IVF0003168 (gene) Melon (IVF77) v1

Overview


Name	IVF0003168
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	transmembrane protein 208 homolog
Location	chr02: 18454232 .. 18455478 (+)
RNA-Seq Expression	IVF0003168
Synteny	IVF0003168

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAGCCAACCTATGGTGATGATGGTGAACTTCTAGATGGTGGATTTGATATAAGTACTGGTGAAATTTGTGGGTATGTCTTCTTTCTTCTTAATGTATAACCATTACTCAGTTTCATGCATGTTTTTATCTCCATTACATAAAGTATAATTGTTGAGTACAGACCTGACATATTTAATTGTTCTGTGACCCAAGTTTAAGGTGAGCGATTGCTCTGAAATTTGCTAAGAATTGTTATGATATTGTTCACCAAATATCAAATTTCATAAGAAAGCTGAAGTTATTTTTCTTAATCGTCGTTCTAAAATTAAGTCTTTTAAATACTGGCCATATCAACCTACAACTGTGGCATATTATTCTATTTCAGTTTCCTTTGTAGTTATCATTTCCTTTCCGCCTGAATTTCGTGAATAAATTGACTTTCATTTAAAGAATTGTAAATTGATATTTAGTATAATTGTCTATTGGCTTAATAACTCTCCATGGAGGGCAATATACATAGAAATCACGGTTGTTTTGTCATTTTCTTTACTGGATATCTTTCAATTTTCTTTCTTGAACATATTTCAAATTGGATAGTGATATATAAGCAAGCTTGCAGCTTCAAAAAGAATAGGCTTATTGGGTTTTTAAGTTTTCTGGGAAATGGTTCTGCTCTACTTGTTGCTTTGATCAATTGATGTGTTTACCATCACCAATGTGACAGAACAATTCCATGGTAATGTTTTTGGCTTACATAATATTGAGTGGTTTTGTATGGGATTTTTCCATTCAGTGGAAAAGGTGGTGTTTATAATATGGATGGAGTACTTGAAAGGAACAGATGGCTTTTCAGTGACTCTTTTTCTTTTTTTAATCGTTTTATGAATCTTGTTATGTCGTCTGCTTTTTCTTGGTGTAAAACTAAGTATCCCTTCTCTCATTTCAACCTTTCTTTTTTAGTTAGTAATTGGTGATCTCTTATGTAACAAGTTTTTGCTGTTTATGGTTCTTCCTTGTTCTTTTACCGAAAAAATTATGGATTGACTTTAAAAAAGAAGTTGGAATCCAATATGGATAGCCTTCCATCTGTCAACGATTTTTTGACATTTCAATAATTAATCGAAACATCTTGATGGTTTGTCTTATTTTTTACAGCTACATGCATGATCTGATCTACATTACAAGCTTTGTGCAAATAATGTCAATCCTCTTCGGGAAGTTTTGGTACACCTACCTTGTGGTAAGGTCTATTCACTTTTGA

mRNA sequence

ATGGCAAAGCCAACCTATGGTGATGATGGTGAACTTCTAGATGGTGGATTTGATATAAGTACTGGTGAAATTTGTGGCTACATGCATGATCTGATCTACATTACAAGCTTTGTGCAAATAATGTCAATCCTCTTCGGGAAGTTTTGGTACACCTACCTTGTGGTAAGGTCTATTCACTTTTGA

Coding sequence (CDS)

ATGGCAAAGCCAACCTATGGTGATGATGGTGAACTTCTAGATGGTGGATTTGATATAAGTACTGGTGAAATTTGTGGCTACATGCATGATCTGATCTACATTACAAGCTTTGTGCAAATAATGTCAATCCTCTTCGGGAAGTTTTGGTACACCTACCTTGTGGTAAGGTCTATTCACTTTTGA

Protein sequence

MAKPTYGDDGELLDGGFDISTGEICGYMHDLIYITSFVQIMSILFGKFWYTYLVVRSIHF

Homology

[Close]

BLAST of IVF0003168 vs. ExPASy Swiss-Prot
Match: Q6NYP0 (Transmembrane protein 208 OS=Danio rerio OX=7955 GN=tmem208 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.1e-06
Identity = 25/62 (40.32%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 1   MAKPTYGDDGELLDGGFDISTGE-ICGYMHDLIYITSFVQIMSILFGKFWYTYLV--VRS 60
           MAKP + +DG LLDGG D++  + +  ++ D+I +T+ VQ++S L   FWY +L+   R+
Sbjct: 74  MAKPAFAEDGSLLDGGIDLNMEQGMAEHLKDVILLTAIVQVLSTLSSYFWYLWLLAPARA 133

[Close]

BLAST of IVF0003168 vs. ExPASy Swiss-Prot
Match: Q54UB0 (Transmembrane protein 208 homolog OS=Dictyostelium discoideum OX=44689 GN=tmem208 PE=3 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 3.3e-04
Identity = 21/55 (38.18%), Postives = 34/55 (61.82%), Query Frame = 0


Query: 1   MAKPTYGDDGELLDGGFDISTGEICGYMHDLIYITSFVQIMSILFGKFWYTYLVV 56
           M K TY ++GEL+DGG D++ G +  Y  D+IY+   +Q + ++  K  Y  LV+
Sbjct: 68  MCKLTYDNNGELIDGGSDLNQGGMTEYYFDIIYVCCIIQGLGLISDKCLYLILVI 122

[Close]

BLAST of IVF0003168 vs. ExPASy TrEMBL
Match: A0A6J1KBQ8 (transmembrane protein 208 homolog OS=Cucurbita maxima OX=3661 GN=LOC111494021 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 5.9e-20
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1   MAKPTYGDDGELLDGGFDISTGEICGYMHDLIYITSFVQIMSILFGKFWYTYLVV 56
           MA PTYGDDGELLDGGFD+STG ICGYMHD+IYITSFVQIMSIL GKFWYTYLV+
Sbjct: 68  MADPTYGDDGELLDGGFDMSTGGICGYMHDVIYITSFVQIMSILSGKFWYTYLVI 122

[Close]

BLAST of IVF0003168 vs. ExPASy TrEMBL
Match: A0A6J1G433 (transmembrane protein 208 homolog OS=Cucurbita moschata OX=3662 GN=LOC111450556 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 5.9e-20
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1   MAKPTYGDDGELLDGGFDISTGEICGYMHDLIYITSFVQIMSILFGKFWYTYLVV 56
           MA PTYGDDGELLDGGFD+STG ICGYMHD+IYITSFVQIMSIL GKFWYTYLV+
Sbjct: 68  MADPTYGDDGELLDGGFDMSTGGICGYMHDVIYITSFVQIMSILSGKFWYTYLVI 122

[Close]

BLAST of IVF0003168 vs. ExPASy TrEMBL
Match: A0A5D3BBK4 (Transmembrane protein 208-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00150 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 7.7e-20
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1  MAKPTYGDDGELLDGGFDISTGEICGYMHDLIYITSFVQIMSILFGKFWYTYLVV 56
          MAKPTYGDDGELLDGGFD+ST  ICGYMHD+IYITSFVQIMSIL GKFWYTYLV+
Sbjct: 1  MAKPTYGDDGELLDGGFDMSTDGICGYMHDVIYITSFVQIMSILSGKFWYTYLVI 55

[Close]

BLAST of IVF0003168 vs. ExPASy TrEMBL
Match: A0A1S3BUY1 (transmembrane protein 208 homolog OS=Cucumis melo OX=3656 GN=LOC103493461 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 7.7e-20
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1   MAKPTYGDDGELLDGGFDISTGEICGYMHDLIYITSFVQIMSILFGKFWYTYLVV 56
           MAKPTYGDDGELLDGGFD+ST  ICGYMHD+IYITSFVQIMSIL GKFWYTYLV+
Sbjct: 68  MAKPTYGDDGELLDGGFDMSTDGICGYMHDVIYITSFVQIMSILSGKFWYTYLVI 122

[Close]

BLAST of IVF0003168 vs. ExPASy TrEMBL
Match: A0A444EU12 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00022482 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.0e-19
Identity = 49/57 (85.96%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 1   MAKPTYGDDGELLDGGFDISTGEICGYMHDLIYITSFVQIMSILFGKFWYTYLVVRS 58
           MAKPTY DDGELLDGG+D+STG ICGY+HDLIYITSFVQI SIL GKFW+TYLVVRS
Sbjct: 68  MAKPTYSDDGELLDGGYDMSTGGICGYLHDLIYITSFVQITSILSGKFWWTYLVVRS 124

[Close]

BLAST of IVF0003168 vs. NCBI nr
Match: KAA0043099.1 (transmembrane protein 208-like protein [Cucumis melo var. makuwa] >TYJ96389.1 transmembrane protein 208-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (261), Expect = 1.50e-27
Identity = 49/57 (85.96%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 1  MAKPTYGDDGELLDGGFDISTGEICGYMHDLIYITSFVQIMSILFGKFWYTYLVVRS 57
          MAKPTYGDDGELLDGGFD+ST  ICGYMHD+IYITSFVQIMSIL GKFWYTYLV+ +
Sbjct: 1  MAKPTYGDDGELLDGGFDMSTDGICGYMHDVIYITSFVQIMSILSGKFWYTYLVIPA 57

[Close]

BLAST of IVF0003168 vs. NCBI nr
Match: XP_022946520.1 (transmembrane protein 208 homolog [Cucurbita moschata] >XP_022999772.1 transmembrane protein 208 homolog [Cucurbita maxima] >KAG6599131.1 Transmembrane protein 208, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030072.1 Transmembrane protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 105 bits (262), Expect = 6.81e-27
Identity = 49/57 (85.96%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 1   MAKPTYGDDGELLDGGFDISTGEICGYMHDLIYITSFVQIMSILFGKFWYTYLVVRS 57
           MA PTYGDDGELLDGGFD+STG ICGYMHD+IYITSFVQIMSIL GKFWYTYLV+ +
Sbjct: 68  MADPTYGDDGELLDGGFDMSTGGICGYMHDVIYITSFVQIMSILSGKFWYTYLVIPA 124

[Close]

BLAST of IVF0003168 vs. NCBI nr
Match: RWW13789.1 (hypothetical protein GW17_00022482 [Ensete ventricosum] >RWW58202.1 hypothetical protein BHE74_00034966 [Ensete ventricosum])

HSP 1 Score: 104 bits (259), Expect = 7.94e-27
Identity = 49/57 (85.96%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 1   MAKPTYGDDGELLDGGFDISTGEICGYMHDLIYITSFVQIMSILFGKFWYTYLVVRS 57
           MAKPTY DDGELLDGG+D+STG ICGY+HDLIYITSFVQI SIL GKFW+TYLVVRS
Sbjct: 68  MAKPTYSDDGELLDGGYDMSTGGICGYLHDLIYITSFVQITSILSGKFWWTYLVVRS 124

[Close]

BLAST of IVF0003168 vs. NCBI nr
Match: KAG2701521.1 (hypothetical protein I3760_06G049400 [Carya illinoinensis])

HSP 1 Score: 103 bits (258), Expect = 8.52e-27
Identity = 45/60 (75.00%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 1   MAKPTYGDDGELLDGGFDISTGEICGYMHDLIYITSFVQIMSILFGKFWYTYLVVRSIHF 60
           MA+P Y DDGEL DGGFD++TG +CGY+HD+IYITSFVQ+MSI+ GKFWYTYLVVRS++F
Sbjct: 68  MAQPAYADDGELFDGGFDMTTGGVCGYLHDVIYITSFVQVMSIISGKFWYTYLVVRSVYF 127

[Close]

BLAST of IVF0003168 vs. NCBI nr
Match: XP_008452429.1 (PREDICTED: transmembrane protein 208 homolog [Cucumis melo])

HSP 1 Score: 105 bits (261), Expect = 9.64e-27
Identity = 49/57 (85.96%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 1   MAKPTYGDDGELLDGGFDISTGEICGYMHDLIYITSFVQIMSILFGKFWYTYLVVRS 57
           MAKPTYGDDGELLDGGFD+ST  ICGYMHD+IYITSFVQIMSIL GKFWYTYLV+ +
Sbjct: 68  MAKPTYGDDGELLDGGFDMSTDGICGYMHDVIYITSFVQIMSILSGKFWYTYLVIPA 124

[Close]

BLAST of IVF0003168 vs. TAIR 10
Match: AT2G23940.1 (Protein of unknown function (DUF788) )

HSP 1 Score: 91.7 bits (226), Expect = 2.2e-19
Identity = 40/55 (72.73%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 1   MAKPTYGDDGELLDGGFDISTGEICGYMHDLIYITSFVQIMSILFGKFWYTYLVV 56
           MAKP+  DDGEL+DGGFD++TG ICGY+HD+IYIT FVQ+ SI+ GKFWYTYLV+
Sbjct: 68  MAKPSVTDDGELIDGGFDMTTGGICGYLHDVIYITCFVQLASIITGKFWYTYLVI 122

[Close]

BLAST of IVF0003168 vs. TAIR 10
Match: AT4G30500.1 (Protein of unknown function (DUF788) )

HSP 1 Score: 84.0 bits (206), Expect = 4.6e-17
Identity = 37/55 (67.27%), Postives = 46/55 (83.64%), Query Frame = 0


Query: 1   MAKPTYGDDGELLDGGFDISTGEICGYMHDLIYITSFVQIMSILFGKFWYTYLVV 56
           MAKP+  D GELLDGGFD+ST  +CGY+HD++YIT FVQ+ SI+ GKFWY YLV+
Sbjct: 68  MAKPSVSDAGELLDGGFDMSTPGMCGYLHDVLYITCFVQVGSIISGKFWYAYLVI 122

The following BLAST results are available for this feature:

BLAST of IVF0003168 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NYP0	2.1e-06	40.32	Transmembrane protein 208 OS=Danio rerio OX=7955 GN=tmem208 PE=2 SV=1	[more]
Q54UB0	3.3e-04	38.18	Transmembrane protein 208 homolog OS=Dictyostelium discoideum OX=44689 GN=tmem20...	[more]

BLAST of IVF0003168 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KBQ8	5.9e-20	89.09	transmembrane protein 208 homolog OS=Cucurbita maxima OX=3661 GN=LOC111494021 PE...	[more]
A0A6J1G433	5.9e-20	89.09	transmembrane protein 208 homolog OS=Cucurbita moschata OX=3662 GN=LOC111450556 ...	[more]
A0A5D3BBK4	7.7e-20	89.09	Transmembrane protein 208-like protein OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3BUY1	7.7e-20	89.09	transmembrane protein 208 homolog OS=Cucumis melo OX=3656 GN=LOC103493461 PE=3 S...	[more]
A0A444EU12	1.0e-19	85.96	Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00022482 PE=3 SV=1	[more]

BLAST of IVF0003168 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043099.1	1.50e-27	85.96	transmembrane protein 208-like protein [Cucumis melo var. makuwa] >TYJ96389.1 tr...	[more]
XP_022946520.1	6.81e-27	85.96	transmembrane protein 208 homolog [Cucurbita moschata] >XP_022999772.1 transmemb...	[more]
RWW13789.1	7.94e-27	85.96	hypothetical protein GW17_00022482 [Ensete ventricosum] >RWW58202.1 hypothetical...	[more]
KAG2701521.1	8.52e-27	75.00	hypothetical protein I3760_06G049400 [Carya illinoinensis]	[more]
XP_008452429.1	9.64e-27	85.96	PREDICTED: transmembrane protein 208 homolog [Cucumis melo]	[more]

BLAST of IVF0003168 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G23940.1	2.2e-19	72.73	Protein of unknown function (DUF788)	[more]
AT4G30500.1	4.6e-17	67.27	Protein of unknown function (DUF788)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008506	SRP-independent targeting protein 2/TMEM208	PFAM	PF05620	TMEM208_SND2	coord: 1..55 e-value: 1.4E-19 score: 70.5
IPR008506	SRP-independent targeting protein 2/TMEM208	PANTHER	PTHR13505	TRANSMEMBRANE PROTEIN 208	coord: 1..56
None	No IPR available	PANTHER	PTHR13505:SF8	BNAA01G06570D PROTEIN	coord: 1..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0003168.2	IVF0003168.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006624	vacuolar protein processing
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005773	vacuole