IVF0003170 (gene) Melon (IVF77) v1

Overview
NameIVF0003170
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Locationchr10: 24240915 .. 24241139 (-)
RNA-Seq ExpressionIVF0003170
SyntenyIVF0003170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTTTTAATGATGAAGAGATTAAGTTCAACGTTGTTAACGTGATGAAGTTCCCTATTGATGTTGAAAACTACAACGCAATAGAGTCCCTTGGATGGGACTATTGCAAGGAAAAAGCCTATTATGGGCGGTTTAACATTGGAGAATTCCTTAAAATAGATGAACCAAACTATATACTAGAAGAAGTAAACCAAAGGCGAAAAGAAGACAAAGCCATCAATTAA

mRNA sequence

ATGCGTTTTAATGATGAAGAGATTAAGTTCAACGTTGTTAACGTGATGAAGTTCCCTATTGATGTTGAAAACTACAACGCAATAGAGTCCCTTGGATGGGACTATTGCAAGGAAAAAGCCTATTATGGGCGGTTTAACATTGGAGAATTCCTTAAAATAGATGAACCAAACTATATACTAGAAGAAGTAAACCAAAGGCGAAAAGAAGACAAAGCCATCAATTAA

Coding sequence (CDS)

ATGCGTTTTAATGATGAAGAGATTAAGTTCAACGTTGTTAACGTGATGAAGTTCCCTATTGATGTTGAAAACTACAACGCAATAGAGTCCCTTGGATGGGACTATTGCAAGGAAAAAGCCTATTATGGGCGGTTTAACATTGGAGAATTCCTTAAAATAGATGAACCAAACTATATACTAGAAGAAGTAAACCAAAGGCGAAAAGAAGACAAAGCCATCAATTAA

Protein sequence

MRFNDEEIKFNVVNVMKFPIDVENYNAIESLGWDYCKEKAYYGRFNIGEFLKIDEPNYILEEVNQRRKEDKAIN
Homology
BLAST of IVF0003170 vs. ExPASy TrEMBL
Match: A0A5D3CA15 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold76G00120 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.9e-28
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0

Query: 1   MRFNDEEIKFNVVNVMKFPIDVENYNAIESLGWDYCKEKAYYGRFNIGEFLKIDEPNYIL 60
           MRFNDEEIKFNVVNVMKFPIDVENYNAIESLGWDYCKEKAYYGRFNIGEFLKIDEPNYIL
Sbjct: 160 MRFNDEEIKFNVVNVMKFPIDVENYNAIESLGWDYCKEKAYYGRFNIGEFLKIDEPNYIL 219

Query: 61  EE 63
           EE
Sbjct: 220 EE 221

BLAST of IVF0003170 vs. ExPASy TrEMBL
Match: A0A5A7V931 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G001730 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.8e-19
Identity = 49/71 (69.01%), Postives = 57/71 (80.28%), Query Frame = 0

Query: 1   MRFNDEEIKFNVVNVMKFPIDVENYNAIESLGWDYCKEKAYYGRFNIGEFLKIDEPNYIL 60
           M FN+EEI FNV+N MKFP +VENY+AIESLGWDYCKE+AYY  F+  EFL+ DEP+YIL
Sbjct: 207 MHFNNEEITFNVINAMKFPANVENYSAIESLGWDYCKEEAYYELFSTEEFLEEDEPDYIL 266

Query: 61  EEVNQRRKEDK 72
           EEVN    E K
Sbjct: 267 EEVNAVSGEKK 277

BLAST of IVF0003170 vs. ExPASy TrEMBL
Match: A0A5D3DTC1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G002140 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.8e-19
Identity = 49/71 (69.01%), Postives = 57/71 (80.28%), Query Frame = 0

Query: 1   MRFNDEEIKFNVVNVMKFPIDVENYNAIESLGWDYCKEKAYYGRFNIGEFLKIDEPNYIL 60
           M FN+EEI FNV+N MKFP +VENY+AIESLGWDYCKE+AYY  F+  EFL+ DEP+YIL
Sbjct: 183 MHFNNEEITFNVINAMKFPANVENYSAIESLGWDYCKEEAYYELFSTEEFLEEDEPDYIL 242

Query: 61  EEVNQRRKEDK 72
           EEVN    E K
Sbjct: 243 EEVNAVSGEKK 253

BLAST of IVF0003170 vs. ExPASy TrEMBL
Match: A0A5D3BYK3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2119G00360 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.2e-17
Identity = 47/71 (66.20%), Postives = 56/71 (78.87%), Query Frame = 0

Query: 1   MRFNDEEIKFNVVNVMKFPIDVENYNAIESLGWDYCKEKAYYGRFNIGEFLKIDEPNYIL 60
           M FNDEEIKFN+VNV+KFP DVEN +AIES  WDYC+E+A Y  F+  EFL+ D+PNYIL
Sbjct: 76  MSFNDEEIKFNIVNVIKFPSDVENCSAIESFEWDYCEEEACYELFSTNEFLEEDKPNYIL 135

Query: 61  EEVNQRRKEDK 72
           EEVN    E+K
Sbjct: 136 EEVNPVSDENK 146

BLAST of IVF0003170 vs. ExPASy TrEMBL
Match: A0A5D3BJ04 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold896G00480 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 6.4e-16
Identity = 40/55 (72.73%), Postives = 48/55 (87.27%), Query Frame = 0

Query: 3   FNDEEIKFNVVNVMKFPIDVENYNAIESLGWDYCKEKAYYGRFNIGEFLKIDEPN 58
           FNDEEIKFN+VN MKFP D+ENY+AIESLGWDYC+E+AYY  F+  EFL+ DEP+
Sbjct: 71  FNDEEIKFNIVNAMKFPTDIENYSAIESLGWDYCEEEAYYELFSTKEFLEEDEPD 125

BLAST of IVF0003170 vs. NCBI nr
Match: KAA0065469.1 (uncharacterized protein E6C27_scaffold17G001650 [Cucumis melo var. makuwa] >TYK08711.1 uncharacterized protein E5676_scaffold76G00120 [Cucumis melo var. makuwa])

HSP 1 Score: 136 bits (342), Expect = 1.15e-37
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0

Query: 1   MRFNDEEIKFNVVNVMKFPIDVENYNAIESLGWDYCKEKAYYGRFNIGEFLKIDEPNYIL 60
           MRFNDEEIKFNVVNVMKFPIDVENYNAIESLGWDYCKEKAYYGRFNIGEFLKIDEPNYIL
Sbjct: 160 MRFNDEEIKFNVVNVMKFPIDVENYNAIESLGWDYCKEKAYYGRFNIGEFLKIDEPNYIL 219

Query: 61  EE 62
           EE
Sbjct: 220 EE 221

BLAST of IVF0003170 vs. NCBI nr
Match: TYK26585.1 (uncharacterized protein E5676_scaffold313G002140 [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (263), Expect = 6.57e-26
Identity = 47/64 (73.44%), Postives = 55/64 (85.94%), Query Frame = 0

Query: 1   MRFNDEEIKFNVVNVMKFPIDVENYNAIESLGWDYCKEKAYYGRFNIGEFLKIDEPNYIL 60
           M FN+EEI FNV+N MKFP +VENY+AIESLGWDYCKE+AYY  F+  EFL+ DEP+YIL
Sbjct: 183 MHFNNEEITFNVINAMKFPANVENYSAIESLGWDYCKEEAYYELFSTEEFLEEDEPDYIL 242

Query: 61  EEVN 64
           EEVN
Sbjct: 243 EEVN 246

BLAST of IVF0003170 vs. NCBI nr
Match: KAA0062395.1 (uncharacterized protein E6C27_scaffold154G001730 [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (263), Expect = 1.06e-25
Identity = 47/64 (73.44%), Postives = 55/64 (85.94%), Query Frame = 0

Query: 1   MRFNDEEIKFNVVNVMKFPIDVENYNAIESLGWDYCKEKAYYGRFNIGEFLKIDEPNYIL 60
           M FN+EEI FNV+N MKFP +VENY+AIESLGWDYCKE+AYY  F+  EFL+ DEP+YIL
Sbjct: 207 MHFNNEEITFNVINAMKFPANVENYSAIESLGWDYCKEEAYYELFSTEEFLEEDEPDYIL 266

Query: 61  EEVN 64
           EEVN
Sbjct: 267 EEVN 270

BLAST of IVF0003170 vs. NCBI nr
Match: KAA0066655.1 (uncharacterized protein E6C27_scaffold979G00870 [Cucumis melo var. makuwa] >TYK04098.1 uncharacterized protein E5676_scaffold2119G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 100 bits (249), Expect = 1.01e-24
Identity = 47/71 (66.20%), Postives = 56/71 (78.87%), Query Frame = 0

Query: 1   MRFNDEEIKFNVVNVMKFPIDVENYNAIESLGWDYCKEKAYYGRFNIGEFLKIDEPNYIL 60
           M FNDEEIKFN+VNV+KFP DVEN +AIES  WDYC+E+A Y  F+  EFL+ D+PNYIL
Sbjct: 76  MSFNDEEIKFNIVNVIKFPSDVENCSAIESFEWDYCEEEACYELFSTNEFLEEDKPNYIL 135

Query: 61  EEVNQRRKEDK 71
           EEVN    E+K
Sbjct: 136 EEVNPVSDENK 146

BLAST of IVF0003170 vs. NCBI nr
Match: KAA0059788.1 (uncharacterized protein E6C27_scaffold108G00530 [Cucumis melo var. makuwa] >TYJ99800.1 uncharacterized protein E5676_scaffold896G00480 [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 8.32e-23
Identity = 40/55 (72.73%), Postives = 48/55 (87.27%), Query Frame = 0

Query: 3   FNDEEIKFNVVNVMKFPIDVENYNAIESLGWDYCKEKAYYGRFNIGEFLKIDEPN 57
           FNDEEIKFN+VN MKFP D+ENY+AIESLGWDYC+E+AYY  F+  EFL+ DEP+
Sbjct: 71  FNDEEIKFNIVNAMKFPTDIENYSAIESLGWDYCEEEAYYELFSTKEFLEEDEPD 125

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CA151.9e-28100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V9312.8e-1969.01Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DTC12.8e-1969.01Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BYK31.2e-1766.20Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BJ046.4e-1672.73Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0065469.11.15e-37100.00uncharacterized protein E6C27_scaffold17G001650 [Cucumis melo var. makuwa] >TYK0... [more]
TYK26585.16.57e-2673.44uncharacterized protein E5676_scaffold313G002140 [Cucumis melo var. makuwa][more]
KAA0062395.11.06e-2573.44uncharacterized protein E6C27_scaffold154G001730 [Cucumis melo var. makuwa][more]
KAA0066655.11.01e-2466.20uncharacterized protein E6C27_scaffold979G00870 [Cucumis melo var. makuwa] >TYK0... [more]
KAA0059788.18.32e-2372.73uncharacterized protein E6C27_scaffold108G00530 [Cucumis melo var. makuwa] >TYJ9... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0003170.1IVF0003170.1mRNA