IVF0003063 (gene) Melon (IVF77) v1

Overview
NameIVF0003063
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRNA-directed DNA polymerase
Locationchr04: 19986267 .. 19987142 (+)
RNA-Seq ExpressionIVF0003063
SyntenyIVF0003063
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACACTTTTTGCCTTACAAGAAAACATTCAATGCTAATGCGATGTCGAAATTTTTTTTTCCTGAGGTTGTGCAATTACGTGACATTCCAAAATCTATTACTTCAGATTGAGATGTGAAATTTGTTAGTCATTTTTTAGGATCTTATGGAGGTATTTTAACACATCTCTAAAGTTTAGTAGTTCTTACCACCCGCAAACTGATGGGCAAACAAAAGTTATCAATAGAATTATGGGAAATATGCTTCATAGTTTGGTTGGAGAAAATCCTAAACAGAGGCATTTATTTTTGCCACAAGTAGAATTTTCCTACAATAACATGCCTAGTAAATCTACTAAATTCAGTATGATCAAATAGTTTATACCAAAGTGTCTAACAACACATTTGATTTAATTCCTAGTTACAAGGAAACGTGCAGAAAAGCTAACACAATATCAAAAGAAATTGTTAATAAGCAACATCTTCAACAAGCTGACATAGAATATAAAAAGCATGCTGACCAAAAACAACGAGATGAAAAATTTCAGGTTGGAGATCTTGTTATGGCTTACCTTCAACGAGAGAGACATCCAGTTGGTTCGTATTCCAAGTTGAAACCACGAAAAATTGGTCCTTACGAAATCTTGCTAAAAATTGGTGCTAATGCTTACGTTTTGGACTTACCTCTGTCAATCTACACGTCATCTACCTTTAATATTTCAGATCTGACTATGTACCACACACTAGATGTTGCACGACGATTGAAGAATTTGAAAATGAAGAGTTTGGCATGAAATCGGACCATGCAGACTCGTTAATCAGGAACATCGTGAGAAAGGATGCTAATCAAACCGATTTGCTTCCAGTCGCCATGTTGAACAAAGAAGATGATTGA

mRNA sequence

ATGGCACACTTTTTGCCTTACAAGAAAACATTCAATGCTAATGCGATGTCGAAATTTTTTTTTCCTGAGGTTGTGCAATTACTTGGTTCGTATTCCAAGTTGAAACCACGAAAAATTGGTCCTTACGAAATCTTGCTAAAAATTGGTGCTAATGCTTACGTTTTGGACTTACCTCTGTCAATCTACACGTCATCTACCTTTAATATTTCAGATCTGACTATGTACCACACACTAGATTTTGGCATGAAATCGGACCATGCAGACTCGTTAATCAGGAACATCGTGAGAAAGGATGCTAATCAAACCGATTTGCTTCCAGTCGCCATGTTGAACAAAGAAGATGATTGA

Coding sequence (CDS)

ATGGCACACTTTTTGCCTTACAAGAAAACATTCAATGCTAATGCGATGTCGAAATTTTTTTTTCCTGAGGTTGTGCAATTACTTGGTTCGTATTCCAAGTTGAAACCACGAAAAATTGGTCCTTACGAAATCTTGCTAAAAATTGGTGCTAATGCTTACGTTTTGGACTTACCTCTGTCAATCTACACGTCATCTACCTTTAATATTTCAGATCTGACTATGTACCACACACTAGATTTTGGCATGAAATCGGACCATGCAGACTCGTTAATCAGGAACATCGTGAGAAAGGATGCTAATCAAACCGATTTGCTTCCAGTCGCCATGTTGAACAAAGAAGATGATTGA

Protein sequence

MAHFLPYKKTFNANAMSKFFFPEVVQLLGSYSKLKPRKIGPYEILLKIGANAYVLDLPLSIYTSSTFNISDLTMYHTLDFGMKSDHADSLIRNIVRKDANQTDLLPVAMLNKEDD
Homology
[Close]
BLAST of IVF0003063 vs. ExPASy TrEMBL
Match: A0A5D3CWR3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2047G00060 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.2e-24
Identity = 68/100 (68.00%), Postives = 72/100 (72.00%), Query Frame = 0 

Query: 28  LGSYSKLKPRKIGPYEILLKIGANAYVLDLPLSIYTSSTFNISDLTMYHTLD-------- 87
           L SYSKLKPRKIGPY+IL KI ANAYVLDL   IYTSSTFN+SDLTMYH  D        
Sbjct: 11  LSSYSKLKPRKIGPYKILRKIDANAYVLDLLPLIYTSSTFNVSDLTMYHLPDAAPTIEES 70

Query: 88  ----FGMKSDHADSLIRNIVRKDANQTDLLPVAMLNKEDD 116
               FGMKSDH DSLI NIV  D +QT+L PVAMLN E D
Sbjct: 71  EDEKFGMKSDHTDSLIGNIVTTDVDQTNLFPVAMLNNEVD 110

[Close]
BLAST of IVF0003063 vs. ExPASy TrEMBL
Match: A0A0A0LKH8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G162120 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.8e-17
Identity = 61/114 (53.51%), Postives = 73/114 (64.04%), Query Frame = 0 

Query: 13  ANAMSKFFFPEVVQLLGSYSKLKPRKIGPYEILLKIGANAYVLDLPLSIYTSSTFNISDL 72
           AN MSK      +  +   SKLKP+++G   IL KIG NAYVLDLP SIYTSSTFN+ +L
Sbjct: 5   ANTMSK-----AIVNISDRSKLKPQRLG---ILRKIGGNAYVLDLPSSIYTSSTFNVLNL 64

Query: 73  TMYHTLD------------FGMKSDHADSLIRNIVRKDANQTDLLPVAMLNKED 115
           TMYH  D            F  KSD A+S + NI+ KDAN T+LLPVAML +ED
Sbjct: 65  TMYHPRDVAPTIKKFENEKFDTKSDCANSSMGNILTKDANHTELLPVAMLIRED 110

[Close]
BLAST of IVF0003063 vs. ExPASy TrEMBL
Match: A5AJG1 (Chromo domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_030849 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 6.2e-10
Identity = 35/74 (47.30%), Postives = 51/74 (68.92%), Query Frame = 0 

Query: 1   MAHFLPYKKTFNANAMSKFFFPEVVQLLGSYSKLKPRKIGPYEILLKIGANAYVLDLPLS 60
           M +F+   KT +   ++K FF E+VQL  +Y KL  + +GPY++L KI +NAYVLDLP +
Sbjct: 368 MMYFISCSKTLDVVHVAKLFFKEIVQLHDTYKKLHSKNVGPYKVLKKINSNAYVLDLPEN 427

Query: 61  IYTSSTFNISDLTM 75
           +  S+ FNI DLT+
Sbjct: 428 MGISNIFNIKDLTL 441

[Close]
BLAST of IVF0003063 vs. ExPASy TrEMBL
Match: A0A2I0VL32 (Integrase catalytic domain-containing protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca008024 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 6.2e-10
Identity = 39/84 (46.43%), Postives = 52/84 (61.90%), Query Frame = 0 

Query: 5   LPYKKTFNANAMSKFFFPEVVQLL---------GSYSKLKPRKIGPYEILLKIGANAYVL 64
           L YK+  + +   + F P  + +L         G+YSKL P+KIGP+ IL KI  NAY++
Sbjct: 166 LKYKQAADEHRRQQLFNPGDLVMLRVRRERFTSGTYSKLSPKKIGPFPILRKINDNAYII 225

Query: 65  DLPLSIYTSSTFNISDLTMYHTLD 80
           DLP SI TSSTFN+SD+  YH  D
Sbjct: 226 DLPASIQTSSTFNVSDIYRYHPPD 249

[Close]
BLAST of IVF0003063 vs. ExPASy TrEMBL
Match: A0A2I0VWB5 (RNA-directed DNA polymerase OS=Dendrobium catenatum OX=906689 GN=MA16_Dca013733 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.1e-09
Identity = 40/82 (48.78%), Postives = 50/82 (60.98%), Query Frame = 0 

Query: 7   YKKTFNANAMSKFFFPEVVQLL---------GSYSKLKPRKIGPYEILLKIGANAYVLDL 66
           YK+  +A    K F P  + +L         G+YSKL PRKIGP+ IL KI  NAYV+DL
Sbjct: 736 YKELADARRRHKVFSPGDLVMLRMRRERFPTGTYSKLSPRKIGPFSILRKINDNAYVIDL 795

Query: 67  PLSIYTSSTFNISDLTMYHTLD 80
           P  I TSSTFN++D+  YH  D
Sbjct: 796 PAHIQTSSTFNVADIHEYHPPD 817

[Close]
BLAST of IVF0003063 vs. NCBI nr
Match: KAA0039087.1 (putative protein phosphatase 2C 25 [Cucumis melo var. makuwa] >TYK14876.1 putative protein phosphatase 2C 25 [Cucumis melo var. makuwa])

HSP 1 Score: 121 bits (304), Expect = 4.41e-33
Identity = 68/100 (68.00%), Postives = 72/100 (72.00%), Query Frame = 0 

Query: 28  LGSYSKLKPRKIGPYEILLKIGANAYVLDLPLSIYTSSTFNISDLTMYHTLD-------- 87
           L SYSKLKPRKIGPY+IL KI ANAYVLDL   IYTSSTFN+SDLTMYH  D        
Sbjct: 11  LSSYSKLKPRKIGPYKILRKIDANAYVLDLLPLIYTSSTFNVSDLTMYHLPDAAPTIEES 70

Query: 88  ----FGMKSDHADSLIRNIVRKDANQTDLLPVAMLNKEDD 115
               FGMKSDH DSLI NIV  D +QT+L PVAMLN E D
Sbjct: 71  EDEKFGMKSDHTDSLIGNIVTTDVDQTNLFPVAMLNNEVD 110

[Close]
BLAST of IVF0003063 vs. NCBI nr
Match: KGN61529.1 (hypothetical protein Csa_006553 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 2.48e-23
Identity = 61/114 (53.51%), Postives = 73/114 (64.04%), Query Frame = 0 

Query: 13  ANAMSKFFFPEVVQLLGSYSKLKPRKIGPYEILLKIGANAYVLDLPLSIYTSSTFNISDL 72
           AN MSK      +  +   SKLKP+++G   IL KIG NAYVLDLP SIYTSSTFN+ +L
Sbjct: 5   ANTMSK-----AIVNISDRSKLKPQRLG---ILRKIGGNAYVLDLPSSIYTSSTFNVLNL 64

Query: 73  TMYHTLD------------FGMKSDHADSLIRNIVRKDANQTDLLPVAMLNKED 114
           TMYH  D            F  KSD A+S + NI+ KDAN T+LLPVAML +ED
Sbjct: 65  TMYHPRDVAPTIKKFENEKFDTKSDCANSSMGNILTKDANHTELLPVAMLIRED 110

[Close]
BLAST of IVF0003063 vs. NCBI nr
Match: KAF7151872.1 (hypothetical protein RHSIM_Rhsim02G0058400 [Rhododendron simsii])

HSP 1 Score: 70.9 bits (172), Expect = 4.89e-13
Identity = 36/81 (44.44%), Postives = 49/81 (60.49%), Query Frame = 0 

Query: 7   YKKTFNANAMSKFFFPEVVQLLGSYSKLKPRKIGPYEILLKIGANAYVLDLPLSIYTSST 66
           Y+K F        F  +    +G+Y+KLKPRK GPYE+L KIG  AYV+DLP S+  S  
Sbjct: 32  YEKLFKEGDFVMVFLRKERFPVGTYNKLKPRKYGPYEVLKKIGEKAYVIDLPDSMKISKV 91

Query: 67  FNISDLTMYHTLDFGMKSDHA 87
           FN++DL+ YH  +   +  HA
Sbjct: 92  FNVADLSEYHAEELLKREGHA 112

[Close]
BLAST of IVF0003063 vs. NCBI nr
Match: PKU64118.1 (hypothetical protein MA16_Dca008024 [Dendrobium catenatum])

HSP 1 Score: 72.0 bits (175), Expect = 2.90e-12
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 0 

Query: 29  GSYSKLKPRKIGPYEILLKIGANAYVLDLPLSIYTSSTFNISDLTMYHTLD 79
           G+YSKL P+KIGP+ IL KI  NAY++DLP SI TSSTFN+SD+  YH  D
Sbjct: 199 GTYSKLSPKKIGPFPILRKINDNAYIIDLPASIQTSSTFNVSDIYRYHPPD 249

[Close]
BLAST of IVF0003063 vs. NCBI nr
Match: CAN64612.1 (hypothetical protein VITISV_030849 [Vitis vinifera])

HSP 1 Score: 72.0 bits (175), Expect = 7.27e-12
Identity = 35/74 (47.30%), Postives = 51/74 (68.92%), Query Frame = 0 

Query: 1   MAHFLPYKKTFNANAMSKFFFPEVVQLLGSYSKLKPRKIGPYEILLKIGANAYVLDLPLS 60
           M +F+   KT +   ++K FF E+VQL  +Y KL  + +GPY++L KI +NAYVLDLP +
Sbjct: 368 MMYFISCSKTLDVVHVAKLFFKEIVQLHDTYKKLHSKNVGPYKVLKKINSNAYVLDLPEN 427

Query: 61  IYTSSTFNISDLTM 74
           +  S+ FNI DLT+
Sbjct: 428 MGISNIFNIKDLTL 441

The following BLAST results are available for this feature:
BLAST of IVF0003063 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0003063 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CWR31.2e-2468.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LKH81.8e-1753.51Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G162120 PE=4 SV=1[more]
A5AJG16.2e-1047.30Chromo domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_030849 PE=... [more]
A0A2I0VL326.2e-1046.43Integrase catalytic domain-containing protein OS=Dendrobium catenatum OX=906689 ... [more]
A0A2I0VWB51.1e-0948.78RNA-directed DNA polymerase OS=Dendrobium catenatum OX=906689 GN=MA16_Dca013733 ... [more]
BLAST of IVF0003063 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0039087.14.41e-3368.00putative protein phosphatase 2C 25 [Cucumis melo var. makuwa] >TYK14876.1 putati... [more]
KGN61529.12.48e-2353.51hypothetical protein Csa_006553 [Cucumis sativus][more]
KAF7151872.14.89e-1344.44hypothetical protein RHSIM_Rhsim02G0058400 [Rhododendron simsii][more]
PKU64118.12.90e-1264.71hypothetical protein MA16_Dca008024 [Dendrobium catenatum][more]
CAN64612.17.27e-1247.30hypothetical protein VITISV_030849 [Vitis vinifera][more]
BLAST of IVF0003063 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0003063.1IVF0003063.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003964 RNA-directed DNA polymerase activity