IVF0003063 (gene) Melon (IVF77) v1

Overview


Name	IVF0003063
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	RNA-directed DNA polymerase
Location	chr04: 19986267 .. 19987142 (+)
RNA-Seq Expression	IVF0003063
Synteny	IVF0003063

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACACTTTTTGCCTTACAAGAAAACATTCAATGCTAATGCGATGTCGAAATTTTTTTTTCCTGAGGTTGTGCAATTACGTGACATTCCAAAATCTATTACTTCAGATTGAGATGTGAAATTTGTTAGTCATTTTTTAGGATCTTATGGAGGTATTTTAACACATCTCTAAAGTTTAGTAGTTCTTACCACCCGCAAACTGATGGGCAAACAAAAGTTATCAATAGAATTATGGGAAATATGCTTCATAGTTTGGTTGGAGAAAATCCTAAACAGAGGCATTTATTTTTGCCACAAGTAGAATTTTCCTACAATAACATGCCTAGTAAATCTACTAAATTCAGTATGATCAAATAGTTTATACCAAAGTGTCTAACAACACATTTGATTTAATTCCTAGTTACAAGGAAACGTGCAGAAAAGCTAACACAATATCAAAAGAAATTGTTAATAAGCAACATCTTCAACAAGCTGACATAGAATATAAAAAGCATGCTGACCAAAAACAACGAGATGAAAAATTTCAGGTTGGAGATCTTGTTATGGCTTACCTTCAACGAGAGAGACATCCAGTTGGTTCGTATTCCAAGTTGAAACCACGAAAAATTGGTCCTTACGAAATCTTGCTAAAAATTGGTGCTAATGCTTACGTTTTGGACTTACCTCTGTCAATCTACACGTCATCTACCTTTAATATTTCAGATCTGACTATGTACCACACACTAGATGTTGCACGACGATTGAAGAATTTGAAAATGAAGAGTTTGGCATGAAATCGGACCATGCAGACTCGTTAATCAGGAACATCGTGAGAAAGGATGCTAATCAAACCGATTTGCTTCCAGTCGCCATGTTGAACAAAGAAGATGATTGA

mRNA sequence

ATGGCACACTTTTTGCCTTACAAGAAAACATTCAATGCTAATGCGATGTCGAAATTTTTTTTTCCTGAGGTTGTGCAATTACTTGGTTCGTATTCCAAGTTGAAACCACGAAAAATTGGTCCTTACGAAATCTTGCTAAAAATTGGTGCTAATGCTTACGTTTTGGACTTACCTCTGTCAATCTACACGTCATCTACCTTTAATATTTCAGATCTGACTATGTACCACACACTAGATTTTGGCATGAAATCGGACCATGCAGACTCGTTAATCAGGAACATCGTGAGAAAGGATGCTAATCAAACCGATTTGCTTCCAGTCGCCATGTTGAACAAAGAAGATGATTGA

Coding sequence (CDS)

ATGGCACACTTTTTGCCTTACAAGAAAACATTCAATGCTAATGCGATGTCGAAATTTTTTTTTCCTGAGGTTGTGCAATTACTTGGTTCGTATTCCAAGTTGAAACCACGAAAAATTGGTCCTTACGAAATCTTGCTAAAAATTGGTGCTAATGCTTACGTTTTGGACTTACCTCTGTCAATCTACACGTCATCTACCTTTAATATTTCAGATCTGACTATGTACCACACACTAGATTTTGGCATGAAATCGGACCATGCAGACTCGTTAATCAGGAACATCGTGAGAAAGGATGCTAATCAAACCGATTTGCTTCCAGTCGCCATGTTGAACAAAGAAGATGATTGA

Protein sequence

MAHFLPYKKTFNANAMSKFFFPEVVQLLGSYSKLKPRKIGPYEILLKIGANAYVLDLPLSIYTSSTFNISDLTMYHTLDFGMKSDHADSLIRNIVRKDANQTDLLPVAMLNKEDD

Homology

[Close]

BLAST of IVF0003063 vs. ExPASy TrEMBL
Match: A0A5D3CWR3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2047G00060 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.2e-24
Identity = 68/100 (68.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 28  LGSYSKLKPRKIGPYEILLKIGANAYVLDLPLSIYTSSTFNISDLTMYHTLD-------- 87
           L SYSKLKPRKIGPY+IL KI ANAYVLDL   IYTSSTFN+SDLTMYH  D        
Sbjct: 11  LSSYSKLKPRKIGPYKILRKIDANAYVLDLLPLIYTSSTFNVSDLTMYHLPDAAPTIEES 70

Query: 88  ----FGMKSDHADSLIRNIVRKDANQTDLLPVAMLNKEDD 116
               FGMKSDH DSLI NIV  D +QT+L PVAMLN E D
Sbjct: 71  EDEKFGMKSDHTDSLIGNIVTTDVDQTNLFPVAMLNNEVD 110

[Close]

BLAST of IVF0003063 vs. ExPASy TrEMBL
Match: A0A0A0LKH8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G162120 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.8e-17
Identity = 61/114 (53.51%), Postives = 73/114 (64.04%), Query Frame = 0


Query: 13  ANAMSKFFFPEVVQLLGSYSKLKPRKIGPYEILLKIGANAYVLDLPLSIYTSSTFNISDL 72
           AN MSK      +  +   SKLKP+++G   IL KIG NAYVLDLP SIYTSSTFN+ +L
Sbjct: 5   ANTMSK-----AIVNISDRSKLKPQRLG---ILRKIGGNAYVLDLPSSIYTSSTFNVLNL 64

Query: 73  TMYHTLD------------FGMKSDHADSLIRNIVRKDANQTDLLPVAMLNKED 115
           TMYH  D            F  KSD A+S + NI+ KDAN T+LLPVAML +ED
Sbjct: 65  TMYHPRDVAPTIKKFENEKFDTKSDCANSSMGNILTKDANHTELLPVAMLIRED 110

[Close]

BLAST of IVF0003063 vs. ExPASy TrEMBL
Match: A5AJG1 (Chromo domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_030849 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 6.2e-10
Identity = 35/74 (47.30%), Postives = 51/74 (68.92%), Query Frame = 0


Query: 1   MAHFLPYKKTFNANAMSKFFFPEVVQLLGSYSKLKPRKIGPYEILLKIGANAYVLDLPLS 60
           M +F+   KT +   ++K FF E+VQL  +Y KL  + +GPY++L KI +NAYVLDLP +
Sbjct: 368 MMYFISCSKTLDVVHVAKLFFKEIVQLHDTYKKLHSKNVGPYKVLKKINSNAYVLDLPEN 427

Query: 61  IYTSSTFNISDLTM 75
           +  S+ FNI DLT+
Sbjct: 428 MGISNIFNIKDLTL 441

[Close]

BLAST of IVF0003063 vs. ExPASy TrEMBL
Match: A0A2I0VL32 (Integrase catalytic domain-containing protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca008024 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 6.2e-10
Identity = 39/84 (46.43%), Postives = 52/84 (61.90%), Query Frame = 0


Query: 5   LPYKKTFNANAMSKFFFPEVVQLL---------GSYSKLKPRKIGPYEILLKIGANAYVL 64
           L YK+  + +   + F P  + +L         G+YSKL P+KIGP+ IL KI  NAY++
Sbjct: 166 LKYKQAADEHRRQQLFNPGDLVMLRVRRERFTSGTYSKLSPKKIGPFPILRKINDNAYII 225

Query: 65  DLPLSIYTSSTFNISDLTMYHTLD 80
           DLP SI TSSTFN+SD+  YH  D
Sbjct: 226 DLPASIQTSSTFNVSDIYRYHPPD 249

[Close]

BLAST of IVF0003063 vs. ExPASy TrEMBL
Match: A0A2I0VWB5 (RNA-directed DNA polymerase OS=Dendrobium catenatum OX=906689 GN=MA16_Dca013733 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.1e-09
Identity = 40/82 (48.78%), Postives = 50/82 (60.98%), Query Frame = 0


Query: 7   YKKTFNANAMSKFFFPEVVQLL---------GSYSKLKPRKIGPYEILLKIGANAYVLDL 66
           YK+  +A    K F P  + +L         G+YSKL PRKIGP+ IL KI  NAYV+DL
Sbjct: 736 YKELADARRRHKVFSPGDLVMLRMRRERFPTGTYSKLSPRKIGPFSILRKINDNAYVIDL 795

Query: 67  PLSIYTSSTFNISDLTMYHTLD 80
           P  I TSSTFN++D+  YH  D
Sbjct: 796 PAHIQTSSTFNVADIHEYHPPD 817

[Close]

BLAST of IVF0003063 vs. NCBI nr
Match: KAA0039087.1 (putative protein phosphatase 2C 25 [Cucumis melo var. makuwa] >TYK14876.1 putative protein phosphatase 2C 25 [Cucumis melo var. makuwa])

HSP 1 Score: 121 bits (304), Expect = 4.41e-33
Identity = 68/100 (68.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 28  LGSYSKLKPRKIGPYEILLKIGANAYVLDLPLSIYTSSTFNISDLTMYHTLD-------- 87
           L SYSKLKPRKIGPY+IL KI ANAYVLDL   IYTSSTFN+SDLTMYH  D        
Sbjct: 11  LSSYSKLKPRKIGPYKILRKIDANAYVLDLLPLIYTSSTFNVSDLTMYHLPDAAPTIEES 70

Query: 88  ----FGMKSDHADSLIRNIVRKDANQTDLLPVAMLNKEDD 115
               FGMKSDH DSLI NIV  D +QT+L PVAMLN E D
Sbjct: 71  EDEKFGMKSDHTDSLIGNIVTTDVDQTNLFPVAMLNNEVD 110

[Close]

BLAST of IVF0003063 vs. NCBI nr
Match: KGN61529.1 (hypothetical protein Csa_006553 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 2.48e-23
Identity = 61/114 (53.51%), Postives = 73/114 (64.04%), Query Frame = 0


Query: 13  ANAMSKFFFPEVVQLLGSYSKLKPRKIGPYEILLKIGANAYVLDLPLSIYTSSTFNISDL 72
           AN MSK      +  +   SKLKP+++G   IL KIG NAYVLDLP SIYTSSTFN+ +L
Sbjct: 5   ANTMSK-----AIVNISDRSKLKPQRLG---ILRKIGGNAYVLDLPSSIYTSSTFNVLNL 64

Query: 73  TMYHTLD------------FGMKSDHADSLIRNIVRKDANQTDLLPVAMLNKED 114
           TMYH  D            F  KSD A+S + NI+ KDAN T+LLPVAML +ED
Sbjct: 65  TMYHPRDVAPTIKKFENEKFDTKSDCANSSMGNILTKDANHTELLPVAMLIRED 110

[Close]

BLAST of IVF0003063 vs. NCBI nr
Match: KAF7151872.1 (hypothetical protein RHSIM_Rhsim02G0058400 [Rhododendron simsii])

HSP 1 Score: 70.9 bits (172), Expect = 4.89e-13
Identity = 36/81 (44.44%), Postives = 49/81 (60.49%), Query Frame = 0


Query: 7   YKKTFNANAMSKFFFPEVVQLLGSYSKLKPRKIGPYEILLKIGANAYVLDLPLSIYTSST 66
           Y+K F        F  +    +G+Y+KLKPRK GPYE+L KIG  AYV+DLP S+  S  
Sbjct: 32  YEKLFKEGDFVMVFLRKERFPVGTYNKLKPRKYGPYEVLKKIGEKAYVIDLPDSMKISKV 91

Query: 67  FNISDLTMYHTLDFGMKSDHA 87
           FN++DL+ YH  +   +  HA
Sbjct: 92  FNVADLSEYHAEELLKREGHA 112

[Close]

BLAST of IVF0003063 vs. NCBI nr
Match: PKU64118.1 (hypothetical protein MA16_Dca008024 [Dendrobium catenatum])

HSP 1 Score: 72.0 bits (175), Expect = 2.90e-12
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 29  GSYSKLKPRKIGPYEILLKIGANAYVLDLPLSIYTSSTFNISDLTMYHTLD 79
           G+YSKL P+KIGP+ IL KI  NAY++DLP SI TSSTFN+SD+  YH  D
Sbjct: 199 GTYSKLSPKKIGPFPILRKINDNAYIIDLPASIQTSSTFNVSDIYRYHPPD 249

[Close]

BLAST of IVF0003063 vs. NCBI nr
Match: CAN64612.1 (hypothetical protein VITISV_030849 [Vitis vinifera])

HSP 1 Score: 72.0 bits (175), Expect = 7.27e-12
Identity = 35/74 (47.30%), Postives = 51/74 (68.92%), Query Frame = 0


Query: 1   MAHFLPYKKTFNANAMSKFFFPEVVQLLGSYSKLKPRKIGPYEILLKIGANAYVLDLPLS 60
           M +F+   KT +   ++K FF E+VQL  +Y KL  + +GPY++L KI +NAYVLDLP +
Sbjct: 368 MMYFISCSKTLDVVHVAKLFFKEIVQLHDTYKKLHSKNVGPYKVLKKINSNAYVLDLPEN 427

Query: 61  IYTSSTFNISDLTM 74
           +  S+ FNI DLT+
Sbjct: 428 MGISNIFNIKDLTL 441

The following BLAST results are available for this feature:

BLAST of IVF0003063 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0003063 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CWR3	1.2e-24	68.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LKH8	1.8e-17	53.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G162120 PE=4 SV=1	[more]
A5AJG1	6.2e-10	47.30	Chromo domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_030849 PE=...	[more]
A0A2I0VL32	6.2e-10	46.43	Integrase catalytic domain-containing protein OS=Dendrobium catenatum OX=906689 ...	[more]
A0A2I0VWB5	1.1e-09	48.78	RNA-directed DNA polymerase OS=Dendrobium catenatum OX=906689 GN=MA16_Dca013733 ...	[more]

BLAST of IVF0003063 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039087.1	4.41e-33	68.00	putative protein phosphatase 2C 25 [Cucumis melo var. makuwa] >TYK14876.1 putati...	[more]
KGN61529.1	2.48e-23	53.51	hypothetical protein Csa_006553 [Cucumis sativus]	[more]
KAF7151872.1	4.89e-13	44.44	hypothetical protein RHSIM_Rhsim02G0058400 [Rhododendron simsii]	[more]
PKU64118.1	2.90e-12	64.71	hypothetical protein MA16_Dca008024 [Dendrobium catenatum]	[more]
CAN64612.1	7.27e-12	47.30	hypothetical protein VITISV_030849 [Vitis vinifera]	[more]

BLAST of IVF0003063 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0003063.1	IVF0003063.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity