IVF0003186 (gene) Melon (IVF77) v1

Overview
NameIVF0003186
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Locationchr02: 18153106 .. 18156793 (+)
RNA-Seq ExpressionIVF0003186
SyntenyIVF0003186
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCGATGCTTCCAACGAGTGTGAACGGTCGTTCAGTGTTAGAAACCATTGGAAATGCACTTGTAGCAAGGGAAACGGGCTAAGCCTGAGGACTTTTGGTGTTTTTCCCAAGAAAACACAAGCGAGAATGCTCCGGACTCAGCTTTCTCGTCCTGTGGTAAAAAACGATCCCTCGACGATTTCATCCCTTTGTTTTGTATTGGTCATAAGTCTTTCAATCTTTGGGGCTCATACTTTGAGGACTTTTTCCCACACTCCTGGCATGCTCCCTTACTCGTTTTCCCAAGCTATACGTCGGGAAGCGAGCTCATTGGAGGCAGAACTAAGGTGCAACAAAAAACTGTCCAAATGATGGCCAATGCTTCCAACGAGTGGCAAACACTCGTCTGGTGTCAGAAACCACTAGAAATGCACTTGCATCGAAAGAAATGTTCTGAGTTCAAGGAATTCCAGTGTCCAAACAAAGAAAACACGAGCGAGAATGCCCTGGACACAGTTTTCTTGTCCTGAGGTAAAAAGCGTCTTCGACGATTTCTTCCCTTTGCTTCGTATTGGTCATAAGTCTTTCGATCTTCTCGGCTCTTATTCCAAGGACTTTAATCCATACTCCTGGCATGCTCCCCGACATATTTTCCCAAAGTATAGGTGGGAAGCGAGCTTGTTGGAGGGAGAACTAAGGTGTGACCCAAAACGGTCAAAAAGATGACCAATGCTTCCAACGAGTGGCGAACGCTCGCCTGGTGTCAGAAACCACAGAAATGCACTTGCAGTGAAGGAAACAGGCTGAGCTTGAGCACGTCCGGTCTGCGTCCTAAGAAAAGGCACGCGAGAATGCCCATGGCTCAGTTTTCTCATCCTGGGGTAAAAAGCGGTCTCCCGACGAATTCTTCCCTTTGGTTCGTATTGGTCATAAGTCTTTTGATCTTTGGGGATCGTACTCCGAGGACTTCAACCCATACTCCCAGCATGCTCCCTAACACATTTTTCCAAGGTATAGGTCAGGAAGCGAGCTCGTTGGAGGGAGAACTATGGTGCGACCCAAAACAGTCCAAAAGATGACCAATGCTTCAAACGAGTGGCGAACGATCGTCCAGTGTCAGAAACCATTAGAAATGCACTTGCAGCAAGGGAAACGGGCTGAGCTTGAGGACTTTTGGTGTTTGTCCCAAGAAAACGCGAGTGAGAATGCTCCGGACTCAACTTTCTCGTCCTGGGGTAAAAAGCGGTCCCTCGATGGTTTCGTCCGTTTGTTTCGTATTGGTCATAAGTCTTTCGATCTTCGAGGCTCATAGTTCGAGGACTTCATCCCACACTCCTAGCATACTCCCTTACACGTTTTCCAAAGCTATACGTTGGGAAGCAAGCTCGTTGGAGGCAGAACTAAGGTGCGACCTAAAACTGTCCAAAAGATGGCCAATGCTTCCAACGAGTGGCAAACGCTCGTCCGGTGTCAGAAACCACTAGAAATGAACTTGCATGGAAGGAAATGTTCTGAGTTTGAGGACTTCCAGTGTCCGAACCAAGAAAACGCGAGCGAGAATGCCACGGACAAAGTTTTCTTGTCCTGGGGTAAAAAGCGGTCTTCGACGGTTTCTTCCCTTTGCTTCGTATTGGTCATAAGTCTTTCAATCTTCTCGACTTGTATTCCAAGGACTTCAATCCATACTCCTGGCATGCTCCTGACATGTTTTCCGAAGGTATAGGTTGGGAAGCGAGCTCGTTGGTGGGAGAACTAAAGTGCGACCCAAACAGTCAAAGGATGCTCAATGCTTGCAACGAGTGGCGAGCACTCGTCCGGTGTCAGAAACCACAGGAAATGCACTTGTAGTGAAGGAAAAATACTGAGCTCGAGGATGTCTGGTGTGCGTCCTAAGAAAACGCGCGCGAGAATGCCACTGACTGAATTTTCTCGTCCTGGGTAAAAAGCGATCCCCAAACGAATTCAAAAAGCGATCCCCAAACGAATTCTTCCGCTTGCTTCGTAATGGTTATAAGTCTTCCGATCTTCGGGGCTCGTACTCCGAGGACTTCAACCCATACTCCTAGCATGCTCCCTACCACGTTTCCCAAGGTATAAGTCAGGAAGCGAGCTCATTGCAGGGAGAACTATGGTGCGACCCAAAACGGTCCAAAAGATTGACAATGCTTGCAACGAGTGGAGAAGGCTCGTCCGATGTCAGAAACCACTGGAAATGCATTTGCAGCGCAGGAAACGGGCTGAGCTCGGGGACTTCTGGTGTTCTTCCCAAGAAAACGCTTGTTGGAATGCCCCGGACGCAGTTTTCTCGTCCTGGGGTAAAAGGCGGTCCCCCGACGGTTTCTTCCCTTTGCTTCGTATTGGTCATAAGTCTATCGATCTTTGGGGCTTGCACTCCGAGGACTTCATTCCATACTCCTAGTGTGCTCCCTGACACATTTTCCCAAGGTATAGGTTGGGAAGTGAGCTCGTTGGTGGGAGAGATAAGGCACGACCCAAAACGGTTCAAAAGATGGCCAATGTTTCCAATGAATGGTAAACGCTCGTCCAGTGTCAAAACCACAGGAAATGCAGTTCCAGCGAAGGAAATAGGCTGAGCTCGAGGACCTCCGATGTGCGTCCCAAGAAAACAAAAGCGCGAATGCCCCGGACTCAGTTTTCTCGTCCTAGAGTAAAAGGCAGTCTCCCGACGATTTCTTCCCTTTGCTTCGTATTTGTCATAAGTCTTCCAATCTTCGGGACTCATACTCCAAGAACTTCAACCCACACTCTTGGCATGCTCCCTCACACGTTTTCCCAAGGTATAGGTCGGGAAGCGAGCTTGTTGGAGGGAGAACTAATGTGCGACCCAAAACGGTCCAAAAGATGGTCAATGCTTCCAACGAGTGGCGAACACTCGTTGGGTGTTAGAAACCACTCGAACTGCACTTGTAGGGAAGGAAACGGGCTGAGCACGAGGACTTACACTGTTCGTCTCAAGAAAACGCAAGCGAGAAGTCCTCGGACTCAGTTTTCTCGTCCTGGGGTAAAAGACGGTCTCCCGACGGTTTCTTCCCTTTGCTTCGTATTTGACATAAGTCTTTCGATCTTCACAGCTCGTACTCCGAGGACTTCAAACCTCTCTTCTGGCATGCTCCCTAACATGTTTTTCCAAGGTATAGGTCTGGAAGCGAGCTCGTTGGAGGGAGAACTAAGGTACGACCCAAAACTATCCAAAAGATGGCCATTCTTCCAACGAGTGGCAAACGCTCGTTCAGTGTCAGAAACCACTAGAAATGCACTTGTAGTGAAGGAAATGGGCGAAGGACGAGGACCTATGGTGTTCGTCTTAGAAAACACGAGCGAGTACTCCTTGGACTCAGTTTTCTCGTCGTGGGGTAAAAAGCGGTCCTCGACGGTTTCTTCCCTTTGCTTCGTATTGGTCATAAGTCTTTCGATCTTCAGAGCACGTACTGCAAGAACACCAACCCACACTCCTAGCATACTCCCCGGTACGTTTTACCATGGTATAGATCGTGAGACGAGCTTGTCGAAAGGAGAATTAAGGTGTGACCCAAAACGGTCCAAAAGATGGCGAATGCTTCCAACGAGTGGCGAACGCTCCTCTGGTGTCAGAAACAACTGGAAATGCACTTACAGCGAAGGAAACAGGCTGTGCTTGAGGACTTCCAGTGTTTGTCCCAAGAAAACTCGAGTGAGAATGCCCTAG

mRNA sequence

ATGACCGATGCTTCCAACGAGTGTGAACGGTCGTTCAGTGTTAGAAACCATTGGAAATGCACTTGTAGCAAGGGAAACGGGCTAAGCCTGAGGACTTTTGGTGTTTTTCCCAAGAAAACACAAGCGAGAATGCTCCGGACTCAGCTTTCTCGTCCTGTGGTAAAAAACGATCCCTCGACGATTTCATCCCTTTGTTTTGTATTGGTCATAAGTCTTTCAATCTTTGGGGCTCATACTTTGAGGACTTTTTCCCACACTCCTGGCATGCTCCCTTACTCGTTTTCCCAAGCTATACGTCGGGAAGCGAGCTCATTGGAGGCAGAACTAAGGGAAGGAAACGGGCTGAGCACGAGGACTTACACTGTTCGTCTCAAGAAAACGCAAGCGAGAAGTCCTCGGACTCAGTTTTCTCGTCCTGGGGTAAAAGACGGTCTCCCGACGGTTTCTTCCCTTTGCTTCGTATTTGACATAAGTCTTTCGATCTTCACAGCTCGTACTCCGAGGACTTCAAACCTCTCTTCTGGCATGCTCCCTAACATGTTTTTCCAAGGTATAGGTCTGGAAGCGAGCTCGTTGGAGGGAGAACTAAGAGCACGTACTGCAAGAACACCAACCCACACTCCTAGCATACTCCCCGGTACGTTTTACCATGGTATAGATCGTGAGACGAGCTTGTCGAAAGGAGAATTAAGGTGTGACCCAAAACGGTCCAAAAGATGGCGAATGCTTCCAACGAGTGGCGAACGCTCCTCTGGTGTCAGAAACAACTGGAAATGCACTTACAGCGAAGGAAACAGGCTGTGCTTGAGGACTTCCAGTGTTTGTCCCAAGAAAACTCGAGTGAGAATGCCCTAG

Coding sequence (CDS)

ATGACCGATGCTTCCAACGAGTGTGAACGGTCGTTCAGTGTTAGAAACCATTGGAAATGCACTTGTAGCAAGGGAAACGGGCTAAGCCTGAGGACTTTTGGTGTTTTTCCCAAGAAAACACAAGCGAGAATGCTCCGGACTCAGCTTTCTCGTCCTGTGGTAAAAAACGATCCCTCGACGATTTCATCCCTTTGTTTTGTATTGGTCATAAGTCTTTCAATCTTTGGGGCTCATACTTTGAGGACTTTTTCCCACACTCCTGGCATGCTCCCTTACTCGTTTTCCCAAGCTATACGTCGGGAAGCGAGCTCATTGGAGGCAGAACTAAGGGAAGGAAACGGGCTGAGCACGAGGACTTACACTGTTCGTCTCAAGAAAACGCAAGCGAGAAGTCCTCGGACTCAGTTTTCTCGTCCTGGGGTAAAAGACGGTCTCCCGACGGTTTCTTCCCTTTGCTTCGTATTTGACATAAGTCTTTCGATCTTCACAGCTCGTACTCCGAGGACTTCAAACCTCTCTTCTGGCATGCTCCCTAACATGTTTTTCCAAGGTATAGGTCTGGAAGCGAGCTCGTTGGAGGGAGAACTAAGAGCACGTACTGCAAGAACACCAACCCACACTCCTAGCATACTCCCCGGTACGTTTTACCATGGTATAGATCGTGAGACGAGCTTGTCGAAAGGAGAATTAAGGTGTGACCCAAAACGGTCCAAAAGATGGCGAATGCTTCCAACGAGTGGCGAACGCTCCTCTGGTGTCAGAAACAACTGGAAATGCACTTACAGCGAAGGAAACAGGCTGTGCTTGAGGACTTCCAGTGTTTGTCCCAAGAAAACTCGAGTGAGAATGCCCTAG

Protein sequence

MTDASNECERSFSVRNHWKCTCSKGNGLSLRTFGVFPKKTQARMLRTQLSRPVVKNDPSTISSLCFVLVISLSIFGAHTLRTFSHTPGMLPYSFSQAIRREASSLEAELREGNGLSTRTYTVRLKKTQARSPRTQFSRPGVKDGLPTVSSLCFVFDISLSIFTARTPRTSNLSSGMLPNMFFQGIGLEASSLEGELRARTARTPTHTPSILPGTFYHGIDRETSLSKGELRCDPKRSKRWRMLPTSGERSSGVRNNWKCTYSEGNRLCLRTSSVCPKKTRVRMP
Homology
[Close]
BLAST of IVF0003186 vs. ExPASy TrEMBL
Match: A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 1.9e-60
Identity = 152/278 (54.68%), Postives = 174/278 (62.59%), Query Frame = 0 

Query: 23   SKGNGLSLRTFGVFPKKTQARMLRTQLSRPVVKNDPSTISSLCFVLVISLSIFGAHTLRT 82
            +K NGL+  T    PKKT+ARM RTQ  RP  K  P TISSLC VLVISL IF A TLRT
Sbjct: 1263 AKQNGLTSMTSRARPKKTRARMPRTQFFRPGEKCGPPTISSLCSVLVISLPIFRARTLRT 1322

Query: 83   FSHTPGMLPYSFSQAIRREASSLEAELREGNGLSTRTYTVRLKKTQARSPRTQFSRPGVK 142
             +HTPGM+  +F   I  EAS LE EL E NGLS++  + R  KT+AR PRTQFSRPG K
Sbjct: 1323 STHTPGMVSDTFFGGIGWEASWLEGELCEVNGLSSKISSARPMKTRARMPRTQFSRPGAK 1382

Query: 143  DGLPTVSSLCFVFDISLSIFTARTPRTSNLSSGMLPNMF---FQGIGLEASSLEGELRAR 202
             G PTVSSLC V  ISLSIF ART RTS  +SGMLP+ F     G  L+ S    EL+  
Sbjct: 1383 SGPPTVSSLCSVLVISLSIFGARTLRTSTHTSGMLPDTFSGETTGNALQRSK-RPELKDF 1442

Query: 203  TARTPTHTPSILPGT-------------FYHGIDRETSLSKGELRCDPKRSKRWRMLPTS 262
               +  +   I P +             F+  + RE S  + EL CD KRSKRW M PT+
Sbjct: 1443 RCSSQENANEIAPDSIFSSLSKKRSPDVFFSLLRREASSLEEELWCDLKRSKRWPMFPTN 1502

Query: 263  GERSSGVRNNWKCTYSEGNRLCLRTSSVCPKKTRVRMP 285
            GERSSGVRN+WKCT SEGN L  RTS   PKKTR RMP
Sbjct: 1503 GERSSGVRNHWKCTCSEGNGLNSRTSGASPKKTRARMP 1539

[Close]
BLAST of IVF0003186 vs. ExPASy TrEMBL
Match: A0A5D3DIF8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G00100 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 4.4e-49
Identity = 149/353 (42.21%), Postives = 168/353 (47.59%), Query Frame = 0 

Query: 9   ERSFSVRNHWKCTCSKGNGLSLRTFGVFPKKTQARMLRTQLSRPVV-------------- 68
           ERS+ VRNHWK TC++ N LS RTF V  K TQAR  RT    P +              
Sbjct: 335 ERSYGVRNHWKSTCNERNRLSSRTFDVRHKITQARTPRTSTHTPGMLPNTFSQGIGREAS 394

Query: 69  --------------------------------KNDPSTISSLCFVLVISLSIFGAHTLRT 128
                                           K    T+SSL F+LVISL IFGAHT RT
Sbjct: 395 LLEGELSKRNRLSSRNSGVRPKKMDSVFSSWSKTWSQTVSSLYFLLVISLLIFGAHTPRT 454

Query: 129 FSHTPGMLPYSFSQAIRREASSLEAELR-------------------------------E 188
            +HT  MLP  FSQ I REASSLE ELR                               E
Sbjct: 455 STHTLDMLPDMFSQGIGREASSLEGELRCDPKWYKRWPMLQTSGELSSGVRNNWKRTCSE 514

Query: 189 GNGLSTRTYTVRLKKTQARSPRTQFSRPGVKDGLPTVSSLCFVFDISLSIFTARTPRTSN 248
            N L +RT  V  KKT AR P+TQF R                            PRT  
Sbjct: 515 RNRLGSRTSNVCPKKTLARMPQTQFPR----------------------------PRTLT 574

Query: 249 LSSGMLPNMFFQGIGLEASSLEGELRARTARTPTHTPSILPGTFYHGIDRETSLSKGELR 285
            + GMLP+ F QGIG EASSLEGEL+    R  ++   +LP +  H   R+ S  +GELR
Sbjct: 575 HTPGMLPDTFSQGIGREASSLEGELKCNRKR--SNRWPMLPTSGEHSSGRKASSLEGELR 634

[Close]
BLAST of IVF0003186 vs. ExPASy TrEMBL
Match: A0A5D3DFP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00220 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 4.1e-47
Identity = 127/273 (46.52%), Postives = 145/273 (53.11%), Query Frame = 0 

Query: 9   ERSFSVRNHWKCTCSKGNGLSLRTFGVFPKKTQARMLRTQLSRPVVKNDPSTISSLCFVL 68
           ERS  VRN WKCTC +GNGLS RT G  PKKT+ARM +TQ SRP  K+DP T+S+LC VL
Sbjct: 263 ERSSGVRNQWKCTCIEGNGLSSRTSGARPKKTRARMPQTQFSRPGPKSDPPTVSTLCSVL 322

Query: 69  VISLSIFGAHTLRTFSHTPGMLPYSFSQAIRREASSLEAELREGNGLSTRTYTVRLKKTQ 128
           V SLSIFGA T RT +HTPGMLP +FS+   RE                           
Sbjct: 323 VRSLSIFGAPTPRTSTHTPGMLPDTFSE---REC-------------------------- 382

Query: 129 ARSPRTQFSRPGVKDGLPTVSSLCFVFDISLSIFTARTPRTSNLSSGML--PNMFFQGIG 188
                                                 PR S L  G L  P+ FF  + 
Sbjct: 383 --------------------------------------PRLSFLVLGKLWSPDGFFPLLR 442

Query: 189 LEASSLEGELRARTARTPTHTPSILPGTFYHGIDRETSLSKGELRCDPKRSKRWRMLPTS 248
           +   S+  +LR  T RT THT  +LP TF  GI RE S  +GEL CDPK SKRW MLPT 
Sbjct: 443 IGHKSV--DLRGSTPRTSTHTSGMLPDTFSGGIGREASSLEGELLCDPKPSKRWPMLPTG 466

Query: 249 GERSSGVRNNWKCTYSEGNRLCLRTSSVCPKKT 280
           GERSSG RN+WKCT SEGN L  RTS   P+KT
Sbjct: 503 GERSSGFRNHWKCTCSEGNGLSSRTSGARPEKT 466

[Close]
BLAST of IVF0003186 vs. ExPASy TrEMBL
Match: A0A5D3BG85 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1625G00140 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 7.3e-28
Identity = 109/296 (36.82%), Postives = 138/296 (46.62%), Query Frame = 0 

Query: 23  SKGNGLSLRTFGVFPKKTQARMLRTQLSRPVVKNDPSTISSLCFVLVISLSIFGAHTLRT 82
           SKGNGLS RT  V P+K + RM RTQ+  P V++  +           +LS+   H    
Sbjct: 269 SKGNGLSSRTSSVLPRKVRTRMPRTQIFHPGVRDSYTE----------NLSLDSPH---- 328

Query: 83  FSHTPGMLPYSFSQAIRREASSLEAELREGNGLSTRTYTVRLKKTQARSPRTQFSRPGVK 142
               P +  Y     +  E +       EGNGLS+RT  VR +K +AR PRT F    VK
Sbjct: 329 -RPLPVLPRYRSKNKLVGERTK---HFSEGNGLSSRTSGVRSRKVRARMPRTLFFHHRVK 388

Query: 143 DGLPTVSSLCFVFDISLSIFTARTPRTSNLSSGMLPNMFFQGIGLEASSLEGELRART-- 202
               TVS  C VF IS S F    PRTS    G++P+ F QGIG E SSLEGEL A +  
Sbjct: 389 SVPTTVSLFCVVFVISASSFVTCAPRTSVYVPGIVPHPFSQGIGWEVSSLEGELSAWSFK 448

Query: 203 ---ARTPTHTPSILPGTFYHGIDRETSLSKGEL------------------RCDPKRSKR 262
               +T  + P I+P  F  GI RE S  +GEL                  R    R++ 
Sbjct: 449 TCAPKTSIYVPGIVPHPFSQGIGREASSLEGELSKGNGLSSRASSVRPRKVRARMPRTQF 508

Query: 263 WRMLPTSGERSSGV-----------RNNWKCTYSEGNRLCLRTSSVCPKKTRVRMP 285
           +     SG  S  +           +   K  +SEGNRL  RTS V P+K R RMP
Sbjct: 509 FHRRIKSGPASVSLFSILLVITRFPKKPLKMLFSEGNRLSSRTSGVRPRKERARMP 546

[Close]
BLAST of IVF0003186 vs. ExPASy TrEMBL
Match: A0A5A7VGQ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00090 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 4.8e-27
Identity = 108/296 (36.49%), Postives = 137/296 (46.28%), Query Frame = 0 

Query: 23  SKGNGLSLRTFGVFPKKTQARMLRTQLSRPVVKNDPSTISSLCFVLVISLSIFGAHTLRT 82
           SKGNGLS RT  V P+K + RM RTQ+  P V++  +           +LS+   H    
Sbjct: 683 SKGNGLSSRTSSVLPRKVRTRMPRTQIFHPGVRDSYTE----------NLSLDSPH---- 742

Query: 83  FSHTPGMLPYSFSQAIRREASSLEAELREGNGLSTRTYTVRLKKTQARSPRTQFSRPGVK 142
               P +  Y     +  E +       EGNGLS+RT  VR +K +AR PRT F    VK
Sbjct: 743 -RPLPVLPRYRSKNKLVGERTK---HFSEGNGLSSRTSGVRSRKVRARMPRTLFFHRRVK 802

Query: 143 DGLPTVSSLCFVFDISLSIFTARTPRTSNLSSGMLPNMFFQGIGLEASSLEGELRART-- 202
               TVS  C VF IS S F    PRTS    G++P+ F QGIG E SSLEGEL A +  
Sbjct: 803 SVPTTVSLFCVVFVISASSFGTCAPRTSVYVPGIVPHPFSQGIGWEVSSLEGELSAWSFK 862

Query: 203 ---ARTPTHTPSILPGTFYHGIDRETSLSKGEL------------------RCDPKRSKR 262
               +T  + P I+P  F  GI RE    +GEL                  R    R++ 
Sbjct: 863 TCAPKTSIYVPGIVPHPFSQGIGREARSLEGELSKGNGLSSRASSVRPRKVRARMHRTQF 922

Query: 263 WRMLPTSGERSSGV-----------RNNWKCTYSEGNRLCLRTSSVCPKKTRVRMP 285
           +     SG  S  +           +   K  +SEGNRL  RTS V P+K R RMP
Sbjct: 923 FHRRIKSGPASVSLFSILLVITRFPKKPLKMLFSEGNRLSSRTSGVRPRKERARMP 960

[Close]
BLAST of IVF0003186 vs. NCBI nr
Match: KAA0062888.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa] >TYK22520.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 244 bits (623), Expect = 2.23e-69
Identity = 151/278 (54.32%), Postives = 173/278 (62.23%), Query Frame = 0 

Query: 23   SKGNGLSLRTFGVFPKKTQARMLRTQLSRPVVKNDPSTISSLCFVLVISLSIFGAHTLRT 82
            +K NGL+  T    PKKT+ARM RTQ  RP  K  P TISSLC VLVISL IF A TLRT
Sbjct: 1263 AKQNGLTSMTSRARPKKTRARMPRTQFFRPGEKCGPPTISSLCSVLVISLPIFRARTLRT 1322

Query: 83   FSHTPGMLPYSFSQAIRREASSLEAELREGNGLSTRTYTVRLKKTQARSPRTQFSRPGVK 142
             +HTPGM+  +F   I  EAS LE EL E NGLS++  + R  KT+AR PRTQFSRPG K
Sbjct: 1323 STHTPGMVSDTFFGGIGWEASWLEGELCEVNGLSSKISSARPMKTRARMPRTQFSRPGAK 1382

Query: 143  DGLPTVSSLCFVFDISLSIFTARTPRTSNLSSGMLPNMFF---QGIGLEASSLEGELRAR 202
             G PTVSSLC V  ISLSIF ART RTS  +SGMLP+ F     G  L+ S    EL+  
Sbjct: 1383 SGPPTVSSLCSVLVISLSIFGARTLRTSTHTSGMLPDTFSGETTGNALQRSK-RPELKDF 1442

Query: 203  TARTPTHTPSILPGTFYHGID-------------RETSLSKGELRCDPKRSKRWRMLPTS 262
               +  +   I P + +  +              RE S  + EL CD KRSKRW M PT+
Sbjct: 1443 RCSSQENANEIAPDSIFSSLSKKRSPDVFFSLLRREASSLEEELWCDLKRSKRWPMFPTN 1502

Query: 263  GERSSGVRNNWKCTYSEGNRLCLRTSSVCPKKTRVRMP 284
            GERSSGVRN+WKCT SEGN L  RTS   PKKTR RMP
Sbjct: 1503 GERSSGVRNHWKCTCSEGNGLNSRTSGASPKKTRARMP 1539

[Close]
BLAST of IVF0003186 vs. NCBI nr
Match: TYK23424.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 207 bits (526), Expect = 2.37e-57
Identity = 152/356 (42.70%), Postives = 169/356 (47.47%), Query Frame = 0 

Query: 9   ERSFSVRNHWKCTCSKGNGLSLRTFGVFPKKTQARMLRTQLSRPVV-------------- 68
           ERS+ VRNHWK TC++ N LS RTF V  K TQAR  RT    P +              
Sbjct: 335 ERSYGVRNHWKSTCNERNRLSSRTFDVRHKITQARTPRTSTHTPGMLPNTFSQGIGREAS 394

Query: 69  --------------------------------KNDPSTISSLCFVLVISLSIFGAHTLRT 128
                                           K    T+SSL F+LVISL IFGAHT RT
Sbjct: 395 LLEGELSKRNRLSSRNSGVRPKKMDSVFSSWSKTWSQTVSSLYFLLVISLLIFGAHTPRT 454

Query: 129 FSHTPGMLPYSFSQAIRREASSLEAELR-------------------------------E 188
            +HT  MLP  FSQ I REASSLE ELR                               E
Sbjct: 455 STHTLDMLPDMFSQGIGREASSLEGELRCDPKWYKRWPMLQTSGELSSGVRNNWKRTCSE 514

Query: 189 GNGLSTRTYTVRLKKTQARSPRTQFSRPGVKDGLPTVSSLCFVFDISLSIFTARTPRTSN 248
            N L +RT  V  KKT AR P+TQF RP                            RT  
Sbjct: 515 RNRLGSRTSNVCPKKTLARMPQTQFPRP----------------------------RTLT 574

Query: 249 LSSGMLPNMFFQGIGLEASSLEGEL---RARTARTPTHTPSILPGTFYHGIDRETSLSKG 284
            + GMLP+ F QGIG EASSLEGEL   R R+ R P     +LP +  H   R+ S  +G
Sbjct: 575 HTPGMLPDTFSQGIGREASSLEGELKCNRKRSNRWP-----MLPTSGEHSSGRKASSLEG 634

[Close]
BLAST of IVF0003186 vs. NCBI nr
Match: TYK22521.1 (uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 200 bits (508), Expect = 1.45e-55
Identity = 127/273 (46.52%), Postives = 145/273 (53.11%), Query Frame = 0 

Query: 9   ERSFSVRNHWKCTCSKGNGLSLRTFGVFPKKTQARMLRTQLSRPVVKNDPSTISSLCFVL 68
           ERS  VRN WKCTC +GNGLS RT G  PKKT+ARM +TQ SRP  K+DP T+S+LC VL
Sbjct: 263 ERSSGVRNQWKCTCIEGNGLSSRTSGARPKKTRARMPQTQFSRPGPKSDPPTVSTLCSVL 322

Query: 69  VISLSIFGAHTLRTFSHTPGMLPYSFSQAIRREASSLEAELREGNGLSTRTYTVRLKKTQ 128
           V SLSIFGA T RT +HTPGMLP +FS+   RE                           
Sbjct: 323 VRSLSIFGAPTPRTSTHTPGMLPDTFSE---REC-------------------------- 382

Query: 129 ARSPRTQFSRPGVKDGLPTVSSLCFVFDISLSIFTARTPRTSNLSSGML--PNMFFQGIG 188
                                                 PR S L  G L  P+ FF  + 
Sbjct: 383 --------------------------------------PRLSFLVLGKLWSPDGFFPLLR 442

Query: 189 LEASSLEGELRARTARTPTHTPSILPGTFYHGIDRETSLSKGELRCDPKRSKRWRMLPTS 248
           +   S++  LR  T RT THT  +LP TF  GI RE S  +GEL CDPK SKRW MLPT 
Sbjct: 443 IGHKSVD--LRGSTPRTSTHTSGMLPDTFSGGIGREASSLEGELLCDPKPSKRWPMLPTG 466

Query: 249 GERSSGVRNNWKCTYSEGNRLCLRTSSVCPKKT 279
           GERSSG RN+WKCT SEGN L  RTS   P+KT
Sbjct: 503 GERSSGFRNHWKCTCSEGNGLSSRTSGARPEKT 466

[Close]
BLAST of IVF0003186 vs. NCBI nr
Match: KAA0037172.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK13901.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 130 bits (327), Expect = 1.57e-32
Identity = 65/88 (73.86%), Postives = 71/88 (80.68%), Query Frame = 0 

Query: 9  ERSFSVRNHWKCTCSKGNGLSLRTFGVFPKKTQARMLRTQLSRPVVKNDPSTISSLCFVL 68
          ER F VRNHWKC CS+GNGLS RT G  PKKT+ARM  TQ SRP VK+DP T+SSLCFVL
Sbjct: 7  ERLFDVRNHWKCACSEGNGLSSRTSGARPKKTRARMPLTQFSRPGVKSDPPTVSSLCFVL 66

Query: 69 VISLSIFGAHTLRTFSHTPGMLPYSFSQ 96
           ISLSIF A TLRT +HTPGMLP +FSQ
Sbjct: 67 AISLSIFEACTLRTSTHTPGMLPDTFSQ 94

[Close]
BLAST of IVF0003186 vs. NCBI nr
Match: TYJ98800.1 (uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 136 bits (342), Expect = 3.98e-32
Identity = 113/296 (38.18%), Postives = 140/296 (47.30%), Query Frame = 0 

Query: 23  SKGNGLSLRTFGVFPKKTQARMLRTQLSRPVVKNDPSTISSLCFVLVISLSIFGAHTLRT 82
           SKGNGLS RT  V P+K + RM RTQ+  P V++  +           +LS+   H    
Sbjct: 269 SKGNGLSSRTSSVLPRKVRTRMPRTQIFHPGVRDSYTE----------NLSLDSPHR--- 328

Query: 83  FSHTPGMLPYSFSQAIRREASSLEAELREGNGLSTRTYTVRLKKTQARSPRTQFSRPGVK 142
               P +  Y     +  E +       EGNGLS+RT  VR +K +AR PRT F    VK
Sbjct: 329 --PLPVLPRYRSKNKLVGERTK---HFSEGNGLSSRTSGVRSRKVRARMPRTLFFHHRVK 388

Query: 143 DGLPTVSSLCFVFDISLSIFTARTPRTSNLSSGMLPNMFFQGIGLEASSLEGELRART-- 202
               TVS  C VF IS S F    PRTS    G++P+ F QGIG E SSLEGEL A +  
Sbjct: 389 SVPTTVSLFCVVFVISASSFVTCAPRTSVYVPGIVPHPFSQGIGWEVSSLEGELSAWSFK 448

Query: 203 ---ARTPTHTPSILPGTFYHGIDRETSLSKGEL--------RCDPKRSK--RWRMLPT-- 262
               +T  + P I+P  F  GI RE S  +GEL        R    R +  R RM  T  
Sbjct: 449 TCAPKTSIYVPGIVPHPFSQGIGREASSLEGELSKGNGLSSRASSVRPRKVRARMPRTQF 508

Query: 263 ------SGERSSGV-----------RNNWKCTYSEGNRLCLRTSSVCPKKTRVRMP 284
                 SG  S  +           +   K  +SEGNRL  RTS V P+K R RMP
Sbjct: 509 FHRRIKSGPASVSLFSILLVITRFPKKPLKMLFSEGNRLSSRTSGVRPRKERARMP 546

The following BLAST results are available for this feature:
BLAST of IVF0003186 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0003186 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V5J21.9e-6054.68Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak... [more]
A0A5D3DIF84.4e-4942.21Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G0010... [more]
A0A5D3DFP24.1e-4746.52Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BG857.3e-2836.82Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VGQ54.8e-2736.49Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of IVF0003186 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0062888.12.23e-6954.32non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuw... [more]
TYK23424.12.37e-5742.70gag/pol protein [Cucumis melo var. makuwa][more]
TYK22521.11.45e-5546.52uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa][more]
KAA0037172.11.57e-3273.86putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK13901.1 putative nucleas... [more]
TYJ98800.13.98e-3238.18uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa][more]
BLAST of IVF0003186 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0003186.1IVF0003186.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0110165 cellular anatomical entity
molecular_function GO:0003824 catalytic activity
molecular_function GO:0046872 metal ion binding