IVF0003166 (gene) Melon (IVF77) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCGTGGGCCAGCATGCAACAGGTTCAGATGGAACAATGAGGTAAAGTGCATCATTGTCGAGAAGGAACTGTTCGACAACTGGTTTAGGGTAAGGAAACTGATAAAAACGTGACAATAATTTCGTAGTGTACTTTGATTGATGATTTTTTGTAACGATAGTTTGAAGTGCTCTTATTTTTTATGCAGTCACATCCTGCAGCGAAGGGTCTCCTTAACAAACCTTTTTCCTATTATGACAAAGTTACATATGTGGTCAGGAGGGATAGGGCGAGGTGTCGCTTTGCAGACATGTTCACCCGACGTCGGGTCTAATGAGCCCACCGAATATGAGGGGTTTGACATGTCGGGTGAAAATGATATGGAGTTTCCATCCATGTACAACCAAGAGATTGACATGTTTCAAGATGATGTATGCACATCACAACCTACTCACGCATCAGACGATAGTTCTGATCGAGCGGATCCAAGTGAAAGAAGGGAAGCTAGCGCGAGGGTAAGATTGAGATGA ATGCGTGGGCCAGCATGCAACAGGTTCAGATGGAACAATGAGGTAAAGTGCATCATTGTCGAGAAGGAACTGTTCGACAACTGGTTTAGGCGAAGGGTCTCCTTAACAAACCTTTTTCCTATTATGACAAAGTTACATATGTGGTCAGGAGGGATAGGGCGAGGTGTCGCTTTGCAGACATGTTCACCCGACGTCGGGTCTAATGAGCCCACCGAATATGAGGGGTTTGACATGTCGGGTGAAAATGATATGGAGTTTCCATCCATGTACAACCAAGAGATTGACATGTTTCAAGATGATGTATGCACATCACAACCTACTCACGCATCAGACGATAGTTCTGATCGAGCGGATCCAAGTGAAAGAAGGGAAGCTAGCGCGAGGGTAAGATTGAGATGA ATGCGTGGGCCAGCATGCAACAGGTTCAGATGGAACAATGAGGTAAAGTGCATCATTGTCGAGAAGGAACTGTTCGACAACTGGTTTAGGCGAAGGGTCTCCTTAACAAACCTTTTTCCTATTATGACAAAGTTACATATGTGGTCAGGAGGGATAGGGCGAGGTGTCGCTTTGCAGACATGTTCACCCGACGTCGGGTCTAATGAGCCCACCGAATATGAGGGGTTTGACATGTCGGGTGAAAATGATATGGAGTTTCCATCCATGTACAACCAAGAGATTGACATGTTTCAAGATGATGTATGCACATCACAACCTACTCACGCATCAGACGATAGTTCTGATCGAGCGGATCCAAGTGAAAGAAGGGAAGCTAGCGCGAGGGTAAGATTGAGATGA MRGPACNRFRWNNEVKCIIVEKELFDNWFRRRVSLTNLFPIMTKLHMWSGGIGRGVALQTCSPDVGSNEPTEYEGFDMSGENDMEFPSMYNQEIDMFQDDVCTSQPTHASDDSSDRADPSERREASARVRLR Homology
BLAST of IVF0003166 vs. ExPASy TrEMBL
Match: A0A5D3E3R5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold426G00720 PE=4 SV=1) HSP 1 Score: 269.2 bits (687), Expect = 8.9e-69 Identity = 128/129 (99.22%), Postives = 129/129 (100.00%), Query Frame = 0
BLAST of IVF0003166 vs. ExPASy TrEMBL
Match: A0A5D3BQI7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00550 PE=3 SV=1) HSP 1 Score: 109.4 bits (272), Expect = 1.2e-20 Identity = 66/135 (48.89%), Postives = 80/135 (59.26%), Query Frame = 0
BLAST of IVF0003166 vs. ExPASy TrEMBL
Match: A0A5A7U768 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00800 PE=4 SV=1) HSP 1 Score: 102.8 bits (255), Expect = 1.1e-18 Identity = 63/134 (47.01%), Postives = 83/134 (61.94%), Query Frame = 0
BLAST of IVF0003166 vs. ExPASy TrEMBL
Match: A0A5D3BL06 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold446G00420 PE=4 SV=1) HSP 1 Score: 102.1 bits (253), Expect = 1.9e-18 Identity = 54/106 (50.94%), Postives = 67/106 (63.21%), Query Frame = 0
BLAST of IVF0003166 vs. ExPASy TrEMBL
Match: A0A5A7TT49 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001460 PE=4 SV=1) HSP 1 Score: 101.7 bits (252), Expect = 2.4e-18 Identity = 60/126 (47.62%), Postives = 76/126 (60.32%), Query Frame = 0
BLAST of IVF0003166 vs. NCBI nr
Match: KAA0046362.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK30526.1 retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 269 bits (687), Expect = 4.83e-89 Identity = 128/129 (99.22%), Postives = 129/129 (100.00%), Query Frame = 0
BLAST of IVF0003166 vs. NCBI nr
Match: KAA0033884.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK01268.1 retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 110 bits (274), Expect = 1.04e-25 Identity = 63/118 (53.39%), Postives = 75/118 (63.56%), Query Frame = 0
BLAST of IVF0003166 vs. NCBI nr
Match: KAA0050217.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ98191.1 retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 102 bits (254), Expect = 1.64e-24 Identity = 63/134 (47.01%), Postives = 83/134 (61.94%), Query Frame = 0
BLAST of IVF0003166 vs. NCBI nr
Match: KAA0067748.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ97396.1 retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 101 bits (251), Expect = 1.22e-23 Identity = 58/117 (49.57%), Postives = 72/117 (61.54%), Query Frame = 0
BLAST of IVF0003166 vs. NCBI nr
Match: KAA0066061.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ99836.1 retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 101 bits (252), Expect = 1.59e-23 Identity = 54/106 (50.94%), Postives = 67/106 (63.21%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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