IVF0003077 (gene) Melon (IVF77) v1

Overview
NameIVF0003077
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr07: 234852 .. 235310 (+)
RNA-Seq ExpressionIVF0003077
SyntenyIVF0003077
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTATGGAAGGTAACAAAAATTGGATTTAAGGATTTACTAAAACTATTTTTAATTAGAAATGGAGCAGTTGCAGTTGCAGCTGCAGAATTATTCCATTTTCAAAAAAAAAAAAAAACTTTATGGATCTGATCTGACCTCTTTAAATCTTCAGGGAAGAGGAAAGAGAAAAATTGGCATTGTGATGAAGAGAGAGATGAGGAGAGGGAAGCATTTGGTGCTGAAAAATGCGATCCAAAATGGAAATAAACAAATCACATTGGCTGTTGGAATGTCCACCATCCACATGATGATACTCATACTGTTCCCCCTTTTTCAATTCATCGCCTGTACTGTAAAGTTATGCCATCTCCGCTGAAAATCGACGACAAGATTTGAAGTCAATATTCACAACAGAAACGGAATTATCAGAGCGGCCGATTTCGAATTCAGGGGAATCTCCTTTGTTTACAACTTGA

mRNA sequence

ATGGCTATGGAAGGAAAGAGAAAAATTGGCATTGTGATGAAGAGAGAGATGAGGAGAGGGAAGCATTTGGTGCTGAAAAATGCGATCCAAAATGGAAATAAACAAATCACATTGGCTGTTGGAATGTCCACCATCCACATGATGATACTCATACTGTTCCCCCTTTTTCAATTCATCGCCTATTTGAAGTCAATATTCACAACAGAAACGGAATTATCAGAGCGGCCGATTTCGAATTCAGGGGAATCTCCTTTGTTTACAACTTGA

Coding sequence (CDS)

ATGGCTATGGAAGGAAAGAGAAAAATTGGCATTGTGATGAAGAGAGAGATGAGGAGAGGGAAGCATTTGGTGCTGAAAAATGCGATCCAAAATGGAAATAAACAAATCACATTGGCTGTTGGAATGTCCACCATCCACATGATGATACTCATACTGTTCCCCCTTTTTCAATTCATCGCCTATTTGAAGTCAATATTCACAACAGAAACGGAATTATCAGAGCGGCCGATTTCGAATTCAGGGGAATCTCCTTTGTTTACAACTTGA

Protein sequence

MAMEGKRKIGIVMKREMRRGKHLVLKNAIQNGNKQITLAVGMSTIHMMILILFPLFQFIAYLKSIFTTETELSERPISNSGESPLFTT
Homology
[Close]
BLAST of IVF0003077 vs. ExPASy TrEMBL
Match: A0A0A0L4N5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664350 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.4e-25
Identity = 77/106 (72.64%), Postives = 79/106 (74.53%), Query Frame = 0 

Query: 1   MAMEGKRK---IGIVMKREMRRGKHLVLKNAIQNGNKQITLAVGMSTIHMMILILFPLFQ 60
           M MEGKRK        +R+  RGKHLVLKNAIQNGNKQITLAVGMSTIHMMILILFPLFQ
Sbjct: 1   MGMEGKRKEKNWQCDEERDEGRGKHLVLKNAIQNGNKQITLAVGMSTIHMMILILFPLFQ 60

Query: 61  FIA---------------YLKSIFTTETELSERPISNSGESPLFTT 89
           FIA                LKSIFTTETELSERPISNSGESPLFTT
Sbjct: 61  FIALYCKVMPSPLKIDDKILKSIFTTETELSERPISNSGESPLFTT 106

[Close]
BLAST of IVF0003077 vs. NCBI nr
Match: KGN55527.1 (hypothetical protein Csa_012641 [Cucumis sativus])

HSP 1 Score: 122 bits (305), Expect = 9.51e-34
Identity = 77/106 (72.64%), Postives = 79/106 (74.53%), Query Frame = 0 

Query: 1   MAMEGKRKIGIVM---KREMRRGKHLVLKNAIQNGNKQITLAVGMSTIHMMILILFPLFQ 60
           M MEGKRK        +R+  RGKHLVLKNAIQNGNKQITLAVGMSTIHMMILILFPLFQ
Sbjct: 1   MGMEGKRKEKNWQCDEERDEGRGKHLVLKNAIQNGNKQITLAVGMSTIHMMILILFPLFQ 60

Query: 61  FIAY---------------LKSIFTTETELSERPISNSGESPLFTT 88
           FIA                LKSIFTTETELSERPISNSGESPLFTT
Sbjct: 61  FIALYCKVMPSPLKIDDKILKSIFTTETELSERPISNSGESPLFTT 106

The following BLAST results are available for this feature:
BLAST of IVF0003077 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0003077 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4N51.4e-2572.64Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664350 PE=4 SV=1[more]
BLAST of IVF0003077 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN55527.19.51e-3472.64hypothetical protein Csa_012641 [Cucumis sativus][more]
BLAST of IVF0003077 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0003077.1IVF0003077.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane