IVF0003081 (gene) Melon (IVF77) v1

Overview
NameIVF0003081
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPhosphopantothenoylcysteine decarboxylase subunit VHS3-like
Locationchr05: 10018565 .. 10018873 (-)
RNA-Seq ExpressionIVF0003081
SyntenyIVF0003081
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGCGAGACTATACCAACATATCAACTGAACACATGGAAGAGGATGATTCTATCGACTTTAACCACATTAAACATGAAGATGATGATTCTATCGACTTTAACCACATTAAACATGAAGATGATGATTCTATCGACTCCAACCACATTGAAGATGAAGATGGTGATCCTATCGACTGCAACTGCATTGAAGATGAAGATGATGATCCTATCGACTGCGACCACATTGAAGATGAAGATGATGATCGTCTTGGTTACGCCGCATTGAAGATAGAGATGATGATCATTTTGGTTGCGTTGCATTGA

mRNA sequence

ATGGAGAAGCGAGACTATACCAACATATCAACTGAACACATGGAAGAGGATGATTCTATCGACTTTAACCACATTAAACATGAAGATGATGATTCTATCGACTTTAACCACATTAAACATGAAGATGATGATTCTATCGACTCCAACCACATTGAAGATGAAGATGGTGATCCTATCGACTGCAACTGCATTGAAGATGAAGATGATGATCCTATCGACTGCGACCACATTGAAGATGAAGATGATGATCGTCTTGGTTACGCCGCATTGAAGATAGAGATGATGATCATTTTGGTTGCGTTGCATTGA

Coding sequence (CDS)

ATGGAGAAGCGAGACTATACCAACATATCAACTGAACACATGGAAGAGGATGATTCTATCGACTTTAACCACATTAAACATGAAGATGATGATTCTATCGACTTTAACCACATTAAACATGAAGATGATGATTCTATCGACTCCAACCACATTGAAGATGAAGATGGTGATCCTATCGACTGCAACTGCATTGAAGATGAAGATGATGATCCTATCGACTGCGACCACATTGAAGATGAAGATGATGATCGTCTTGGTTACGCCGCATTGAAGATAGAGATGATGATCATTTTGGTTGCGTTGCATTGA

Protein sequence

MEKRDYTNISTEHMEEDDSIDFNHIKHEDDDSIDFNHIKHEDDDSIDSNHIEDEDGDPIDCNCIEDEDDDPIDCDHIEDEDDDRLGYAALKIEMMIILVALH
Homology
BLAST of IVF0003081 vs. ExPASy TrEMBL
Match: A0A5D3BPS5 (Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00260 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.9e-47
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0

Query: 1   MEKRDYTNISTEHMEEDDSIDFNHIKHEDDDSIDFNHIKHEDDDSIDSNHIEDEDGDPID 60
           MEKRDYTNISTEHMEEDDSIDFNHIKHEDDDSIDFNHIKHEDDDSIDSNHIEDEDGDPID
Sbjct: 1   MEKRDYTNISTEHMEEDDSIDFNHIKHEDDDSIDFNHIKHEDDDSIDSNHIEDEDGDPID 60

Query: 61  CNCIEDEDDDPIDCDHIEDEDDDRLGYAALKIEMMIILVALH 103
           CNCIEDEDDDPIDCDHIEDEDDDRLGYAALKIEMMIILVALH
Sbjct: 61  CNCIEDEDDDPIDCDHIEDEDDDRLGYAALKIEMMIILVALH 102

BLAST of IVF0003081 vs. ExPASy TrEMBL
Match: A0A1S4E1H3 (phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo OX=3656 GN=LOC107991530 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 4.0e-45
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0

Query: 1  MEKRDYTNISTEHMEEDDSIDFNHIKHEDDDSIDFNHIKHEDDDSIDSNHIEDEDGDPID 60
          MEKRDYTNISTEHMEEDDSIDFNHIKHEDDDSIDFNHIKHEDDDSIDSNHIEDEDGDPID
Sbjct: 1  MEKRDYTNISTEHMEEDDSIDFNHIKHEDDDSIDFNHIKHEDDDSIDSNHIEDEDGDPID 60

Query: 61 CNCIEDEDDDPIDCDHIEDEDDDRLGYAALKIEMMIIL 99
          CNCIEDEDDDPIDCDHIEDEDDDRLGYAALKIEMMIIL
Sbjct: 61 CNCIEDEDDDPIDCDHIEDEDDDRLGYAALKIEMMIIL 98

BLAST of IVF0003081 vs. ExPASy TrEMBL
Match: A0A5D3DQ88 (Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold436G00280 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.8e-14
Identity = 58/95 (61.05%), Postives = 67/95 (70.53%), Query Frame = 0

Query: 16  EDDSIDFNHIKHEDDDSIDFNHIKHEDDDSID-----------SNHIEDEDGDPIDCNCI 75
           +DD IDFN IK EDDDSIDF +I+ EDDDSID             +IEDED D IDC+ I
Sbjct: 8   DDDPIDFNRIKDEDDDSIDF-YIEDEDDDSIDFYIENEDDDFIDFYIEDEDDDSIDCDHI 67

Query: 76  EDEDDDPIDCDHIEDEDDDRLGYAALKIEMMIILV 100
           ED+DDDPI  D  EDEDDDRLG  ALK++MMI+ V
Sbjct: 68  EDKDDDPIGWDRFEDEDDDRLGCVALKMKMMIVSV 101

BLAST of IVF0003081 vs. ExPASy TrEMBL
Match: A0A1S3C4K1 (phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo OX=3656 GN=LOC103496781 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.8e-14
Identity = 58/95 (61.05%), Postives = 67/95 (70.53%), Query Frame = 0

Query: 16  EDDSIDFNHIKHEDDDSIDFNHIKHEDDDSID-----------SNHIEDEDGDPIDCNCI 75
           +DD IDFN IK EDDDSIDF +I+ EDDDSID             +IEDED D IDC+ I
Sbjct: 8   DDDPIDFNRIKDEDDDSIDF-YIEDEDDDSIDFYIENEDDDFIDFYIEDEDDDSIDCDHI 67

Query: 76  EDEDDDPIDCDHIEDEDDDRLGYAALKIEMMIILV 100
           ED+DDDPI  D  EDEDDDRLG  ALK++MMI+ V
Sbjct: 68  EDKDDDPIGWDRFEDEDDDRLGCVALKMKMMIVSV 101

BLAST of IVF0003081 vs. ExPASy TrEMBL
Match: A0A5A7T1P1 (Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold85G00660 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.2e-10
Identity = 51/106 (48.11%), Postives = 66/106 (62.26%), Query Frame = 0

Query: 12  EHMEEDDS-----IDFNHIKHEDDDSIDFNHIKHEDDDSIDSNHIEDED----------- 71
           +H++EDD+     IDFN +K E DDSID + I+ EDDD I  +  ED+D           
Sbjct: 28  QHLKEDDAIDDDPIDFNLVKDEADDSIDCDCIEDEDDDPISCHRFEDDDRLGCVTLKMEM 87

Query: 72  ----GDPIDCNCIEDEDDDPIDCDHIEDEDDDRLGYAALKIEMMII 98
                DPI  NC++DEDDDPI CD  EDE+D+ LG A LKI+MMI+
Sbjct: 88  LLEEDDPIHFNCVKDEDDDPIGCDRFEDENDNCLGCATLKIKMMIV 133

BLAST of IVF0003081 vs. NCBI nr
Match: KAA0039603.1 (phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. makuwa] >TYK01703.1 phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. makuwa])

HSP 1 Score: 199 bits (507), Expect = 2.36e-64
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0

Query: 1   MEKRDYTNISTEHMEEDDSIDFNHIKHEDDDSIDFNHIKHEDDDSIDSNHIEDEDGDPID 60
           MEKRDYTNISTEHMEEDDSIDFNHIKHEDDDSIDFNHIKHEDDDSIDSNHIEDEDGDPID
Sbjct: 1   MEKRDYTNISTEHMEEDDSIDFNHIKHEDDDSIDFNHIKHEDDDSIDSNHIEDEDGDPID 60

Query: 61  CNCIEDEDDDPIDCDHIEDEDDDRLGYAALKIEMMIILVALH 102
           CNCIEDEDDDPIDCDHIEDEDDDRLGYAALKIEMMIILVALH
Sbjct: 61  CNCIEDEDDDPIDCDHIEDEDDDRLGYAALKIEMMIILVALH 102

BLAST of IVF0003081 vs. NCBI nr
Match: XP_016902073.1 (PREDICTED: phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo])

HSP 1 Score: 192 bits (487), Expect = 3.07e-60
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0

Query: 1  MEKRDYTNISTEHMEEDDSIDFNHIKHEDDDSIDFNHIKHEDDDSIDSNHIEDEDGDPID 60
          MEKRDYTNISTEHMEEDDSIDFNHIKHEDDDSIDFNHIKHEDDDSIDSNHIEDEDGDPID
Sbjct: 1  MEKRDYTNISTEHMEEDDSIDFNHIKHEDDDSIDFNHIKHEDDDSIDSNHIEDEDGDPID 60

Query: 61 CNCIEDEDDDPIDCDHIEDEDDDRLGYAALKIEMMIIL 98
          CNCIEDEDDDPIDCDHIEDEDDDRLGYAALKIEMMIIL
Sbjct: 61 CNCIEDEDDDPIDCDHIEDEDDDRLGYAALKIEMMIIL 98

BLAST of IVF0003081 vs. NCBI nr
Match: XP_008456992.1 (PREDICTED: phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo] >TYK25823.1 phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 6.48e-20
Identity = 58/95 (61.05%), Postives = 67/95 (70.53%), Query Frame = 0

Query: 16  EDDSIDFNHIKHEDDDSIDFNHIKHEDDDSID-----------SNHIEDEDGDPIDCNCI 75
           +DD IDFN IK EDDDSIDF +I+ EDDDSID             +IEDED D IDC+ I
Sbjct: 8   DDDPIDFNRIKDEDDDSIDF-YIEDEDDDSIDFYIENEDDDFIDFYIEDEDDDSIDCDHI 67

Query: 76  EDEDDDPIDCDHIEDEDDDRLGYAALKIEMMIILV 99
           ED+DDDPI  D  EDEDDDRLG  ALK++MMI+ V
Sbjct: 68  EDKDDDPIGWDRFEDEDDDRLGCVALKMKMMIVSV 101

BLAST of IVF0003081 vs. NCBI nr
Match: KAA0050091.1 (prostatic spermine-binding protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 1.82e-15
Identity = 40/59 (67.80%), Postives = 46/59 (77.97%), Query Frame = 0

Query: 44  DSIDSNHIEDEDGDPIDCNCIEDEDDDPIDCDHIEDEDDDRLGYAALKIEMMIILVALH 102
           D I+ N I+DED D +DC+ IEDEDDDPIDCD  EDEDDD LG A LK+EMMI+  ALH
Sbjct: 5   DPINFNLIKDEDDDSVDCDRIEDEDDDPIDCDRFEDEDDDCLGRATLKMEMMIVSTALH 63

BLAST of IVF0003081 vs. NCBI nr
Match: KAA0037362.1 (phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. makuwa] >TYJ97544.1 phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 6.20e-15
Identity = 52/114 (45.61%), Postives = 64/114 (56.14%), Query Frame = 0

Query: 12  EHMEEDDSIDFNHIKHEDDDSIDFNHIKHEDDDSIDSNHIEDEDGDPIDC---------- 71
           +H++EDD+ID        DD IDFN +K E DDSID + IEDED DPI C          
Sbjct: 28  QHLKEDDAID--------DDPIDFNLVKDEADDSIDCDCIEDEDDDPISCHRFEDDDRLG 87

Query: 72  ------------------NCIEDEDDDPIDCDHIEDEDDDRLGYAALKIEMMII 97
                             NC++DEDDDPI CD  EDE+D+ LG A LKI+MMI+
Sbjct: 88  CVTLKMEMLLEEDDPIHFNCVKDEDDDPIGCDRFEDENDNCLGCATLKIKMMIV 133

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BPS51.9e-47100.00Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var.... [more]
A0A1S4E1H34.0e-45100.00phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo OX=3... [more]
A0A5D3DQ884.8e-1461.05Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var.... [more]
A0A1S3C4K14.8e-1461.05phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo OX=3... [more]
A0A5A7T1P14.2e-1048.11Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var.... [more]
Match NameE-valueIdentityDescription
KAA0039603.12.36e-64100.00phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. m... [more]
XP_016902073.13.07e-60100.00PREDICTED: phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis ... [more]
XP_008456992.16.48e-2061.05PREDICTED: phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis ... [more]
KAA0050091.11.82e-1567.80prostatic spermine-binding protein-like [Cucumis melo var. makuwa][more]
KAA0037362.16.20e-1545.61phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. m... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0003081.1IVF0003081.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding