IVF0003222 (gene) Melon (IVF77) v1

Overview
NameIVF0003222
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr06: 15475852 .. 15476037 (+)
RNA-Seq ExpressionIVF0003222
SyntenyIVF0003222
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGCCCGACGACATCATGGGCACACGACCCAGTCGCTCGAGTGAGGATAGGACTGGTTCAAGTGGGTCAAAGAGGAAGCAAGGAGGCCAAATGGTAGAATCTGTAGAAATAATTCGCAGTGCCATGGAATATGTGAATGGCCAACTAAAGGCCATTGCAGAATGGTCGAATGTACAAAGTTAA

mRNA sequence

ATGTTGCCCGACGACATCATGGGCACACGACCCAGTCGCTCGAGTGAGGATAGGACTGGTTCAAGTGGGTCAAAGAGGAAGCAAGGAGGCCAAATGGTAGAATCTGTAGAAATAATTCGCAGTGCCATGGAATATGTGAATGGCCAACTAAAGGCCATTGCAGAATGGTCGAATGTACAAAGTTAA

Coding sequence (CDS)

ATGTTGCCCGACGACATCATGGGCACACGACCCAGTCGCTCGAGTGAGGATAGGACTGGTTCAAGTGGGTCAAAGAGGAAGCAAGGAGGCCAAATGGTAGAATCTGTAGAAATAATTCGCAGTGCCATGGAATATGTGAATGGCCAACTAAAGGCCATTGCAGAATGGTCGAATGTACAAAGTTAA

Protein sequence

MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEWSNVQS
Homology
BLAST of IVF0003222 vs. ExPASy TrEMBL
Match: A0A5A7V3C0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G001020 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.7e-22
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 0

Query: 1   MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEWSNV 60
           MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEWSN+
Sbjct: 48  MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEWSNM 106

BLAST of IVF0003222 vs. ExPASy TrEMBL
Match: A0A5A7V469 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00340 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 7.6e-15
Identity = 45/60 (75.00%), Postives = 51/60 (85.00%), Query Frame = 0

Query: 1   MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEWSNVQ 60
           ML DDIMGTRP RS+E RTGSSGSKRKQGGQ VE++EIIR+ ME+ N +LKAI EW NVQ
Sbjct: 42  MLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWLNVQ 101

BLAST of IVF0003222 vs. ExPASy TrEMBL
Match: A0A5A7T0C2 (RING-H2 finger protein ATL66 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001730 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.5e-10
Identity = 37/60 (61.67%), Postives = 46/60 (76.67%), Query Frame = 0

Query: 1  MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEWSNVQ 60
          M P++IMGT+P  SSE +T S+G KRK+GGQ +E  EIIR+A EY N QLK IAEW NV+
Sbjct: 1  MSPNNIMGTQPGCSSEGKTSSNGLKRKRGGQAIEMAEIIRNAREYANDQLKTIAEWPNVR 60

BLAST of IVF0003222 vs. ExPASy TrEMBL
Match: A0A5A7UZF5 (RING-H2 finger protein ATL66 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold39G00380 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.5e-10
Identity = 41/59 (69.49%), Postives = 45/59 (76.27%), Query Frame = 0

Query: 1   MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEWSNV 60
           M PDD MGT   RSSE R GS GSKRKQG Q VE+V+II +AMEY N QLK IAEWSN+
Sbjct: 43  MSPDDTMGTH-GRSSEGRNGSIGSKRKQGDQTVETVKIICNAMEYANDQLKDIAEWSNL 100

BLAST of IVF0003222 vs. ExPASy TrEMBL
Match: A0A5D3CAJ4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G001830 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.5e-10
Identity = 37/60 (61.67%), Postives = 45/60 (75.00%), Query Frame = 0

Query: 1   MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEWSNVQ 60
           M  DDIMGT+P R+S+ R  S+GSKRKQG Q VE+ +IIRSAMEY N  L  IA+WS +Q
Sbjct: 206 MSSDDIMGTQPERASDGRNASNGSKRKQGSQPVETTKIIRSAMEYANNHLNHIADWSIIQ 265

BLAST of IVF0003222 vs. NCBI nr
Match: KAA0060365.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22108.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (285), Expect = 8.05e-31
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 0

Query: 1   MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEWSNV 59
           MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEWSN+
Sbjct: 48  MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEWSNM 106

BLAST of IVF0003222 vs. NCBI nr
Match: KAA0060529.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 1.25e-20
Identity = 45/60 (75.00%), Postives = 51/60 (85.00%), Query Frame = 0

Query: 1   MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEWSNVQ 60
           ML DDIMGTRP RS+E RTGSSGSKRKQGGQ VE++EIIR+ ME+ N +LKAI EW NVQ
Sbjct: 42  MLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWLNVQ 101

BLAST of IVF0003222 vs. NCBI nr
Match: KAA0036810.1 (RING-H2 finger protein ATL66 [Cucumis melo var. makuwa] >TYJ95878.1 RING-H2 finger protein ATL66 [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 5.67e-16
Identity = 37/60 (61.67%), Postives = 46/60 (76.67%), Query Frame = 0

Query: 1  MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEWSNVQ 60
          M P++IMGT+P  SSE +T S+G KRK+GGQ +E  EIIR+A EY N QLK IAEW NV+
Sbjct: 1  MSPNNIMGTQPGCSSEGKTSSNGLKRKRGGQAIEMAEIIRNAREYANDQLKTIAEWPNVR 60

BLAST of IVF0003222 vs. NCBI nr
Match: KAA0061292.1 (RING-H2 finger protein ATL66 [Cucumis melo var. makuwa] >TYK09869.1 RING-H2 finger protein ATL66 [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 2.81e-15
Identity = 41/59 (69.49%), Postives = 45/59 (76.27%), Query Frame = 0

Query: 1   MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEWSNV 59
           M PDD MGT   RSSE R GS GSKRKQG Q VE+V+II +AMEY N QLK IAEWSN+
Sbjct: 43  MSPDDTMGTH-GRSSEGRNGSIGSKRKQGDQTVETVKIICNAMEYANDQLKDIAEWSNL 100

BLAST of IVF0003222 vs. NCBI nr
Match: KAA0047716.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 3.55e-14
Identity = 37/60 (61.67%), Postives = 45/60 (75.00%), Query Frame = 0

Query: 1   MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEWSNVQ 60
           M  DDIMGT+P R+S+ R  S+GSKRKQG Q VE+ +IIRSAMEY N  L  IA+WS +Q
Sbjct: 159 MSSDDIMGTQPERASDGRNASNGSKRKQGSQPVETTKIIRSAMEYANNHLNHIADWSIIQ 218

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V3C01.7e-2298.31Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V4697.6e-1575.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7T0C21.5e-1061.67RING-H2 finger protein ATL66 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A5A7UZF52.5e-1069.49RING-H2 finger protein ATL66 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A5D3CAJ42.5e-1061.67Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0060365.18.05e-3198.31retrotransposon protein [Cucumis melo var. makuwa] >TYK22108.1 retrotransposon p... [more]
KAA0060529.11.25e-2075.00retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon p... [more]
KAA0036810.15.67e-1661.67RING-H2 finger protein ATL66 [Cucumis melo var. makuwa] >TYJ95878.1 RING-H2 fing... [more]
KAA0061292.12.81e-1569.49RING-H2 finger protein ATL66 [Cucumis melo var. makuwa] >TYK09869.1 RING-H2 fing... [more]
KAA0047716.13.55e-1461.67retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..33
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 13..29

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0003222.1IVF0003222.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane