IVF0003110 (gene) Melon (IVF77) v1

Overview


Name	IVF0003110
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Location	chr02: 10922866 .. 10923189 (-)
RNA-Seq Expression	IVF0003110
Synteny	IVF0003110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCGACAAAGATCAAAGATCGGGTAACAGAAGCGCGTTCAGAGACATTTGCTGATATAGGATCTAATGTGACAAACATGTTTAATGACGACGTTCCACTCGGTGATTCACATGATCAAGACATCCCGATGATGTATAGCCAAGGAGTGCATATGTCACCAGATGAGATCTTTGGAATACGTGCAGGTCAAGCAAGTGAGAGAAAAAAATGTTCAAGTGGAAGTAAGAGGAAACGAGGTAGTGAACATTATGAAACAGTAGAGATGATCAAGAGTGCATTAGAATTTGGAAATGATCAATTAAAGGCAATTGCAAATTAG

mRNA sequence

ATGTCTTCGACAAAGATCAAAGATCGGGTAACAGAAGCGCGTTCAGAGACATTTGCTGATATAGGATCTAATGTGACAAACATGTTTAATGACGACGTTCCACTCGGTGATTCACATGATCAAGACATCCCGATGATGTATAGCCAAGGAGTGCATATGTCACCAGATGAGATCTTTGGAATACGTGCAGGTCAAGCAAGTGAGAGAAAAAAATGTTCAAGTGGAAGTAAGAGGAAACGAGGTAGTGAACATTATGAAACAGTAGAGATGATCAAGAGTGCATTAGAATTTGGAAATGATCAATTAAAGGCAATTGCAAATTAG

Coding sequence (CDS)

ATGTCTTCGACAAAGATCAAAGATCGGGTAACAGAAGCGCGTTCAGAGACATTTGCTGATATAGGATCTAATGTGACAAACATGTTTAATGACGACGTTCCACTCGGTGATTCACATGATCAAGACATCCCGATGATGTATAGCCAAGGAGTGCATATGTCACCAGATGAGATCTTTGGAATACGTGCAGGTCAAGCAAGTGAGAGAAAAAAATGTTCAAGTGGAAGTAAGAGGAAACGAGGTAGTGAACATTATGAAACAGTAGAGATGATCAAGAGTGCATTAGAATTTGGAAATGATCAATTAAAGGCAATTGCAAATTAG

Protein sequence

MSSTKIKDRVTEARSETFADIGSNVTNMFNDDVPLGDSHDQDIPMMYSQGVHMSPDEIFGIRAGQASERKKCSSGSKRKRGSEHYETVEMIKSALEFGNDQLKAIAN

Homology

[Close]

BLAST of IVF0003110 vs. ExPASy TrEMBL
Match: A0A5D3DE65 (RING-H2 finger protein ATL66 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold543G00130 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.0e-51
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MSSTKIKDRVTEARSETFADIGSNVTNMFNDDVPLGDSHDQDIPMMYSQGVHMSPDEIFG 60
           MSSTKIKDRVTEARSETFADIGSNVTNMFNDDVPLGDSHDQDIPMMYSQGVHMSPDEIFG
Sbjct: 64  MSSTKIKDRVTEARSETFADIGSNVTNMFNDDVPLGDSHDQDIPMMYSQGVHMSPDEIFG 123

Query: 61  IRAGQASERKKCSSGSKRKRGSEHYETVEMIKSALEFGNDQLKAIAN 108
           IRAGQASERKKCSSGSKRKRGSEHYETVEMIKSALEFGNDQLKAIAN
Sbjct: 124 IRAGQASERKKCSSGSKRKRGSEHYETVEMIKSALEFGNDQLKAIAN 170

[Close]

BLAST of IVF0003110 vs. ExPASy TrEMBL
Match: A0A5A7T0R2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G002830 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 4.1e-48
Identity = 101/107 (94.39%), Postives = 104/107 (97.20%), Query Frame = 0


Query: 1   MSSTKIKDRVTEARSETFADIGSNVTNMFNDDVPLGDSHDQDIPMMYSQGVHMSPDEIFG 60
           MSSTKIKDRVT+ARSETFADIGSNV NMFNDDVPLGDSHDQDIPMMYSQG HMSPDEIFG
Sbjct: 64  MSSTKIKDRVTKARSETFADIGSNVPNMFNDDVPLGDSHDQDIPMMYSQGEHMSPDEIFG 123

Query: 61  IRAGQASERKKCSSGSKRKRGSEHYETVEMIKSALEFGNDQLKAIAN 108
           IRAGQASERKKCSSGSKRKRGSEH ETVEM++SALEFGNDQLKAIAN
Sbjct: 124 IRAGQASERKKCSSGSKRKRGSEHSETVEMMRSALEFGNDQLKAIAN 170

[Close]

BLAST of IVF0003110 vs. ExPASy TrEMBL
Match: A0A5A7SQU2 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold472G00070 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.2e-42
Identity = 89/101 (88.12%), Postives = 95/101 (94.06%), Query Frame = 0


Query: 7   KDRVTEARSETFADIGSNVTNMFNDDVPLGDSHDQDIPMMYSQGVHMSPDEIFGIRAGQA 66
           KDR T ARSETFAD+GSNV NMFN DVPL DSHDQDIPMMYSQGVHMSPDE+FGIRAGQA
Sbjct: 331 KDRATRARSETFADVGSNVPNMFNGDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAGQA 390

Query: 67  SERKKCSSGSKRKRGSEHYETVEMIKSALEFGNDQLKAIAN 108
           SERK CSSGSKRK+GS+HYETVE+IKSA+EFGNDQLKAIAN
Sbjct: 391 SERKNCSSGSKRKQGSKHYETVEVIKSAIEFGNDQLKAIAN 431

[Close]

BLAST of IVF0003110 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 6.6e-38
Identity = 80/101 (79.21%), Postives = 92/101 (91.09%), Query Frame = 0


Query: 7   KDRVTEARSETFADIGSNVTNMFNDDVPLGDSHDQDIPMMYSQGVHMSPDEIFGIRAGQA 66
           KDR T ARSETF ++GSNV+NMFND +PLGDSHD+DIP MYSQGVHMSPDE+FGIRAGQA
Sbjct: 138 KDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQA 197

Query: 67  SERKKCSSGSKRKRGSEHYETVEMIKSALEFGNDQLKAIAN 108
           SER+ CSS SKRKRGSE YETVE+I+S +EFGN+QLKAIA+
Sbjct: 198 SERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIAD 238

[Close]

BLAST of IVF0003110 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 6.6e-38
Identity = 80/101 (79.21%), Postives = 92/101 (91.09%), Query Frame = 0


Query: 7   KDRVTEARSETFADIGSNVTNMFNDDVPLGDSHDQDIPMMYSQGVHMSPDEIFGIRAGQA 66
           KDR T ARSETF ++GSNV+NMFND +PLGDSHD+DIP MYSQGVHMSPDE+FGIRAGQA
Sbjct: 138 KDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQA 197

Query: 67  SERKKCSSGSKRKRGSEHYETVEMIKSALEFGNDQLKAIAN 108
           SER+ CSS SKRKRGSE YETVE+I+S +EFGN+QLKAIA+
Sbjct: 198 SERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIAD 238

[Close]

BLAST of IVF0003110 vs. NCBI nr
Match: TYK21967.1 (RING-H2 finger protein ATL66 [Cucumis melo var. makuwa])

HSP 1 Score: 214 bits (544), Expect = 6.08e-69
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MSSTKIKDRVTEARSETFADIGSNVTNMFNDDVPLGDSHDQDIPMMYSQGVHMSPDEIFG 60
           MSSTKIKDRVTEARSETFADIGSNVTNMFNDDVPLGDSHDQDIPMMYSQGVHMSPDEIFG
Sbjct: 64  MSSTKIKDRVTEARSETFADIGSNVTNMFNDDVPLGDSHDQDIPMMYSQGVHMSPDEIFG 123

Query: 61  IRAGQASERKKCSSGSKRKRGSEHYETVEMIKSALEFGNDQLKAIAN 107
           IRAGQASERKKCSSGSKRKRGSEHYETVEMIKSALEFGNDQLKAIAN
Sbjct: 124 IRAGQASERKKCSSGSKRKRGSEHYETVEMIKSALEFGNDQLKAIAN 170

[Close]

BLAST of IVF0003110 vs. NCBI nr
Match: KAA0035181.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 202 bits (513), Expect = 4.58e-64
Identity = 101/107 (94.39%), Postives = 104/107 (97.20%), Query Frame = 0


Query: 1   MSSTKIKDRVTEARSETFADIGSNVTNMFNDDVPLGDSHDQDIPMMYSQGVHMSPDEIFG 60
           MSSTKIKDRVT+ARSETFADIGSNV NMFNDDVPLGDSHDQDIPMMYSQG HMSPDEIFG
Sbjct: 64  MSSTKIKDRVTKARSETFADIGSNVPNMFNDDVPLGDSHDQDIPMMYSQGEHMSPDEIFG 123

Query: 61  IRAGQASERKKCSSGSKRKRGSEHYETVEMIKSALEFGNDQLKAIAN 107
           IRAGQASERKKCSSGSKRKRGSEH ETVEM++SALEFGNDQLKAIAN
Sbjct: 124 IRAGQASERKKCSSGSKRKRGSEHSETVEMMRSALEFGNDQLKAIAN 170

[Close]

BLAST of IVF0003110 vs. NCBI nr
Match: KAA0033290.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 184 bits (466), Expect = 2.45e-53
Identity = 89/101 (88.12%), Postives = 95/101 (94.06%), Query Frame = 0


Query: 7   KDRVTEARSETFADIGSNVTNMFNDDVPLGDSHDQDIPMMYSQGVHMSPDEIFGIRAGQA 66
           KDR T ARSETFAD+GSNV NMFN DVPL DSHDQDIPMMYSQGVHMSPDE+FGIRAGQA
Sbjct: 331 KDRATRARSETFADVGSNVPNMFNGDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAGQA 390

Query: 67  SERKKCSSGSKRKRGSEHYETVEMIKSALEFGNDQLKAIAN 107
           SERK CSSGSKRK+GS+HYETVE+IKSA+EFGNDQLKAIAN
Sbjct: 391 SERKNCSSGSKRKQGSKHYETVEVIKSAIEFGNDQLKAIAN 431

[Close]

BLAST of IVF0003110 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 168 bits (425), Expect = 4.08e-49
Identity = 80/101 (79.21%), Postives = 92/101 (91.09%), Query Frame = 0


Query: 7   KDRVTEARSETFADIGSNVTNMFNDDVPLGDSHDQDIPMMYSQGVHMSPDEIFGIRAGQA 66
           KDR T ARSETF ++GSNV+NMFND +PLGDSHD+DIP MYSQGVHMSPDE+FGIRAGQA
Sbjct: 138 KDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQA 197

Query: 67  SERKKCSSGSKRKRGSEHYETVEMIKSALEFGNDQLKAIAN 107
           SER+ CSS SKRKRGSE YETVE+I+S +EFGN+QLKAIA+
Sbjct: 198 SERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIAD 238

[Close]

BLAST of IVF0003110 vs. NCBI nr
Match: KAA0042340.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK15465.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 162 bits (409), Expect = 6.62e-48
Identity = 78/101 (77.23%), Postives = 91/101 (90.10%), Query Frame = 0


Query: 7   KDRVTEARSETFADIGSNVTNMFNDDVPLGDSHDQDIPMMYSQGVHMSPDEIFGIRAGQA 66
           KD+ TEARSETFAD+GSN+ NMFND VPLGDSH +DIP MYSQGV MS DE+FG RAGQA
Sbjct: 37  KDQATEARSETFADVGSNIPNMFNDGVPLGDSHHEDIPTMYSQGVLMSLDEMFGTRAGQA 96

Query: 67  SERKKCSSGSKRKRGSEHYETVEMIKSALEFGNDQLKAIAN 107
           SER+ CSS SKRK+GS+HYETVE+I+SA++FGNDQLKAIA+
Sbjct: 97  SERRNCSSRSKRKQGSQHYETVEVIRSAMKFGNDQLKAIAD 137

The following BLAST results are available for this feature:

BLAST of IVF0003110 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0003110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DE65	1.0e-51	100.00	RING-H2 finger protein ATL66 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7T0R2	4.1e-48	94.39	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7SQU2	1.2e-42	88.12	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7U0H7	6.6e-38	79.21	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B4L3	6.6e-38	79.21	uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=...	[more]

BLAST of IVF0003110 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK21967.1	6.08e-69	100.00	RING-H2 finger protein ATL66 [Cucumis melo var. makuwa]	[more]
KAA0035181.1	4.58e-64	94.39	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0033290.1	2.45e-53	88.12	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nucleas...	[more]
XP_008441954.1	4.08e-49	79.21	PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret...	[more]
KAA0042340.1	6.62e-48	77.23	retrotransposon protein [Cucumis melo var. makuwa] >TYK15465.1 retrotransposon p...	[more]

BLAST of IVF0003110 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0003110.1	IVF0003110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding