IVF0003222 (gene) Melon (IVF77) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTGCCCGACGACATCATGGGCACACGACCCAGTCGCTCGAGTGAGGATAGGACTGGTTCAAGTGGGTCAAAGAGGAAGCAAGGAGGCCAAATGGTAGAATCTGTAGAAATAATTCGCAGTGCCATGGAATATGTGAATGGCCAACTAAAGGCCATTGCAGAATGGTCGAATGTACAAAGTTAA ATGTTGCCCGACGACATCATGGGCACACGACCCAGTCGCTCGAGTGAGGATAGGACTGGTTCAAGTGGGTCAAAGAGGAAGCAAGGAGGCCAAATGGTAGAATCTGTAGAAATAATTCGCAGTGCCATGGAATATGTGAATGGCCAACTAAAGGCCATTGCAGAATGGTCGAATGTACAAAGTTAA ATGTTGCCCGACGACATCATGGGCACACGACCCAGTCGCTCGAGTGAGGATAGGACTGGTTCAAGTGGGTCAAAGAGGAAGCAAGGAGGCCAAATGGTAGAATCTGTAGAAATAATTCGCAGTGCCATGGAATATGTGAATGGCCAACTAAAGGCCATTGCAGAATGGTCGAATGTACAAAGTTAA MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEWSNVQS Homology
BLAST of IVF0003222 vs. ExPASy TrEMBL
Match: A0A5A7V3C0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G001020 PE=4 SV=1) HSP 1 Score: 114.4 bits (285), Expect = 1.7e-22 Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 0
BLAST of IVF0003222 vs. ExPASy TrEMBL
Match: A0A5A7V469 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00340 PE=4 SV=1) HSP 1 Score: 89.0 bits (219), Expect = 7.6e-15 Identity = 45/60 (75.00%), Postives = 51/60 (85.00%), Query Frame = 0
BLAST of IVF0003222 vs. ExPASy TrEMBL
Match: A0A5A7T0C2 (RING-H2 finger protein ATL66 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001730 PE=4 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 1.5e-10 Identity = 37/60 (61.67%), Postives = 46/60 (76.67%), Query Frame = 0
BLAST of IVF0003222 vs. ExPASy TrEMBL
Match: A0A5A7UZF5 (RING-H2 finger protein ATL66 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold39G00380 PE=4 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 2.5e-10 Identity = 41/59 (69.49%), Postives = 45/59 (76.27%), Query Frame = 0
BLAST of IVF0003222 vs. ExPASy TrEMBL
Match: A0A5D3CAJ4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G001830 PE=4 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 2.5e-10 Identity = 37/60 (61.67%), Postives = 45/60 (75.00%), Query Frame = 0
BLAST of IVF0003222 vs. NCBI nr
Match: KAA0060365.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22108.1 retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 114 bits (285), Expect = 8.05e-31 Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 0
BLAST of IVF0003222 vs. NCBI nr
Match: KAA0060529.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 89.4 bits (220), Expect = 1.25e-20 Identity = 45/60 (75.00%), Postives = 51/60 (85.00%), Query Frame = 0
BLAST of IVF0003222 vs. NCBI nr
Match: KAA0036810.1 (RING-H2 finger protein ATL66 [Cucumis melo var. makuwa] >TYJ95878.1 RING-H2 finger protein ATL66 [Cucumis melo var. makuwa]) HSP 1 Score: 75.1 bits (183), Expect = 5.67e-16 Identity = 37/60 (61.67%), Postives = 46/60 (76.67%), Query Frame = 0
BLAST of IVF0003222 vs. NCBI nr
Match: KAA0061292.1 (RING-H2 finger protein ATL66 [Cucumis melo var. makuwa] >TYK09869.1 RING-H2 finger protein ATL66 [Cucumis melo var. makuwa]) HSP 1 Score: 73.9 bits (180), Expect = 2.81e-15 Identity = 41/59 (69.49%), Postives = 45/59 (76.27%), Query Frame = 0
BLAST of IVF0003222 vs. NCBI nr
Match: KAA0047716.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 74.3 bits (181), Expect = 3.55e-14 Identity = 37/60 (61.67%), Postives = 45/60 (75.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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