IVF0003143 (gene) Melon (IVF77) v1

Overview


Name	IVF0003143
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Methyl-CpG-binding domain-containing protein 13 isoform X1
Location	chr08: 18948552 .. 18949314 (+)
RNA-Seq Expression	IVF0003143
Synteny	IVF0003143

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGATTTAATTCTAGGGCAGAGGTGTTTAGATACCTGAAAACTGCAGCAATCTGTCATCCTAAATCTGAAGAAAGCAGAACCGTCAAGGAACCAAGGAACAATGTCTGTCAAAAAAATCTACCCTCTACTCTAATTTTTGTGTTCCAATTTGCTGGTCTTTTGGATTATGAACTTTATTGATTTTTCTTTAAAAACTTCTATTATTCAAGCAATCTAGGTGGAAGTTAAGAAGACTATAGCAAAAGATTTATCTACTGGATGGATCGGAGAAATCAGAGAAATGAAGACTGCTAACAGAATAAGAAGAGATTCAGTAATTTATCATCTATTTCTATTTGTTGTGTCGTTTGGAATTTGGATATACTATCTAACCGTGCACTTTGTTTCATTTATCTATTTAGTGCCTTAAAGCTAGTGACATGCTAAACAACATGAATATTAACAAATGAACTTCTGTTTGCAGTCTTACATTAATCCAGTAAATGGACATGCACTTCGTTCAATAAGGGATGTACATCAGTATCTAACAAGTGGCAAGGTGAGCCGATTAGCACATAAATCAAGGAACCAGAGAGATAGCACCATTGACCTTCAACATGATGAAATCTCTGTAAGTGTTCTTGAGGTACTCGAAGTTAAAAATGATTATAGTCCCAAGAGTGTTCATCAATTGGTCCAACTATCACTTTATGAATTGAATGTAGTATTTTGGAGTGGTGCCCCTCTTCGATTCCCTCTCTCCAATGTGGGCCCTTGCTAA

mRNA sequence

ATGAGATTTAATTCTAGGGCAGAGGTGTTTAGATACCTGAAAACTGCAGCAATCTGTCATCCTAAATCTGAAGAAAGCAGAACCGTCAAGGAACCAAGGAACAATGTGGAAGTTAAGAAGACTATAGCAAAAGATTTATCTACTGGATGGATCGGAGAAATCAGAGAAATGAAGACTGCTAACAGAATAAGAAGAGATTCATCTTACATTAATCCAGTAAATGGACATGCACTTCGTTCAATAAGGGATGTACATCAGTATCTAACAAGTGGCAAGGTGAGCCGATTAGCACATAAATCAAGGAACCAGAGAGATAGCACCATTGACCTTCAACATGATGAAATCTCTGTAAGTGTTCTTGAGGTACTCGAAGTTAAAAATGATTATAGTCCCAAGAGTGTTCATCAATTGGTCCAACTATCACTTTATGAATTGAATGTAGTATTTTGGAGTGGTGCCCCTCTTCGATTCCCTCTCTCCAATGTGGGCCCTTGCTAA

Coding sequence (CDS)

ATGAGATTTAATTCTAGGGCAGAGGTGTTTAGATACCTGAAAACTGCAGCAATCTGTCATCCTAAATCTGAAGAAAGCAGAACCGTCAAGGAACCAAGGAACAATGTGGAAGTTAAGAAGACTATAGCAAAAGATTTATCTACTGGATGGATCGGAGAAATCAGAGAAATGAAGACTGCTAACAGAATAAGAAGAGATTCATCTTACATTAATCCAGTAAATGGACATGCACTTCGTTCAATAAGGGATGTACATCAGTATCTAACAAGTGGCAAGGTGAGCCGATTAGCACATAAATCAAGGAACCAGAGAGATAGCACCATTGACCTTCAACATGATGAAATCTCTGTAAGTGTTCTTGAGGTACTCGAAGTTAAAAATGATTATAGTCCCAAGAGTGTTCATCAATTGGTCCAACTATCACTTTATGAATTGAATGTAGTATTTTGGAGTGGTGCCCCTCTTCGATTCCCTCTCTCCAATGTGGGCCCTTGCTAA

Protein sequence

MRFNSRAEVFRYLKTAAICHPKSEESRTVKEPRNNVEVKKTIAKDLSTGWIGEIREMKTANRIRRDSSYINPVNGHALRSIRDVHQYLTSGKVSRLAHKSRNQRDSTIDLQHDEISVSVLEVLEVKNDYSPKSVHQLVQLSLYELNVVFWSGAPLRFPLSNVGPC

Homology

[Close]

BLAST of IVF0003143 vs. ExPASy TrEMBL
Match: A0A1S3AYW3 (uncharacterized protein LOC103484069 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484069 PE=4 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 2.2e-80
Identity = 156/176 (88.64%), Postives = 162/176 (92.05%), Query Frame = 0


Query: 1   MRFNSRAEVFRYLKTAAICHPKSEESRTVKEPRN-----------NVEVKKTIAKDLSTG 60
           MRFNSRAEVFRYLKTAAICHP+SEESRT+KEP N           NVEVKKTIAKDL TG
Sbjct: 37  MRFNSRAEVFRYLKTAAICHPESEESRTIKEPGNNVCQKNLPSTYNVEVKKTIAKDLPTG 96

Query: 61  WIGEIREMKTANRIRRDSSYINPVNGHALRSIRDVHQYLTSGKVSRLAHKSRNQRDSTID 120
           WIGEIRE KTANRIRRDSSYI+P+NGHALRSIRDVH+YLTSGKVSRLAHKSRNQRDSTID
Sbjct: 97  WIGEIRETKTANRIRRDSSYIDPINGHALRSIRDVHRYLTSGKVSRLAHKSRNQRDSTID 156

Query: 121 LQHDEISVSVLEVLEVKNDYSPKSVHQLVQLSLYELNVVFWSGAPLRFPLSNVGPC 166
           LQHDEISVSVLEVLEVKNDYSPKSVHQLVQLSLYE+NVVFWSGAPLRFPLSNVGPC
Sbjct: 157 LQHDEISVSVLEVLEVKNDYSPKSVHQLVQLSLYEMNVVFWSGAPLRFPLSNVGPC 212

[Close]

BLAST of IVF0003143 vs. ExPASy TrEMBL
Match: A0A5D3DH45 (Methyl-CpG-binding domain-containing protein 13 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold386G00100 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 4.5e-54
Identity = 111/125 (88.80%), Postives = 117/125 (93.60%), Query Frame = 0


Query: 1   MRFNSRAEVFRYLKTAAICHPKSEESRTVKEPRNNVEVKKTIAKDLSTGWIGEIREMKTA 60
           MRFNSRAEVFRYLKTAAICHP+SEESRT+KEP NNVEVKKTIAKDL TGWIGEIRE KTA
Sbjct: 37  MRFNSRAEVFRYLKTAAICHPESEESRTIKEPGNNVEVKKTIAKDLPTGWIGEIRETKTA 96

Query: 61  NRIRRDSSYINPVNGHALRSIRDVHQYLTSGKVSRLAHKSRNQRDSTIDLQHDEISVSVL 120
           NRIRRDSSYI+P+NGHALRSIRDVH+YLTSGKVSRLAHKSRNQRDSTIDLQHDEIS  V+
Sbjct: 97  NRIRRDSSYIDPINGHALRSIRDVHRYLTSGKVSRLAHKSRNQRDSTIDLQHDEISSPVV 156

Query: 121 EVLEV 126
              EV
Sbjct: 157 SKKEV 161

[Close]

BLAST of IVF0003143 vs. ExPASy TrEMBL
Match: A0A5A7ST33 (Methyl-CpG-binding domain-containing protein 13 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G00730 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.6e-51
Identity = 111/136 (81.62%), Postives = 117/136 (86.03%), Query Frame = 0


Query: 1   MRFNSRAEVFRYLKTAAICHPKSEESRTVKEPRN-----------NVEVKKTIAKDLSTG 60
           MRFNSRAEVFRYLKTAAICHP+SEESRT+KEP N           NVEVKKTIAKDL TG
Sbjct: 37  MRFNSRAEVFRYLKTAAICHPESEESRTIKEPGNNVCQKNLPSTYNVEVKKTIAKDLPTG 96

Query: 61  WIGEIREMKTANRIRRDSSYINPVNGHALRSIRDVHQYLTSGKVSRLAHKSRNQRDSTID 120
           WIGEIRE KTANRIRRDSSYI+P+NGHALRSIRDVH+YLTSGKVSRLAHKSRNQRDSTID
Sbjct: 97  WIGEIRETKTANRIRRDSSYIDPINGHALRSIRDVHRYLTSGKVSRLAHKSRNQRDSTID 156

Query: 121 LQHDEISVSVLEVLEV 126
           LQHDEIS  V+   EV
Sbjct: 157 LQHDEISSPVVSKKEV 172

[Close]

BLAST of IVF0003143 vs. ExPASy TrEMBL
Match: A0A0A0L6H4 (MBD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G181990 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 3.6e-51
Identity = 107/125 (85.60%), Postives = 114/125 (91.20%), Query Frame = 0


Query: 1   MRFNSRAEVFRYLKTAAICHPKSEESRTVKEPRNNVEVKKTIAKDLSTGWIGEIREMKTA 60
           MRFNSRAEVFRYLKTAAICHP+SEESRTVKEP NNVEVKKTIAKDL TGWIGEIRE KTA
Sbjct: 1   MRFNSRAEVFRYLKTAAICHPESEESRTVKEPGNNVEVKKTIAKDLPTGWIGEIRETKTA 60

Query: 61  NRIRRDSSYINPVNGHALRSIRDVHQYLTSGKVSRLAHKSRNQRDSTIDLQHDEISVSVL 120
           NRIRRDSSYI+PVNG+ALRSIRDVH+YLTSGKVSRL HKSRNQRD+ I+ QHDEIS  V+
Sbjct: 61  NRIRRDSSYIDPVNGNALRSIRDVHRYLTSGKVSRLTHKSRNQRDNNIEFQHDEISSPVV 120

Query: 121 EVLEV 126
              EV
Sbjct: 121 SKKEV 125

[Close]

BLAST of IVF0003143 vs. ExPASy TrEMBL
Match: A0A1S3AYW9 (uncharacterized protein LOC103484069 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103484069 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 6.1e-51
Identity = 108/127 (85.04%), Postives = 113/127 (88.98%), Query Frame = 0


Query: 1   MRFNSRAEVFRYLKTAAICHPKSEESRTVKEPRN-----------NVEVKKTIAKDLSTG 60
           MRFNSRAEVFRYLKTAAICHP+SEESRT+KEP N           NVEVKKTIAKDL TG
Sbjct: 37  MRFNSRAEVFRYLKTAAICHPESEESRTIKEPGNNVCQKNLPSTYNVEVKKTIAKDLPTG 96

Query: 61  WIGEIREMKTANRIRRDSSYINPVNGHALRSIRDVHQYLTSGKVSRLAHKSRNQRDSTID 117
           WIGEIRE KTANRIRRDSSYI+P+NGHALRSIRDVH+YLTSGKVSRLAHKSRNQRDSTID
Sbjct: 97  WIGEIRETKTANRIRRDSSYIDPINGHALRSIRDVHRYLTSGKVSRLAHKSRNQRDSTID 156

[Close]

BLAST of IVF0003143 vs. NCBI nr
Match: XP_008439209.1 (PREDICTED: uncharacterized protein LOC103484069 isoform X2 [Cucumis melo])

HSP 1 Score: 306 bits (785), Expect = 5.21e-104
Identity = 156/176 (88.64%), Postives = 162/176 (92.05%), Query Frame = 0


Query: 1   MRFNSRAEVFRYLKTAAICHPKSEESRTVKEPRNNV-----------EVKKTIAKDLSTG 60
           MRFNSRAEVFRYLKTAAICHP+SEESRT+KEP NNV           EVKKTIAKDL TG
Sbjct: 37  MRFNSRAEVFRYLKTAAICHPESEESRTIKEPGNNVCQKNLPSTYNVEVKKTIAKDLPTG 96

Query: 61  WIGEIREMKTANRIRRDSSYINPVNGHALRSIRDVHQYLTSGKVSRLAHKSRNQRDSTID 120
           WIGEIRE KTANRIRRDSSYI+P+NGHALRSIRDVH+YLTSGKVSRLAHKSRNQRDSTID
Sbjct: 97  WIGEIRETKTANRIRRDSSYIDPINGHALRSIRDVHRYLTSGKVSRLAHKSRNQRDSTID 156

Query: 121 LQHDEISVSVLEVLEVKNDYSPKSVHQLVQLSLYELNVVFWSGAPLRFPLSNVGPC 165
           LQHDEISVSVLEVLEVKNDYSPKSVHQLVQLSLYE+NVVFWSGAPLRFPLSNVGPC
Sbjct: 157 LQHDEISVSVLEVLEVKNDYSPKSVHQLVQLSLYEMNVVFWSGAPLRFPLSNVGPC 212

[Close]

BLAST of IVF0003143 vs. NCBI nr
Match: XP_008439211.1 (PREDICTED: uncharacterized protein LOC103484069 isoform X3 [Cucumis melo])

HSP 1 Score: 209 bits (531), Expect = 5.06e-66
Identity = 108/127 (85.04%), Postives = 113/127 (88.98%), Query Frame = 0


Query: 1   MRFNSRAEVFRYLKTAAICHPKSEESRTVKEPRNNV-----------EVKKTIAKDLSTG 60
           MRFNSRAEVFRYLKTAAICHP+SEESRT+KEP NNV           EVKKTIAKDL TG
Sbjct: 37  MRFNSRAEVFRYLKTAAICHPESEESRTIKEPGNNVCQKNLPSTYNVEVKKTIAKDLPTG 96

Query: 61  WIGEIREMKTANRIRRDSSYINPVNGHALRSIRDVHQYLTSGKVSRLAHKSRNQRDSTID 116
           WIGEIRE KTANRIRRDSSYI+P+NGHALRSIRDVH+YLTSGKVSRLAHKSRNQRDSTID
Sbjct: 97  WIGEIRETKTANRIRRDSSYIDPINGHALRSIRDVHRYLTSGKVSRLAHKSRNQRDSTID 156

[Close]

BLAST of IVF0003143 vs. NCBI nr
Match: TYK22932.1 (methyl-CpG-binding domain-containing protein 13 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 220 bits (560), Expect = 2.66e-65
Identity = 111/125 (88.80%), Postives = 117/125 (93.60%), Query Frame = 0


Query: 1   MRFNSRAEVFRYLKTAAICHPKSEESRTVKEPRNNVEVKKTIAKDLSTGWIGEIREMKTA 60
           MRFNSRAEVFRYLKTAAICHP+SEESRT+KEP NNVEVKKTIAKDL TGWIGEIRE KTA
Sbjct: 37  MRFNSRAEVFRYLKTAAICHPESEESRTIKEPGNNVEVKKTIAKDLPTGWIGEIRETKTA 96

Query: 61  NRIRRDSSYINPVNGHALRSIRDVHQYLTSGKVSRLAHKSRNQRDSTIDLQHDEISVSVL 120
           NRIRRDSSYI+P+NGHALRSIRDVH+YLTSGKVSRLAHKSRNQRDSTIDLQHDEIS  V+
Sbjct: 97  NRIRRDSSYIDPINGHALRSIRDVHRYLTSGKVSRLAHKSRNQRDSTIDLQHDEISSPVV 156

Query: 121 EVLEV 125
              EV
Sbjct: 157 SKKEV 161

[Close]

BLAST of IVF0003143 vs. NCBI nr
Match: KAA0033633.1 (methyl-CpG-binding domain-containing protein 13 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 211 bits (538), Expect = 5.58e-62
Identity = 111/136 (81.62%), Postives = 117/136 (86.03%), Query Frame = 0


Query: 1   MRFNSRAEVFRYLKTAAICHPKSEESRTVKEPRNNV-----------EVKKTIAKDLSTG 60
           MRFNSRAEVFRYLKTAAICHP+SEESRT+KEP NNV           EVKKTIAKDL TG
Sbjct: 37  MRFNSRAEVFRYLKTAAICHPESEESRTIKEPGNNVCQKNLPSTYNVEVKKTIAKDLPTG 96

Query: 61  WIGEIREMKTANRIRRDSSYINPVNGHALRSIRDVHQYLTSGKVSRLAHKSRNQRDSTID 120
           WIGEIRE KTANRIRRDSSYI+P+NGHALRSIRDVH+YLTSGKVSRLAHKSRNQRDSTID
Sbjct: 97  WIGEIRETKTANRIRRDSSYIDPINGHALRSIRDVHRYLTSGKVSRLAHKSRNQRDSTID 156

Query: 121 LQHDEISVSVLEVLEV 125
           LQHDEIS  V+   EV
Sbjct: 157 LQHDEISSPVVSKKEV 172

[Close]

BLAST of IVF0003143 vs. NCBI nr
Match: XP_011651144.1 (methyl-CpG-binding domain-containing protein 13 isoform X2 [Cucumis sativus])

HSP 1 Score: 210 bits (535), Expect = 5.67e-62
Identity = 107/125 (85.60%), Postives = 114/125 (91.20%), Query Frame = 0


Query: 1   MRFNSRAEVFRYLKTAAICHPKSEESRTVKEPRNNVEVKKTIAKDLSTGWIGEIREMKTA 60
           MRFNSRAEVFRYLKTAAICHP+SEESRTVKEP NNVEVKKTIAKDL TGWIGEIRE KTA
Sbjct: 1   MRFNSRAEVFRYLKTAAICHPESEESRTVKEPGNNVEVKKTIAKDLPTGWIGEIRETKTA 60

Query: 61  NRIRRDSSYINPVNGHALRSIRDVHQYLTSGKVSRLAHKSRNQRDSTIDLQHDEISVSVL 120
           NRIRRDSSYI+PVNG+ALRSIRDVH+YLTSGKVSRL HKSRNQRD+ I+ QHDEIS  V+
Sbjct: 61  NRIRRDSSYIDPVNGNALRSIRDVHRYLTSGKVSRLTHKSRNQRDNNIEFQHDEISSPVV 120

Query: 121 EVLEV 125
              EV
Sbjct: 121 SKKEV 125

The following BLAST results are available for this feature:

BLAST of IVF0003143 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0003143 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AYW3	2.2e-80	88.64	uncharacterized protein LOC103484069 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5D3DH45	4.5e-54	88.80	Methyl-CpG-binding domain-containing protein 13 isoform X1 OS=Cucumis melo var. ...	[more]
A0A5A7ST33	1.6e-51	81.62	Methyl-CpG-binding domain-containing protein 13 isoform X1 OS=Cucumis melo var. ...	[more]
A0A0A0L6H4	3.6e-51	85.60	MBD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G181990 PE=4 SV...	[more]
A0A1S3AYW9	6.1e-51	85.04	uncharacterized protein LOC103484069 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of IVF0003143 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008439209.1	5.21e-104	88.64	PREDICTED: uncharacterized protein LOC103484069 isoform X2 [Cucumis melo]	[more]
XP_008439211.1	5.06e-66	85.04	PREDICTED: uncharacterized protein LOC103484069 isoform X3 [Cucumis melo]	[more]
TYK22932.1	2.66e-65	88.80	methyl-CpG-binding domain-containing protein 13 isoform X1 [Cucumis melo var. ma...	[more]
KAA0033633.1	5.58e-62	81.62	methyl-CpG-binding domain-containing protein 13 isoform X1 [Cucumis melo var. ma...	[more]
XP_011651144.1	5.67e-62	85.60	methyl-CpG-binding domain-containing protein 13 isoform X2 [Cucumis sativus]	[more]

BLAST of IVF0003143 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001739	Methyl-CpG DNA binding	PFAM	PF01429	MBD	coord: 40..93 e-value: 1.5E-5 score: 24.6
IPR001739	Methyl-CpG DNA binding	PROSITE	PS50982	MBD	coord: 36..111 score: 11.641393
None	No IPR available	GENE3D	3.30.890.10		coord: 16..116 e-value: 1.8E-8 score: 36.3
None	No IPR available	PANTHER	PTHR34067:SF15	METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 13	coord: 2..133
IPR038945	Methyl-CpG-binding domain-containing protein 13-like	PANTHER	PTHR34067	OS04G0193200 PROTEIN	coord: 2..133
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 45..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0003143.1	IVF0003143.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding