSHASEGRVGSSKSKRKRESQREGEIEVIHMAL 60
           MPN NEEFPS+YSQGID+ QEDVRASRSS  SEGRV SSKSKRKR SQRE EI+VIHM L
Sbjct: 217 MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVL 276

Query: 61  E 62
           E
Sbjct: 277 E 277

[Close]

BLAST of IVF0003256 vs. NCBI nr
Match: KAA0032141.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK14386.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 117 bits (292), Expect = 1.46e-31
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1   MPNGNEEFPSMYSQGIDMFQEDVRASRSSHASEGRVGSSKSKRKRESQREGEIEVIHMAL 60
           MPNGNEEFPSMYSQGIDMFQEDVRASRSSHASEGRVGSSKSKRKRESQREGEIEVIHMAL
Sbjct: 101 MPNGNEEFPSMYSQGIDMFQEDVRASRSSHASEGRVGSSKSKRKRESQREGEIEVIHMAL 160

[Close]

BLAST of IVF0003256 vs. NCBI nr
Match: KAA0050190.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ98219.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 1.38e-21
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1   MPNGNEEFPSMYSQGIDMFQEDVRASRSSHASEGRVGSSKSKRKRESQREGEIEVIHMAL 60
           M +GNEEFPSMYSQGIDM QEDVRASR SH S+GR+ SS SKRKRESQ++GEIEVIHMA+
Sbjct: 79  MLDGNEEFPSMYSQGIDMSQEDVRASRPSHTSKGRIRSSGSKRKRESQQKGEIEVIHMAI 138

[Close]

BLAST of IVF0003256 vs. NCBI nr
Match: TYK15225.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 3.08e-20
Identity = 48/61 (78.69%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 1   MPNGNEEFPSMYSQGIDMFQEDVRASRSSHASEGRVGSSKSKRKRESQREGEIEVIHMAL 60
           MPNGNEEFPSMY+QGIDM Q+DVR SR+S  SEGR  SS+ KRKR SQREG+IEVIHMAL
Sbjct: 239 MPNGNEEFPSMYNQGIDMSQKDVRTSRTSRVSEGRAKSSRLKRKRGSQREGKIEVIHMAL 298

[Close]

BLAST of IVF0003256 vs. NCBI nr
Match: KAA0066185.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 3.24e-20
Identity = 48/61 (78.69%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 1   MPNGNEEFPSMYSQGIDMFQEDVRASRSSHASEGRVGSSKSKRKRESQREGEIEVIHMAL 60
           MPNGNEEFPSMY+QGIDM Q+DVR SR+S  SEGR  SS+ KRKR SQREG+IEVIHMAL
Sbjct: 243 MPNGNEEFPSMYNQGIDMSQKDVRTSRTSRVSEGRAKSSRLKRKRGSQREGKIEVIHMAL 302

[Close]

BLAST of IVF0003256 vs. NCBI nr
Match: KAA0060654.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK02221.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 2.34e-19
Identity = 50/61 (81.97%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 1   MPNGNEEFPSMYSQGIDMFQEDVRASRSSHASEGRVGSSKSKRKRESQREGEIEVIHMAL 60
           MPN NEEFPS+YSQGID+ QEDVRASRSS  SEGRV SSKSKRKR SQRE EI+VIHM L
Sbjct: 217 MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVL 276

The following BLAST results are available for this feature:

BLAST of IVF0003256 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0003256 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SRG8	2.6e-23	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U4I8	4.0e-16	80.33	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CUK6	1.2e-15	78.69	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VKA9	1.2e-15	78.69	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7V026	4.4e-15	81.97	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0003256 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032141.1	1.46e-31	100.00	retrotransposon protein [Cucumis melo var. makuwa] >TYK14386.1 retrotransposon p...	[more]
KAA0050190.1	1.38e-21	80.33	retrotransposon protein [Cucumis melo var. makuwa] >TYJ98219.1 retrotransposon p...	[more]
TYK15225.1	3.08e-20	78.69	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0066185.1	3.24e-20	78.69	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0060654.1	2.34e-19	81.97	retrotransposon protein [Cucumis melo var. makuwa] >TYK02221.1 retrotransposon p...	[more]

BLAST of IVF0003256 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0003256.1	IVF0003256.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding