IVF0003032 (gene) Melon (IVF77) v1

Overview


Name	IVF0003032
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	TPD1 protein homolog 1-like
Location	chr04: 3303616 .. 3304320 (+)
RNA-Seq Expression	IVF0003032
Synteny	IVF0003032

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGCCTCCATCAAGTTTCTTTGTGTACTCTTGTTCTTTTGTCTCCTCTCCAAAGGTATATATTATTTCTGCTTAAAATATATACAGTACTTTAAACACACTTGAAAGTACCTCTAGTCTTAGATAATGAATTAACCTAAATTATTGTATGTTATATGATACTTATTTCATCATGTTATAGTTAGGCCTTGTGAATTTGAAATGCATGTAATAAGTTTTATCGTCCAAATATGAAAGTTGAGCATCTAAAATTAAACAAGAAATGGTTAAAACTAACGTAACGAGTCCCATTCAATGAGTACTTGTCGAGTCGAACATATATATATATATATAACTGGTTTGGATGATGATGAGGAGGAGGATGATTATATTATATTATTATGATTTTCAGGAAATTGTCAATGTGTGTTGAATGACATTGCAATAAGTCAAACAACAACTGGATCTATAGTGAAAGGGAAGCAAGTATGGAAAGCCACAATTACAAACAATTGCATTTGTTCACAATCAAGTTTGAAATTGGATTGCAATGGATTCAACACAGTTCAAGAAGTTGATCCATCCATATTAGCAGTTGCTGGGGCAGTGTGTTTGGTTAATGGTGGTCAACCAATCTTTGATTCTACACCCATCTCCTTCACTTATGCTTGGGACAATGCCTTCCCTTTCAAGCCCCTCTCCTCTCAAATCAATTGTTCTTAA

mRNA sequence

ATGGTTGCCTCCATCAAGTTTCTTTGTGTACTCTTGTTCTTTTGTCTCCTCTCCAAAGGAAATTGTCAATGTGTGTTGAATGACATTGCAATAAGTCAAACAACAACTGGATCTATAGTGAAAGGGAAGCAAGTATGGAAAGCCACAATTACAAACAATTGCATTTGTTCACAATCAAGTTTGAAATTGGATTGCAATGGATTCAACACAGTTCAAGAAGTTGATCCATCCATATTAGCAGTTGCTGGGGCAGTGTGTTTGGTTAATGGTGGTCAACCAATCTTTGATTCTACACCCATCTCCTTCACTTATGCTTGGGACAATGCCTTCCCTTTCAAGCCCCTCTCCTCTCAAATCAATTGTTCTTAA

Coding sequence (CDS)

ATGGTTGCCTCCATCAAGTTTCTTTGTGTACTCTTGTTCTTTTGTCTCCTCTCCAAAGGAAATTGTCAATGTGTGTTGAATGACATTGCAATAAGTCAAACAACAACTGGATCTATAGTGAAAGGGAAGCAAGTATGGAAAGCCACAATTACAAACAATTGCATTTGTTCACAATCAAGTTTGAAATTGGATTGCAATGGATTCAACACAGTTCAAGAAGTTGATCCATCCATATTAGCAGTTGCTGGGGCAGTGTGTTTGGTTAATGGTGGTCAACCAATCTTTGATTCTACACCCATCTCCTTCACTTATGCTTGGGACAATGCCTTCCCTTTCAAGCCCCTCTCCTCTCAAATCAATTGTTCTTAA

Protein sequence

MVASIKFLCVLLFFCLLSKGNCQCVLNDIAISQTTTGSIVKGKQVWKATITNNCICSQSSLKLDCNGFNTVQEVDPSILAVAGAVCLVNGGQPIFDSTPISFTYAWDNAFPFKPLSSQINCS

Homology

[Close]

BLAST of IVF0003032 vs. ExPASy TrEMBL
Match: A0A0A0LEA1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G875970 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 5.5e-57
Identity = 111/122 (90.98%), Postives = 117/122 (95.90%), Query Frame = 0


Query: 1   MVASIKFLCVLLFFCLLSKGNCQCVLNDIAISQTTTGSIVKGKQVWKATITNNCICSQSS 60
           MVASIKF+CVL FFCLLSKGNC+CVLNDIAISQTTTGSIV+GKQVWKATITNNCIC QSS
Sbjct: 1   MVASIKFVCVLFFFCLLSKGNCECVLNDIAISQTTTGSIVQGKQVWKATITNNCICGQSS 60

Query: 61  LKLDCNGFNTVQEVDPSILAVAGAVCLVNGGQPIFDSTPISFTYAWDNAFPFKPLSSQIN 120
           LKLDCNGFNTVQ VDPSILAV+G+VCLVNGGQPIF STPISFTYA DNAFPFKPLSSQI+
Sbjct: 61  LKLDCNGFNTVQAVDPSILAVSGSVCLVNGGQPIFQSTPISFTYASDNAFPFKPLSSQIS 120

Query: 121 CS 123
           CS
Sbjct: 121 CS 122

[Close]

BLAST of IVF0003032 vs. ExPASy TrEMBL
Match: A0A0A0LDN0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G875990 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 8.3e-45
Identity = 88/122 (72.13%), Postives = 102/122 (83.61%), Query Frame = 0


Query: 1   MVASIKFLCVLLFFCLLSKGNCQCVLNDIAISQTTTGSIVKGKQVWKATITNNCICSQSS 60
           MVASI +  +L FFCLLSKGNC+C +NDI ISQ+TTG  V GKQ W+ATI N C+CSQ S
Sbjct: 1   MVASINYFYLLFFFCLLSKGNCECSMNDIEISQSTTGREVNGKQEWRATIRNKCVCSQYS 60

Query: 61  LKLDCNGFNTVQEVDPSILAVAGAVCLVNGGQPIFDSTPISFTYAWDNAFPFKPLSSQIN 120
           +K DCNGFNTV++VD SIL VAG+VCLVN GQPIF+S+PISFTYAWDNAFPF PL SQ+ 
Sbjct: 61  VKFDCNGFNTVEKVDESILMVAGSVCLVNNGQPIFNSSPISFTYAWDNAFPFSPLFSQVA 120

Query: 121 CS 123
           CS
Sbjct: 121 CS 122

[Close]

BLAST of IVF0003032 vs. ExPASy TrEMBL
Match: A0A6J1CKK7 (uncharacterized protein At1g05835-like OS=Momordica charantia OX=3673 GN=LOC111012144 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 2.2e-37
Identity = 78/122 (63.93%), Postives = 91/122 (74.59%), Query Frame = 0


Query: 1   MVASIKFLCVLLFFCLLSKGNCQCVLNDIAISQTTTGSIVKGKQVWKATITNNCICSQSS 60
           MVASIK LC L FFCLLSKGNCQC L DI+I Q  T   V G+Q W  T++NNC+CSQ +
Sbjct: 1   MVASIKLLCALFFFCLLSKGNCQCSLGDISIKQEATEKRVGGQQEWLVTVSNNCVCSQYN 60

Query: 61  LKLDCNGFNTVQEVDPSILAVAGAVCLVNGGQPIFDSTPISFTYAWDNAFPFKPLSSQIN 120
           +KLDC GF++ + VD S L   G  CL+NGG+PIF S PISFTYAWD  FPFKPLSSQ+ 
Sbjct: 61  VKLDCTGFSSEEIVDSSKLTNTGNECLINGGRPIFKSDPISFTYAWDLIFPFKPLSSQVA 120

Query: 121 CS 123
           CS
Sbjct: 121 CS 122

[Close]

BLAST of IVF0003032 vs. ExPASy TrEMBL
Match: A0A7N2M2J3 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 7.7e-35
Identity = 71/122 (58.20%), Postives = 87/122 (71.31%), Query Frame = 0


Query: 1   MVASIKFLCVLLFFCLLSKGNCQCVLNDIAISQTTTGSIVKGKQVWKATITNNCICSQSS 60
           M   IKFLCVL     + KGNCQC L+ + I Q+ TG +V+ K VW  TI N C+CSQS 
Sbjct: 1   MATFIKFLCVLFVLSFVGKGNCQCTLSQVTIKQSKTGEVVQQKPVWSVTINNGCLCSQSD 60

Query: 61  LKLDCNGFNTVQEVDPSILAVAGAVCLVNGGQPIFDSTPISFTYAWDNAFPFKPLSSQIN 120
           LKL CNGF TV+ VDPS+L+ +G  CLVN G P+  S+ +SFTYAWD +F F+PLSSQIN
Sbjct: 61  LKLSCNGFQTVKPVDPSVLSKSGNECLVNNGVPVAPSSSLSFTYAWDTSFSFQPLSSQIN 120

Query: 121 CS 123
           CS
Sbjct: 121 CS 122

[Close]

BLAST of IVF0003032 vs. ExPASy TrEMBL
Match: A0A2P5Y751 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A13G066500v1 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.7e-34
Identity = 70/122 (57.38%), Postives = 89/122 (72.95%), Query Frame = 0


Query: 1   MVASIKFLCVLLFFCLLSKGNCQCVLNDIAISQTTTGSIVKGKQVWKATITNNCICSQSS 60
           M  ++ F  V+LF  L+ +G CQC L D+ I QT TG  V+ K  WKAT+ N+CIC+QS 
Sbjct: 1   MATTLTFFFVVLFLALIGQGYCQCTLADVKIIQTQTGKTVENKPEWKATVKNDCICTQSD 60

Query: 61  LKLDCNGFNTVQEVDPSILAVAGAVCLVNGGQPIFDSTPISFTYAWDNAFPFKPLSSQIN 120
           LKL C+GF TV+ VD S++A  GA CL+NGGQP+  S+ +SF YAWD +FPFKPLSSQIN
Sbjct: 61  LKLSCDGFQTVEAVDSSLMAKTGAECLINGGQPVASSSNLSFNYAWDTSFPFKPLSSQIN 120

Query: 121 CS 123
           CS
Sbjct: 121 CS 122

[Close]

BLAST of IVF0003032 vs. NCBI nr
Match: XP_038896903.1 (TPD1 protein homolog 1-like [Benincasa hispida])

HSP 1 Score: 192 bits (488), Expect = 8.03e-61
Identity = 91/122 (74.59%), Postives = 102/122 (83.61%), Query Frame = 0


Query: 1   MVASIKFLCVLLFFCLLSKGNCQCVLNDIAISQTTTGSIVKGKQVWKATITNNCICSQSS 60
           MVASIKFLCVL FFCLLSKG  QC +NDI ISQ+TTG  V GKQ W+ATITNNC+CSQ S
Sbjct: 1   MVASIKFLCVLFFFCLLSKGKSQCSMNDITISQSTTGKEVNGKQEWRATITNNCVCSQYS 60

Query: 61  LKLDCNGFNTVQEVDPSILAVAGAVCLVNGGQPIFDSTPISFTYAWDNAFPFKPLSSQIN 120
           +K DCNGFN+V++VD SIL VAG+ CLVN GQP+F S PISFTYAWDNAF FKPL SQ+ 
Sbjct: 61  VKFDCNGFNSVEKVDESILMVAGSECLVNNGQPMFKSNPISFTYAWDNAFSFKPLFSQVA 120

Query: 121 CS 122
           CS
Sbjct: 121 CS 122

[Close]

BLAST of IVF0003032 vs. NCBI nr
Match: KGN60075.1 (hypothetical protein Csa_001952 [Cucumis sativus])

HSP 1 Score: 189 bits (480), Expect = 1.33e-59
Identity = 88/122 (72.13%), Postives = 102/122 (83.61%), Query Frame = 0


Query: 1   MVASIKFLCVLLFFCLLSKGNCQCVLNDIAISQTTTGSIVKGKQVWKATITNNCICSQSS 60
           MVASI +  +L FFCLLSKGNC+C +NDI ISQ+TTG  V GKQ W+ATI N C+CSQ S
Sbjct: 1   MVASINYFYLLFFFCLLSKGNCECSMNDIEISQSTTGREVNGKQEWRATIRNKCVCSQYS 60

Query: 61  LKLDCNGFNTVQEVDPSILAVAGAVCLVNGGQPIFDSTPISFTYAWDNAFPFKPLSSQIN 120
           +K DCNGFNTV++VD SIL VAG+VCLVN GQPIF+S+PISFTYAWDNAFPF PL SQ+ 
Sbjct: 61  VKFDCNGFNTVEKVDESILMVAGSVCLVNNGQPIFNSSPISFTYAWDNAFPFSPLFSQVA 120

Query: 121 CS 122
           CS
Sbjct: 121 CS 122

[Close]

BLAST of IVF0003032 vs. NCBI nr
Match: XP_022141896.1 (uncharacterized protein At1g05835-like [Momordica charantia])

HSP 1 Score: 164 bits (416), Expect = 7.51e-50
Identity = 78/122 (63.93%), Postives = 91/122 (74.59%), Query Frame = 0


Query: 1   MVASIKFLCVLLFFCLLSKGNCQCVLNDIAISQTTTGSIVKGKQVWKATITNNCICSQSS 60
           MVASIK LC L FFCLLSKGNCQC L DI+I Q  T   V G+Q W  T++NNC+CSQ +
Sbjct: 1   MVASIKLLCALFFFCLLSKGNCQCSLGDISIKQEATEKRVGGQQEWLVTVSNNCVCSQYN 60

Query: 61  LKLDCNGFNTVQEVDPSILAVAGAVCLVNGGQPIFDSTPISFTYAWDNAFPFKPLSSQIN 120
           +KLDC GF++ + VD S L   G  CL+NGG+PIF S PISFTYAWD  FPFKPLSSQ+ 
Sbjct: 61  VKLDCTGFSSEEIVDSSKLTNTGNECLINGGRPIFKSDPISFTYAWDLIFPFKPLSSQVA 120

Query: 121 CS 122
           CS
Sbjct: 121 CS 122

[Close]

BLAST of IVF0003032 vs. NCBI nr
Match: XP_030926576.1 (TPD1 protein homolog 1-like [Quercus lobata])

HSP 1 Score: 156 bits (394), Expect = 1.68e-46
Identity = 71/122 (58.20%), Postives = 87/122 (71.31%), Query Frame = 0


Query: 1   MVASIKFLCVLLFFCLLSKGNCQCVLNDIAISQTTTGSIVKGKQVWKATITNNCICSQSS 60
           M   IKFLCVL     + KGNCQC L+ + I Q+ TG +V+ K VW  TI N C+CSQS 
Sbjct: 1   MATFIKFLCVLFVLSFVGKGNCQCTLSQVTIKQSKTGEVVQQKPVWSVTINNGCLCSQSD 60

Query: 61  LKLDCNGFNTVQEVDPSILAVAGAVCLVNGGQPIFDSTPISFTYAWDNAFPFKPLSSQIN 120
           LKL CNGF TV+ VDPS+L+ +G  CLVN G P+  S+ +SFTYAWD +F F+PLSSQIN
Sbjct: 61  LKLSCNGFQTVKPVDPSVLSKSGNECLVNNGVPVAPSSSLSFTYAWDTSFSFQPLSSQIN 120

Query: 121 CS 122
           CS
Sbjct: 121 CS 122

[Close]

BLAST of IVF0003032 vs. NCBI nr
Match: XP_016675584.1 (uncharacterized protein At1g05835-like [Gossypium hirsutum] >KAB2047720.1 hypothetical protein ES319_A13G066500v1 [Gossypium barbadense] >TYG85600.1 hypothetical protein ES288_A13G068300v1 [Gossypium darwinii] >TYH90762.1 hypothetical protein ES332_A13G071300v1 [Gossypium tomentosum] >TYJ00145.1 hypothetical protein E1A91_A13G067800v1 [Gossypium mustelinum] >KAG4165160.1 hypothetical protein ERO13_A13G061900v2 [Gossypium hirsutum])

HSP 1 Score: 155 bits (391), Expect = 4.81e-46
Identity = 70/122 (57.38%), Postives = 89/122 (72.95%), Query Frame = 0


Query: 1   MVASIKFLCVLLFFCLLSKGNCQCVLNDIAISQTTTGSIVKGKQVWKATITNNCICSQSS 60
           M  ++ F  V+LF  L+ +G CQC L D+ I QT TG  V+ K  WKAT+ N+CIC+QS 
Sbjct: 1   MATTLTFFFVVLFLALIGQGYCQCTLADVKIIQTQTGKTVENKPEWKATVKNDCICTQSD 60

Query: 61  LKLDCNGFNTVQEVDPSILAVAGAVCLVNGGQPIFDSTPISFTYAWDNAFPFKPLSSQIN 120
           LKL C+GF TV+ VD S++A  GA CL+NGGQP+  S+ +SF YAWD +FPFKPLSSQIN
Sbjct: 61  LKLSCDGFQTVEAVDSSLMAKTGAECLINGGQPVASSSNLSFNYAWDTSFPFKPLSSQIN 120

Query: 121 CS 122
           CS
Sbjct: 121 CS 122

[Close]

BLAST of IVF0003032 vs. TAIR 10
Match: AT4G32110.1 (Beta-1,3-N-Acetylglucosaminyltransferase family protein )

HSP 1 Score: 89.7 bits (221), Expect = 1.7e-18
Identity = 43/117 (36.75%), Postives = 66/117 (56.41%), Query Frame = 0


Query: 6   KFLCVLLFFCLLSKGNCQCVLNDIAISQTTTGSIVKGKQVWKATITNNC-ICSQSSLKLD 65
           K LC++LF   +++G   C LN +++ Q+ TG +V+ K  W+  +TN C  C   + +L 
Sbjct: 7   KLLCLVLFLAFVNQGYGDCSLNSLSVKQSKTGKLVQNKPEWEVRVTNPCNNCKFQNTELL 66

Query: 66  CNGFNTVQEVDPSILAVAGAVCLVNGGQPIFDSTPISFTYAWDNAFPFKPLSSQINC 122
           C GFN+V  +D S+L  +G  CLVN G+ I     I F Y WD +F  K +   + C
Sbjct: 67  CVGFNSVTPIDTSLLLKSGDACLVNAGKFIVPHVDIVFKYVWDTSFDLKVIDGVMVC 123

[Close]

BLAST of IVF0003032 vs. TAIR 10
Match: AT4G32105.1 (Beta-1,3-N-Acetylglucosaminyltransferase family protein )

HSP 1 Score: 87.8 bits (216), Expect = 6.5e-18
Identity = 43/117 (36.75%), Postives = 64/117 (54.70%), Query Frame = 0


Query: 6   KFLCVLLFFCLLSKGNCQCVLNDIAISQTTTGSIVKGKQVWKATITNNC-ICSQSSLKLD 65
           K LC++LF   +++G   C LN +++ Q+ TG +V+ K  W+  +TN C  C     KL 
Sbjct: 7   KVLCLVLFLAFVNQGYGDCHLNYLSVKQSKTGKLVQNKPEWEVRVTNPCNNCKFQYTKLS 66

Query: 66  CNGFNTVQEVDPSILAVAGAVCLVNGGQPIFDSTPISFTYAWDNAFPFKPLSSQINC 122
           C GF +V  V  S+L+ +G +CL+N G  IF      F Y WD +F  K +   I C
Sbjct: 67  CVGFQSVTPVATSLLSKSGDICLLNAGNFIFPHVDFVFNYVWDTSFDLKVIDGVIVC 123

The following BLAST results are available for this feature:

BLAST of IVF0003032 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0003032 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEA1	5.5e-57	90.98	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G875970 PE=4 SV=1	[more]
A0A0A0LDN0	8.3e-45	72.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G875990 PE=4 SV=1	[more]
A0A6J1CKK7	2.2e-37	63.93	uncharacterized protein At1g05835-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A7N2M2J3	7.7e-35	58.20	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A2P5Y751	1.7e-34	57.38	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A13G066500v1 PE...	[more]

BLAST of IVF0003032 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896903.1	8.03e-61	74.59	TPD1 protein homolog 1-like [Benincasa hispida]	[more]
KGN60075.1	1.33e-59	72.13	hypothetical protein Csa_001952 [Cucumis sativus]	[more]
XP_022141896.1	7.51e-50	63.93	uncharacterized protein At1g05835-like [Momordica charantia]	[more]
XP_030926576.1	1.68e-46	58.20	TPD1 protein homolog 1-like [Quercus lobata]	[more]
XP_016675584.1	4.81e-46	57.38	uncharacterized protein At1g05835-like [Gossypium hirsutum] >KAB2047720.1 hypoth...	[more]

BLAST of IVF0003032 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G32110.1	1.7e-18	36.75	Beta-1,3-N-Acetylglucosaminyltransferase family protein	[more]
AT4G32105.1	6.5e-18	36.75	Beta-1,3-N-Acetylglucosaminyltransferase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040361	Tapetum determinant 1	PANTHER	PTHR33184	PROTEIN TAPETUM DETERMINANT 1-LIKE-RELATED	coord: 1..122
None	No IPR available	PANTHER	PTHR33184:SF44	BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN	coord: 1..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0003032.1	IVF0003032.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001709	cell fate determination