IVF0003166 (gene) Melon (IVF77) v1

Overview
NameIVF0003166
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr09: 18640279 .. 18640788 (-)
RNA-Seq ExpressionIVF0003166
SyntenyIVF0003166
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTGGGCCAGCATGCAACAGGTTCAGATGGAACAATGAGGTAAAGTGCATCATTGTCGAGAAGGAACTGTTCGACAACTGGTTTAGGGTAAGGAAACTGATAAAAACGTGACAATAATTTCGTAGTGTACTTTGATTGATGATTTTTTGTAACGATAGTTTGAAGTGCTCTTATTTTTTATGCAGTCACATCCTGCAGCGAAGGGTCTCCTTAACAAACCTTTTTCCTATTATGACAAAGTTACATATGTGGTCAGGAGGGATAGGGCGAGGTGTCGCTTTGCAGACATGTTCACCCGACGTCGGGTCTAATGAGCCCACCGAATATGAGGGGTTTGACATGTCGGGTGAAAATGATATGGAGTTTCCATCCATGTACAACCAAGAGATTGACATGTTTCAAGATGATGTATGCACATCACAACCTACTCACGCATCAGACGATAGTTCTGATCGAGCGGATCCAAGTGAAAGAAGGGAAGCTAGCGCGAGGGTAAGATTGAGATGA

mRNA sequence

ATGCGTGGGCCAGCATGCAACAGGTTCAGATGGAACAATGAGGTAAAGTGCATCATTGTCGAGAAGGAACTGTTCGACAACTGGTTTAGGCGAAGGGTCTCCTTAACAAACCTTTTTCCTATTATGACAAAGTTACATATGTGGTCAGGAGGGATAGGGCGAGGTGTCGCTTTGCAGACATGTTCACCCGACGTCGGGTCTAATGAGCCCACCGAATATGAGGGGTTTGACATGTCGGGTGAAAATGATATGGAGTTTCCATCCATGTACAACCAAGAGATTGACATGTTTCAAGATGATGTATGCACATCACAACCTACTCACGCATCAGACGATAGTTCTGATCGAGCGGATCCAAGTGAAAGAAGGGAAGCTAGCGCGAGGGTAAGATTGAGATGA

Coding sequence (CDS)

ATGCGTGGGCCAGCATGCAACAGGTTCAGATGGAACAATGAGGTAAAGTGCATCATTGTCGAGAAGGAACTGTTCGACAACTGGTTTAGGCGAAGGGTCTCCTTAACAAACCTTTTTCCTATTATGACAAAGTTACATATGTGGTCAGGAGGGATAGGGCGAGGTGTCGCTTTGCAGACATGTTCACCCGACGTCGGGTCTAATGAGCCCACCGAATATGAGGGGTTTGACATGTCGGGTGAAAATGATATGGAGTTTCCATCCATGTACAACCAAGAGATTGACATGTTTCAAGATGATGTATGCACATCACAACCTACTCACGCATCAGACGATAGTTCTGATCGAGCGGATCCAAGTGAAAGAAGGGAAGCTAGCGCGAGGGTAAGATTGAGATGA

Protein sequence

MRGPACNRFRWNNEVKCIIVEKELFDNWFRRRVSLTNLFPIMTKLHMWSGGIGRGVALQTCSPDVGSNEPTEYEGFDMSGENDMEFPSMYNQEIDMFQDDVCTSQPTHASDDSSDRADPSERREASARVRLR
Homology
BLAST of IVF0003166 vs. ExPASy TrEMBL
Match: A0A5D3E3R5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold426G00720 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 8.9e-69
Identity = 128/129 (99.22%), Postives = 129/129 (100.00%), Query Frame = 0

Query: 1   MRGPACNRFRWNNEVKCIIVEKELFDNWFRRRVSLTNLFPIMTKLHMWSGGIGRGVALQT 60
           MRGPACNRFRWNNEVKCIIVEKELFDNWFRRRVSLTNLFPIMTKLHMWSGGIGRGVALQT
Sbjct: 71  MRGPACNRFRWNNEVKCIIVEKELFDNWFRRRVSLTNLFPIMTKLHMWSGGIGRGVALQT 130

Query: 61  CSPDVGSNEPTEYEGFDMSGENDMEFPSMYNQEIDMFQDDVCTSQPTHASDDSSDRADPS 120
           CSPDVGSNEPTEYEGFDMSGENDMEFPSMYNQEIDMFQDDVCTSQPTHASDDSSDRADPS
Sbjct: 131 CSPDVGSNEPTEYEGFDMSGENDMEFPSMYNQEIDMFQDDVCTSQPTHASDDSSDRADPS 190

Query: 121 ERREASARV 130
           ERREASAR+
Sbjct: 191 ERREASARM 199

BLAST of IVF0003166 vs. ExPASy TrEMBL
Match: A0A5D3BQI7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00550 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.2e-20
Identity = 66/135 (48.89%), Postives = 80/135 (59.26%), Query Frame = 0

Query: 1   MRGPACNRFRWNNEVKCIIVEKELFDNWFRRRVS----LTNLFPIMTKL---HMWSGGIG 60
           MR PAC+ F+WN+E K IIVEKE+FDNW R   +    L  LF    +L     W    G
Sbjct: 150 MREPACSGFKWNDEAKYIIVEKEVFDNWIRSHPAAKSLLNKLFSYYDELAYVFEWDRATG 209

Query: 61  RGVALQTCSPDVGSNEPTEYEGFDMSGENDMEFPSMYNQEIDMFQDDVCTSQPTHASDDS 120
           R V       D+GSNEP  YEGFDMS  ND+EFP MY+Q ID+ QDDV TSQP   + D 
Sbjct: 210 RFV---ETFADIGSNEPAGYEGFDMSDGNDIEFPFMYSQGIDISQDDVRTSQPA-CTSDG 269

Query: 121 SDRADPSERREASAR 129
             R+  S+R+  S R
Sbjct: 270 RIRSSESKRKRGSQR 280

BLAST of IVF0003166 vs. ExPASy TrEMBL
Match: A0A5A7U768 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00800 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.1e-18
Identity = 63/134 (47.01%), Postives = 83/134 (61.94%), Query Frame = 0

Query: 9   FRWNNEVKCIIVEKELFDNWFRRRVSLTN---------LFPIMTKL-HMWSGGIGRGVAL 68
           F WN+E KCII +KELFDNW +  V +++         LFP   +L +++      G  +
Sbjct: 37  FGWNDEAKCIIAKKELFDNWVKFEVLVSHLAVKGLFNKLFPYYDELAYVFERDRATGHFV 96

Query: 69  QTCSPDVGSNEPTEYEGFDMSGENDMEFPSMYNQEIDMFQDDVCTSQPTHASDDSSDRAD 128
           +T   DV SNEP  YEGFD+   NDM+F SMY+Q  DM  +DV   +P  AS+  +DRAD
Sbjct: 97  ET-FVDVESNEPIGYEGFDIPNGNDMKFLSMYSQGTDMSSNDVHALRPGRASNGRTDRAD 156

Query: 129 PSERREASARVRLR 133
           PS+R EAS RVRLR
Sbjct: 157 PSKREEASRRVRLR 169

BLAST of IVF0003166 vs. ExPASy TrEMBL
Match: A0A5D3BL06 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold446G00420 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.9e-18
Identity = 54/106 (50.94%), Postives = 67/106 (63.21%), Query Frame = 0

Query: 1   MRGPACNRFRWNNEVKCIIVEKELFDNWFRRRVSLTNLFPIMTKL-HMWSGGIGRGVALQ 60
           M GP+C+ F WN+E KCII EKELFDNW   +  L   F    +L +++      G  ++
Sbjct: 59  MNGPSCSGFEWNDETKCIIAEKELFDNW---KGFLNKSFSYYDELAYVFGRDRATGCFVE 118

Query: 61  TCSPDVGSNEPTEYEGFDMSGENDMEFPSMYNQEIDMFQDDVCTSQ 106
           T + DVGSNEP  Y+GFDM   NDMEFPSMY+Q IDM QDD    Q
Sbjct: 119 TFT-DVGSNEPDGYKGFDMPDGNDMEFPSMYSQRIDMSQDDCVNDQ 160

BLAST of IVF0003166 vs. ExPASy TrEMBL
Match: A0A5A7TT49 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001460 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 2.4e-18
Identity = 60/126 (47.62%), Postives = 76/126 (60.32%), Query Frame = 0

Query: 1   MRGPACNRFRWNNEVKCIIVEKELFDNWFRRRVSLTNLFPIMTKL-HMWSGGIGRGVALQ 60
           M G AC+RFRWN+E KCII EKEL       +  L   F    KL +++      G  ++
Sbjct: 102 MYGSACSRFRWNDEAKCIIAEKELHP---ATKGLLNKSFYYYDKLAYVFERDRATGRFIE 161

Query: 61  TCSPDVGSNEPTEYEGFDMSGENDMEFPSMYNQEIDMFQDDVCTSQPTHASDDSSDRADP 120
           T + D+GSNE  EYEGFDMS  NDM+FPSMY+Q IDM QDDV  S+P H SD     +  
Sbjct: 162 TFA-DIGSNEHAEYEGFDMSDGNDMKFPSMYSQGIDMSQDDVRASRPAHVSDGKPGSSRS 221

Query: 121 SERREA 126
             +RE+
Sbjct: 222 KRKRES 223

BLAST of IVF0003166 vs. NCBI nr
Match: KAA0046362.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK30526.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 269 bits (687), Expect = 4.83e-89
Identity = 128/129 (99.22%), Postives = 129/129 (100.00%), Query Frame = 0

Query: 1   MRGPACNRFRWNNEVKCIIVEKELFDNWFRRRVSLTNLFPIMTKLHMWSGGIGRGVALQT 60
           MRGPACNRFRWNNEVKCIIVEKELFDNWFRRRVSLTNLFPIMTKLHMWSGGIGRGVALQT
Sbjct: 71  MRGPACNRFRWNNEVKCIIVEKELFDNWFRRRVSLTNLFPIMTKLHMWSGGIGRGVALQT 130

Query: 61  CSPDVGSNEPTEYEGFDMSGENDMEFPSMYNQEIDMFQDDVCTSQPTHASDDSSDRADPS 120
           CSPDVGSNEPTEYEGFDMSGENDMEFPSMYNQEIDMFQDDVCTSQPTHASDDSSDRADPS
Sbjct: 131 CSPDVGSNEPTEYEGFDMSGENDMEFPSMYNQEIDMFQDDVCTSQPTHASDDSSDRADPS 190

Query: 121 ERREASARV 129
           ERREASAR+
Sbjct: 191 ERREASARM 199

BLAST of IVF0003166 vs. NCBI nr
Match: KAA0033884.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK01268.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (274), Expect = 1.04e-25
Identity = 63/118 (53.39%), Postives = 75/118 (63.56%), Query Frame = 0

Query: 1   MRGPACNRFRWNNEVKCIIVEKELFDNWFRRRVS----LTNLFPIMTKLHM---WSGGIG 60
           MR PAC+ F+WN+E K IIVEKE+FDNW R   +    L  LF    +L     W    G
Sbjct: 150 MREPACSGFKWNDEAKYIIVEKEVFDNWIRSHPAAKSLLNKLFSYYDELAYVFEWDRATG 209

Query: 61  RGVALQTCSPDVGSNEPTEYEGFDMSGENDMEFPSMYNQEIDMFQDDVCTSQPTHASD 111
           R V  +T + D+GSNEP  YEGFDMS  ND+EFP MY+Q ID+ QDDV TSQP   SD
Sbjct: 210 RFV--ETFA-DIGSNEPAGYEGFDMSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSD 264

BLAST of IVF0003166 vs. NCBI nr
Match: KAA0050217.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ98191.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (254), Expect = 1.64e-24
Identity = 63/134 (47.01%), Postives = 83/134 (61.94%), Query Frame = 0

Query: 9   FRWNNEVKCIIVEKELFDNWFRRRVSLTNL---------FPIMTKL-HMWSGGIGRGVAL 68
           F WN+E KCII +KELFDNW +  V +++L         FP   +L +++      G  +
Sbjct: 37  FGWNDEAKCIIAKKELFDNWVKFEVLVSHLAVKGLFNKLFPYYDELAYVFERDRATGHFV 96

Query: 69  QTCSPDVGSNEPTEYEGFDMSGENDMEFPSMYNQEIDMFQDDVCTSQPTHASDDSSDRAD 128
           +T   DV SNEP  YEGFD+   NDM+F SMY+Q  DM  +DV   +P  AS+  +DRAD
Sbjct: 97  ETFV-DVESNEPIGYEGFDIPNGNDMKFLSMYSQGTDMSSNDVHALRPGRASNGRTDRAD 156

Query: 129 PSERREASARVRLR 132
           PS+R EAS RVRLR
Sbjct: 157 PSKREEASRRVRLR 169

BLAST of IVF0003166 vs. NCBI nr
Match: KAA0067748.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ97396.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 101 bits (251), Expect = 1.22e-23
Identity = 58/117 (49.57%), Postives = 72/117 (61.54%), Query Frame = 0

Query: 1   MRGPACNRFRWNNEVKCIIVEKELFDNWFRRRVSLTNL----FPIMTKLHMWSGGIGRGV 60
           MRGPAC+ F WN+E KCII EKELFDNW R   +   L    FP   + H +  G  R  
Sbjct: 60  MRGPACSGFGWNDEEKCIITEKELFDNWVRSHSAAKGLVNKPFPYCDE-HAYVFGRDRAT 119

Query: 61  -ALQTCSPDVGSNEPTEYEGFDMSGENDMEFPSMYNQEIDMFQDDVCTSQPTHASDD 112
                   DVGSNEP  Y+ FDM G+ + EFP +Y+Q ID+ QDDV TS+P+ AS+D
Sbjct: 120 DRFAETFADVGSNEPGGYDRFDM-GDGNKEFPPVYSQRIDLSQDDVRTSRPSCASED 174

BLAST of IVF0003166 vs. NCBI nr
Match: KAA0066061.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ99836.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 101 bits (252), Expect = 1.59e-23
Identity = 54/106 (50.94%), Postives = 67/106 (63.21%), Query Frame = 0

Query: 1   MRGPACNRFRWNNEVKCIIVEKELFDNWFRRRVSLTNLFPIMTKL-HMWSGGIGRGVALQ 60
           M GP+C+ F WN+E KCII EKELFDNW   +  L   F    +L +++      G  ++
Sbjct: 59  MNGPSCSGFEWNDETKCIIAEKELFDNW---KGFLNKSFSYYDELAYVFGRDRATGCFVE 118

Query: 61  TCSPDVGSNEPTEYEGFDMSGENDMEFPSMYNQEIDMFQDDVCTSQ 105
           T + DVGSNEP  Y+GFDM   NDMEFPSMY+Q IDM QDD    Q
Sbjct: 119 TFT-DVGSNEPDGYKGFDMPDGNDMEFPSMYSQRIDMSQDDCVNDQ 160

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3E3R58.9e-6999.22Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BQI71.2e-2048.89Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U7681.1e-1847.01Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BL061.9e-1850.94Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TT492.4e-1847.62Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0046362.14.83e-8999.22retrotransposon protein [Cucumis melo var. makuwa] >TYK30526.1 retrotransposon p... [more]
KAA0033884.11.04e-2553.39retrotransposon protein [Cucumis melo var. makuwa] >TYK01268.1 retrotransposon p... [more]
KAA0050217.11.64e-2447.01retrotransposon protein [Cucumis melo var. makuwa] >TYJ98191.1 retrotransposon p... [more]
KAA0067748.11.22e-2349.57retrotransposon protein [Cucumis melo var. makuwa] >TYJ97396.1 retrotransposon p... [more]
KAA0066061.11.59e-2350.94retrotransposon protein [Cucumis melo var. makuwa] >TYJ99836.1 retrotransposon p... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 101..132
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 111..132

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0003166.1IVF0003166.1mRNA