IVF0003033 (gene) Melon (IVF77) v1

Overview


Name	IVF0003033
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Cyclin-dependent kinases regulatory subunit
Location	chr11: 25690586 .. 25691548 (-)
RNA-Seq Expression	IVF0003033
Synteny	IVF0003033

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCAGATTCAGTACTCTGAGAAGTACTTCGACGACATTTATGAGTACAGGTATTGTGTTCTTACTCTCAGTTTCCAACTCCATTGTTACTCGCAGTCTTGAAGAATTGTTTGGATTTGGAAGCGTTCGTTCTTTGTCTTCAATGTCTATATGGATTGATTGGTGCAGGCACGTGGTTCTCCCACCCGAAGTCGCAAAGTTGCTTCCTAAGAATCGTCTGCTCTCGGAAGTAAGCGATTTTGTTTTCTTAGTTTCAAATTTATGTGTTTCGATTTTGATACGAACGGAAGTGTTCTCTTATTGATTAGGAAGAAACTTAGTTCAGTAGTTGAATTCTTATATCAGGTTTAGGTATCACTCTTGAGACCTTAAGAAATAGTTATTATTCCGTGGACAGTTTTTTCCCCTATTTTTAATCTTTTATATTTTCATATGGTCTTGATATTCTCTCTTTGATTTGGCTGATGGTTGCATGAAGTTGTAACCATGCTTATGAGTATTTCGCATAGAAGTTGTATGAAAAAGGATTGAGAATCCAGGGCTTATGACTTATTCATTAGACTAGACCCCTTCTGGTTTTCCAATCTTGCAATTCTCTCTATGCAATTAGTGAGCAATGGACGCTTCTGTTGGGCATAAGCATAGGAGCATTATCATACCATCGATGTCTTATGAGTTTCTTGGCTTTCGTCTTGAACTCAAGTTATCATTGTTCGAAACAAAAGGATGCTTTTCAAATCTGTTTTACTACTCGTTTCATGGAAGCATTTTGTTATACTTTTAGCCCTTTAATCTTATGTGCAGAATGAATGGCGTGCAATTGGAGTTCAGCAGAGTCGTGGGTGGGTGCACTATGCTATTCATCGTCCCGAACCGCATATCATGCTATTCAGGAGGCCCCTGAACTACCAACAGCAGCAGGAGAATCGCACTCAACAAAATGCGCTTGCTGCTAAATGA

mRNA sequence

ATGGGTCAGATTCAGTACTCTGAGAAGTACTTCGACGACATTTATGAGTACAGGCACGTGGTTCTCCCACCCGAAGTCGCAAAGTTGCTTCCTAAGAATCGTCTGCTCTCGGAAAATGAATGGCGTGCAATTGGAGTTCAGCAGAGTCGTGGGTGGGTGCACTATGCTATTCATCGTCCCGAACCGCATATCATGCTATTCAGGAGGCCCCTGAACTACCAACAGCAGCAGGAGAATCGCACTCAACAAAATGCGCTTGCTGCTAAATGA

Coding sequence (CDS)

ATGGGTCAGATTCAGTACTCTGAGAAGTACTTCGACGACATTTATGAGTACAGGCACGTGGTTCTCCCACCCGAAGTCGCAAAGTTGCTTCCTAAGAATCGTCTGCTCTCGGAAAATGAATGGCGTGCAATTGGAGTTCAGCAGAGTCGTGGGTGGGTGCACTATGCTATTCATCGTCCCGAACCGCATATCATGCTATTCAGGAGGCCCCTGAACTACCAACAGCAGCAGGAGAATCGCACTCAACAAAATGCGCTTGCTGCTAAATGA

Protein sequence

MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENRTQQNALAAK

Homology

[Close]

BLAST of IVF0003033 vs. ExPASy Swiss-Prot
Match: O23249 (Cyclin-dependent kinases regulatory subunit 1 OS=Arabidopsis thaliana OX=3702 GN=CKS1 PE=1 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 3.9e-41
Identity = 77/82 (93.90%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD +EYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYA+HRP
Sbjct: 1  MGQIQYSEKYFDDTFEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAVHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENRTQ 83
          EPHIMLFRRPLNYQQQQEN+ Q
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQ 82

[Close]

BLAST of IVF0003033 vs. ExPASy Swiss-Prot
Match: A2XCH8 (Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. indica OX=39946 GN=CKS1 PE=2 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 4.3e-40
Identity = 76/78 (97.44%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQE 79
          EPHIMLFRRPLN+QQQQE
Sbjct: 61 EPHIMLFRRPLNFQQQQE 78

[Close]

BLAST of IVF0003033 vs. ExPASy Swiss-Prot
Match: Q6PS57 (Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CKS1 PE=2 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 4.3e-40
Identity = 76/78 (97.44%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQE 79
          EPHIMLFRRPLN+QQQQE
Sbjct: 61 EPHIMLFRRPLNFQQQQE 78

[Close]

BLAST of IVF0003033 vs. ExPASy Swiss-Prot
Match: Q9SJJ5 (Cyclin-dependent kinases regulatory subunit 2 OS=Arabidopsis thaliana OX=3702 GN=CKS2 PE=1 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.2e-37
Identity = 70/78 (89.74%), Postives = 76/78 (97.44%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYS+KYFDD +EYRHVVLPPEVAKLLPKNR+LSE+EWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSDKYFDDTFEYRHVVLPPEVAKLLPKNRILSESEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQE 79
          EPHIMLFRRPLNYQQ+ +
Sbjct: 61 EPHIMLFRRPLNYQQEHQ 78

[Close]

BLAST of IVF0003033 vs. ExPASy Swiss-Prot
Match: P55933 (Probable cyclin-dependent kinases regulatory subunit OS=Physarum polycephalum OX=5791 PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 2.9e-28
Identity = 53/66 (80.30%), Postives = 62/66 (93.94%), Query Frame = 0


Query: 4  IQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPH 63
          IQYSEKY+DD +EYRHV+LPP+VAK +PKNRLLSE EWR +GVQQS+GWVHYA+HRPEPH
Sbjct: 6  IQYSEKYYDDKFEYRHVILPPDVAKEIPKNRLLSEGEWRGLGVQQSQGWVHYALHRPEPH 65

Query: 64 IMLFRR 70
          I+LFRR
Sbjct: 66 ILLFRR 71

[Close]

BLAST of IVF0003033 vs. ExPASy TrEMBL
Match: A0A5D3DKQ6 (Cyclin-dependent kinases regulatory subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1754G00180 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.8e-44
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENRTQQNALAAK 90
          EPHIMLFRRPLNYQQQQENRTQQNALAAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENRTQQNALAAK 89

[Close]

BLAST of IVF0003033 vs. ExPASy TrEMBL
Match: A0A1S3CNU7 (Cyclin-dependent kinases regulatory subunit OS=Cucumis melo OX=3656 GN=LOC103503041 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.8e-44
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENRTQQNALAAK 90
          EPHIMLFRRPLNYQQQQENRTQQNALAAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENRTQQNALAAK 89

[Close]

BLAST of IVF0003033 vs. ExPASy TrEMBL
Match: A0A2I4GKZ4 (Cyclin-dependent kinases regulatory subunit OS=Juglans regia OX=51240 GN=LOC109016561 PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 6.2e-42
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENRTQQNALA 88
          EPHIMLFRRPLNYQQQQEN+TQQN LA
Sbjct: 61 EPHIMLFRRPLNYQQQQENQTQQNVLA 87

[Close]

BLAST of IVF0003033 vs. ExPASy TrEMBL
Match: A0A6J1K8L9 (Cyclin-dependent kinases regulatory subunit OS=Cucurbita maxima OX=3661 GN=LOC111491633 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.1e-41
Identity = 84/89 (94.38%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVLPP+VAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENRTQQNALAAK 90
          EPHIMLFRRPLNYQQQQEN  QQN LAAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 89

[Close]

BLAST of IVF0003033 vs. ExPASy TrEMBL
Match: A0A6J1H322 (Cyclin-dependent kinases regulatory subunit OS=Cucurbita moschata OX=3662 GN=LOC111459235 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.1e-41
Identity = 84/89 (94.38%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVLPP+VAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENRTQQNALAAK 90
          EPHIMLFRRPLNYQQQQEN  QQN LAAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 89

[Close]

BLAST of IVF0003033 vs. NCBI nr
Match: XP_008465423.1 (PREDICTED: cyclin-dependent kinases regulatory subunit 1-like [Cucumis melo] >KAA0037300.1 cyclin-dependent kinases regulatory subunit 1-like [Cucumis melo var. makuwa] >TYK24184.1 cyclin-dependent kinases regulatory subunit 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 185 bits (470), Expect = 4.06e-59
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENRTQQNALAAK 89
          EPHIMLFRRPLNYQQQQENRTQQNALAAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENRTQQNALAAK 89

[Close]

BLAST of IVF0003033 vs. NCBI nr
Match: XP_038902899.1 (cyclin-dependent kinases regulatory subunit 1-like [Benincasa hispida])

HSP 1 Score: 179 bits (454), Expect = 1.12e-56
Identity = 86/89 (96.63%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENRTQQNALAAK 89
          EPHIMLFRRPLNYQQQQEN  QQN LAAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 89

[Close]

BLAST of IVF0003033 vs. NCBI nr
Match: XP_018854502.1 (cyclin-dependent kinases regulatory subunit 1-like [Juglans regia] >XP_040991781.1 cyclin-dependent kinases regulatory subunit 1-like [Juglans microcarpa x Juglans regia] >XP_042955613.1 cyclin-dependent kinases regulatory subunit 1 [Carya illinoinensis] >XP_042955614.1 cyclin-dependent kinases regulatory subunit 1 [Carya illinoinensis] >KAG2674589.1 hypothetical protein I3760_13G143300 [Carya illinoinensis] >KAG6632237.1 hypothetical protein CIPAW_13G144800 [Carya illinoinensis] >KAG6682493.1 hypothetical protein I3842_13G144400 [Carya illinoinensis] >KAG7950678.1 hypothetical protein I3843_13G127600 [Carya illinoinensis])

HSP 1 Score: 177 bits (449), Expect = 6.31e-56
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENRTQQNALA 87
          EPHIMLFRRPLNYQQQQEN+TQQN LA
Sbjct: 61 EPHIMLFRRPLNYQQQQENQTQQNVLA 87

[Close]

BLAST of IVF0003033 vs. NCBI nr
Match: XP_028756892.1 (cyclin-dependent kinases regulatory subunit 1 [Prosopis alba] >XP_028788395.1 cyclin-dependent kinases regulatory subunit 1 [Prosopis alba])

HSP 1 Score: 177 bits (448), Expect = 9.24e-56
Identity = 84/89 (94.38%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENRTQQNALAAK 89
          EPHIMLFRRPLNYQQQQEN+ QQN +AAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQNMVAAK 89

[Close]

BLAST of IVF0003033 vs. NCBI nr
Match: XP_011657043.1 (LOW QUALITY PROTEIN: cyclin-dependent kinases regulatory subunit 1 [Cucumis sativus])

HSP 1 Score: 177 bits (448), Expect = 9.24e-56
Identity = 85/89 (95.51%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQI YSEKYFDDIYEYRHVVLPPEVAKL PKNRLLSENEWRAIGVQQSRGWVHYA H P
Sbjct: 1  MGQIXYSEKYFDDIYEYRHVVLPPEVAKLFPKNRLLSENEWRAIGVQQSRGWVHYAFHCP 60

Query: 61 EPHIMLFRRPLNYQQQQENRTQQNALAAK 89
          EPHIMLFRRPLNYQQQQENRTQQNALAAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENRTQQNALAAK 89

[Close]

BLAST of IVF0003033 vs. TAIR 10
Match: AT2G27960.1 (cyclin-dependent kinase-subunit 1 )

HSP 1 Score: 168.3 bits (425), Expect = 2.8e-42
Identity = 77/82 (93.90%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD +EYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYA+HRP
Sbjct: 1  MGQIQYSEKYFDDTFEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAVHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENRTQ 83
          EPHIMLFRRPLNYQQQQEN+ Q
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQ 82

[Close]

BLAST of IVF0003033 vs. TAIR 10
Match: AT2G27970.1 (CDK-subunit 2 )

HSP 1 Score: 156.8 bits (395), Expect = 8.3e-39
Identity = 70/78 (89.74%), Postives = 76/78 (97.44%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYS+KYFDD +EYRHVVLPPEVAKLLPKNR+LSE+EWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSDKYFDDTFEYRHVVLPPEVAKLLPKNRILSESEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQE 79
          EPHIMLFRRPLNYQQ+ +
Sbjct: 61 EPHIMLFRRPLNYQQEHQ 78

The following BLAST results are available for this feature:

BLAST of IVF0003033 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23249	3.9e-41	93.90	Cyclin-dependent kinases regulatory subunit 1 OS=Arabidopsis thaliana OX=3702 GN...	[more]
A2XCH8	4.3e-40	97.44	Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. indica OX=3...	[more]
Q6PS57	4.3e-40	97.44	Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. japonica OX...	[more]
Q9SJJ5	1.2e-37	89.74	Cyclin-dependent kinases regulatory subunit 2 OS=Arabidopsis thaliana OX=3702 GN...	[more]
P55933	2.9e-28	80.30	Probable cyclin-dependent kinases regulatory subunit OS=Physarum polycephalum OX...	[more]

BLAST of IVF0003033 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DKQ6	1.8e-44	100.00	Cyclin-dependent kinases regulatory subunit OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3CNU7	1.8e-44	100.00	Cyclin-dependent kinases regulatory subunit OS=Cucumis melo OX=3656 GN=LOC103503...	[more]
A0A2I4GKZ4	6.2e-42	96.55	Cyclin-dependent kinases regulatory subunit OS=Juglans regia OX=51240 GN=LOC1090...	[more]
A0A6J1K8L9	1.1e-41	94.38	Cyclin-dependent kinases regulatory subunit OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1H322	1.1e-41	94.38	Cyclin-dependent kinases regulatory subunit OS=Cucurbita moschata OX=3662 GN=LOC...	[more]

BLAST of IVF0003033 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008465423.1	4.06e-59	100.00	PREDICTED: cyclin-dependent kinases regulatory subunit 1-like [Cucumis melo] >KA...	[more]
XP_038902899.1	1.12e-56	96.63	cyclin-dependent kinases regulatory subunit 1-like [Benincasa hispida]	[more]
XP_018854502.1	6.31e-56	96.55	cyclin-dependent kinases regulatory subunit 1-like [Juglans regia] >XP_040991781...	[more]
XP_028756892.1	9.24e-56	94.38	cyclin-dependent kinases regulatory subunit 1 [Prosopis alba] >XP_028788395.1 cy...	[more]
XP_011657043.1	9.24e-56	95.51	LOW QUALITY PROTEIN: cyclin-dependent kinases regulatory subunit 1 [Cucumis sati...	[more]

BLAST of IVF0003033 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27960.1	2.8e-42	93.90	cyclin-dependent kinase-subunit 1	[more]
AT2G27970.1	8.3e-39	89.74	CDK-subunit 2	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000789	Cyclin-dependent kinase, regulatory subunit	PRINTS	PR00296	CYCLINKINASE	coord: 40..54 score: 75.9 coord: 3..17 score: 64.1 coord: 18..32 score: 62.05 coord: 55..69 score: 76.41
IPR000789	Cyclin-dependent kinase, regulatory subunit	SMART	SM01084	CKS_2	coord: 3..72 e-value: 1.9E-46 score: 170.3
IPR000789	Cyclin-dependent kinase, regulatory subunit	PFAM	PF01111	CKS	coord: 4..70 e-value: 2.3E-35 score: 120.7
IPR000789	Cyclin-dependent kinase, regulatory subunit	PROSITE	PS00944	CKS_1	coord: 6..24
IPR036858	Cyclin-dependent kinase, regulatory subunit superfamily	GENE3D	3.30.170.10		coord: 1..84 e-value: 9.7E-40 score: 136.9
IPR036858	Cyclin-dependent kinase, regulatory subunit superfamily	SUPERFAMILY	55637	Cell cycle regulatory proteins	coord: 1..83
None	No IPR available	PANTHER	PTHR23415:SF29	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT	coord: 1..87
None	No IPR available	PANTHER	PTHR23415	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7	coord: 1..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0003033.2	IVF0003033.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051301	cell division
biological_process	GO:0045737	positive regulation of cyclin-dependent protein serine/threonine kinase activity
biological_process	GO:0007346	regulation of mitotic cell cycle
cellular_component	GO:0000307	cyclin-dependent protein kinase holoenzyme complex
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0061575	cyclin-dependent protein serine/threonine kinase activator activity
molecular_function	GO:0042393	histone binding
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0019901	protein kinase binding
molecular_function	GO:0043130	ubiquitin binding
molecular_function	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity