IVF0003029 (gene) Melon (IVF77) v1

Overview


Name	IVF0003029
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Mediator of RNA polymerase II transcription subunit 12-like isoform X1
Location	chr05: 19087405 .. 19087797 (-)
RNA-Seq Expression	IVF0003029
Synteny	IVF0003029

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACGATGTACCTATTGTATCTGCTCCAGTTCAAAGGAGACATGCTCTAGTGCAAGAGCTTGATGAATTGGAAGAAGTTGACCAACACGTGGAAGAAGTGCCTCTTGTCACACAAACACAGAGCGAGACTGGTTACGTTAGTCCAGTGATGATGATGTCGACGTTTGGAATGGGATATTATGATCCAGAAGTCGGTCAATCGTTAGACTTCGGAACACGATATTACAATTCAGAGGCAGATCCATCATCATCAAACTTTGGACAAGAATACTATGATTTAGGGACCAATCCATCATCTTCATACATGCATGGTCACGGACACGGTCGTGGAGAACATAACGAATATTTATACTACGAAGCGCCCGCAGCGGTACCCGAGAAACCAAATTAG

mRNA sequence

ATGTACGATGTACCTATTGTATCTGCTCCAGTTCAAAGGAGACATGCTCTAGTGCAAGAGCTTGATGAATTGGAAGAAGTTGACCAACACGTGGAAGAAGTGCCTCTTGTCACACAAACACAGAGCGAGACTGGTTACGTTAGTCCAGTGATGATGATGTCGACGTTTGGAATGGGATATTATGATCCAGAAGTCGGTCAATCGTTAGACTTCGGAACACGATATTACAATTCAGAGGCAGATCCATCATCATCAAACTTTGGACAAGAATACTATGATTTAGGGACCAATCCATCATCTTCATACATGCATGGTCACGGACACGGTCGTGGAGAACATAACGAATATTTATACTACGAAGCGCCCGCAGCGGTACCCGAGAAACCAAATTAG

Coding sequence (CDS)

ATGTACGATGTACCTATTGTATCTGCTCCAGTTCAAAGGAGACATGCTCTAGTGCAAGAGCTTGATGAATTGGAAGAAGTTGACCAACACGTGGAAGAAGTGCCTCTTGTCACACAAACACAGAGCGAGACTGGTTACGTTAGTCCAGTGATGATGATGTCGACGTTTGGAATGGGATATTATGATCCAGAAGTCGGTCAATCGTTAGACTTCGGAACACGATATTACAATTCAGAGGCAGATCCATCATCATCAAACTTTGGACAAGAATACTATGATTTAGGGACCAATCCATCATCTTCATACATGCATGGTCACGGACACGGTCGTGGAGAACATAACGAATATTTATACTACGAAGCGCCCGCAGCGGTACCCGAGAAACCAAATTAG

Protein sequence

MYDVPIVSAPVQRRHALVQELDELEEVDQHVEEVPLVTQTQSETGYVSPVMMMSTFGMGYYDPEVGQSLDFGTRYYNSEADPSSSNFGQEYYDLGTNPSSSYMHGHGHGRGEHNEYLYYEAPAAVPEKPN

Homology

[Close]

BLAST of IVF0003029 vs. ExPASy TrEMBL
Match: A0A5A7TX85 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2754G00110 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 2.8e-67
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MYDVPIVSAPVQRRHALVQELDELEEVDQHVEEVPLVTQTQSETGYVSPVMMMSTFGMGY 60
           MYDVPIVSAPVQRRHALVQELDELEEVDQHVEEVPLVTQTQSETGYVSPVMMMSTFGMGY
Sbjct: 1   MYDVPIVSAPVQRRHALVQELDELEEVDQHVEEVPLVTQTQSETGYVSPVMMMSTFGMGY 60

Query: 61  YDPEVGQSLDFGTRYYNSEADPSSSNFGQEYYDLGTNPSSSYMHGHGHGRGEHNEYLYYE 120
           YDPEVGQSLDFGTRYYNSEADPSSSNFGQEYYDLGTNPSSSYMHGHGHGRGEHNEYLYYE
Sbjct: 61  YDPEVGQSLDFGTRYYNSEADPSSSNFGQEYYDLGTNPSSSYMHGHGHGRGEHNEYLYYE 120

Query: 121 APAAVPEKPN 131
           APAAVPEKPN
Sbjct: 121 APAAVPEKPN 130

[Close]

BLAST of IVF0003029 vs. ExPASy TrEMBL
Match: A0A5A7U731 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1161G00130 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.8e-51
Identity = 107/130 (82.31%), Postives = 113/130 (86.92%), Query Frame = 0


Query: 1   MYDVPIVSAPVQRRHALVQELDELEEVDQHVEEVPLVTQTQSETGYVSPVMMMSTFGMGY 60
           MYDVPIV AP+QRR ALVQELDELEEVDQH+EEVP VTQT+SET YVSP++MMS FG GY
Sbjct: 277 MYDVPIVPAPIQRRRALVQELDELEEVDQHMEEVPPVTQTKSETSYVSPMIMMSAFGTGY 336

Query: 61  YDPEVGQSLDFGTRYYNSEADPSSSNFGQEYYDLGTNPSSSYMHGHGHGRGEHNEYLYYE 120
           YDP V QS DFGT YYN    PSSSNFGQEYYDLGTNPSSSYMHGHG GRGEHNEYLYY 
Sbjct: 337 YDPGVSQSSDFGTGYYNL-TGPSSSNFGQEYYDLGTNPSSSYMHGHGRGRGEHNEYLYYV 396

Query: 121 APAAVPEKPN 131
           APAAV E+PN
Sbjct: 397 APAAVSEEPN 405

[Close]

BLAST of IVF0003029 vs. ExPASy TrEMBL
Match: A0A5A7U558 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00220 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 5.9e-49
Identity = 102/128 (79.69%), Postives = 111/128 (86.72%), Query Frame = 0


Query: 1   MYDVPIVSAPVQRRHALVQELDELEEVDQHVEEVPLVTQTQSETGYVSPVMMMSTFGMGY 60
           MYDVPI  APVQRR ALVQ+ D+LEEVDQHVEE+PL+TQTQSE  YVSPVMMMS FG  Y
Sbjct: 147 MYDVPITLAPVQRRCALVQKPDQLEEVDQHVEEMPLMTQTQSEHSYVSPVMMMSAFGTTY 206

Query: 61  YDPEVGQSLDFGTRYYNSEADPSSSNFGQEYYDLGTNPSSSYMHGHGHGRGEHNEYLYYE 120
           YD  VGQS DFGT YYNSEA PSSSNFGQ+YYDLG++PSSSYMHGHG G GEHNEYLYY+
Sbjct: 207 YDLGVGQSSDFGTGYYNSEASPSSSNFGQQYYDLGSDPSSSYMHGHGRGHGEHNEYLYYK 266

Query: 121 APAAVPEK 129
            PAAVPE+
Sbjct: 267 VPAAVPEQ 274

[Close]

BLAST of IVF0003029 vs. ExPASy TrEMBL
Match: A0A5A7VIP6 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G001330 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 2.2e-48
Identity = 102/130 (78.46%), Postives = 110/130 (84.62%), Query Frame = 0


Query: 1   MYDVPIVSAPVQRRHALVQELDELEEVDQHVEEVPLVTQTQSETGYVSPVMMMSTFGMGY 60
           MYDVPIV APVQRR  LVQE D+LEEVDQH EEVP +TQTQSE  YVSPVMMM TFG  Y
Sbjct: 448 MYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQSEHNYVSPVMMMPTFGTTY 507

Query: 61  YDPEVGQSLDFGTRYYNSEADPSSSNFGQEYYDLGTNPSSSYMHGHGHGRGEHNEYLYYE 120
           YD EVGQS DFG  YYNSEA  SS++FGQ+YYDLG++PSSSYMHGHG GRGEHNEYLYYE
Sbjct: 508 YDSEVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHNEYLYYE 567

Query: 121 APAAVPEKPN 131
            PAAVPE+ N
Sbjct: 568 VPAAVPEQSN 577

[Close]

BLAST of IVF0003029 vs. ExPASy TrEMBL
Match: A0A5A7SU33 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold400G00810 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.4e-47
Identity = 101/130 (77.69%), Postives = 109/130 (83.85%), Query Frame = 0


Query: 1   MYDVPIVSAPVQRRHALVQELDELEEVDQHVEEVPLVTQTQSETGYVSPVMMMSTFGMGY 60
           MYDVPIV APVQRR  LVQE D+LEEVDQH EEVP +TQTQSE  YVSPVMMM TFG  Y
Sbjct: 597 MYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQSEHNYVSPVMMMPTFGTTY 656

Query: 61  YDPEVGQSLDFGTRYYNSEADPSSSNFGQEYYDLGTNPSSSYMHGHGHGRGEHNEYLYYE 120
           YD  VGQS DFG  YYNSEA  SS++FGQ+YYDLG++PSSSYMHGHG GRGEHNEYLYYE
Sbjct: 657 YDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHNEYLYYE 716

Query: 121 APAAVPEKPN 131
            PAAVPE+ N
Sbjct: 717 VPAAVPEQSN 726

[Close]

BLAST of IVF0003029 vs. NCBI nr
Match: KAA0047564.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa] >TYK14961.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 266 bits (679), Expect = 1.08e-89
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MYDVPIVSAPVQRRHALVQELDELEEVDQHVEEVPLVTQTQSETGYVSPVMMMSTFGMGY 60
           MYDVPIVSAPVQRRHALVQELDELEEVDQHVEEVPLVTQTQSETGYVSPVMMMSTFGMGY
Sbjct: 1   MYDVPIVSAPVQRRHALVQELDELEEVDQHVEEVPLVTQTQSETGYVSPVMMMSTFGMGY 60

Query: 61  YDPEVGQSLDFGTRYYNSEADPSSSNFGQEYYDLGTNPSSSYMHGHGHGRGEHNEYLYYE 120
           YDPEVGQSLDFGTRYYNSEADPSSSNFGQEYYDLGTNPSSSYMHGHGHGRGEHNEYLYYE
Sbjct: 61  YDPEVGQSLDFGTRYYNSEADPSSSNFGQEYYDLGTNPSSSYMHGHGHGRGEHNEYLYYE 120

Query: 121 APAAVPEKPN 130
           APAAVPEKPN
Sbjct: 121 APAAVPEKPN 130

[Close]

BLAST of IVF0003029 vs. NCBI nr
Match: KAA0051098.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa] >TYK02687.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 213 bits (541), Expect = 9.99e-65
Identity = 107/130 (82.31%), Postives = 113/130 (86.92%), Query Frame = 0


Query: 1   MYDVPIVSAPVQRRHALVQELDELEEVDQHVEEVPLVTQTQSETGYVSPVMMMSTFGMGY 60
           MYDVPIV AP+QRR ALVQELDELEEVDQH+EEVP VTQT+SET YVSP++MMS FG GY
Sbjct: 277 MYDVPIVPAPIQRRRALVQELDELEEVDQHMEEVPPVTQTKSETSYVSPMIMMSAFGTGY 336

Query: 61  YDPEVGQSLDFGTRYYNSEADPSSSNFGQEYYDLGTNPSSSYMHGHGHGRGEHNEYLYYE 120
           YDP V QS DFGT YYN    PSSSNFGQEYYDLGTNPSSSYMHGHG GRGEHNEYLYY 
Sbjct: 337 YDPGVSQSSDFGTGYYNLTG-PSSSNFGQEYYDLGTNPSSSYMHGHGRGRGEHNEYLYYV 396

Query: 121 APAAVPEKPN 130
           APAAV E+PN
Sbjct: 397 APAAVSEEPN 405

[Close]

BLAST of IVF0003029 vs. NCBI nr
Match: KAA0050408.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa] >TYJ97999.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 204 bits (520), Expect = 2.23e-63
Identity = 102/128 (79.69%), Postives = 111/128 (86.72%), Query Frame = 0


Query: 1   MYDVPIVSAPVQRRHALVQELDELEEVDQHVEEVPLVTQTQSETGYVSPVMMMSTFGMGY 60
           MYDVPI  APVQRR ALVQ+ D+LEEVDQHVEE+PL+TQTQSE  YVSPVMMMS FG  Y
Sbjct: 147 MYDVPITLAPVQRRCALVQKPDQLEEVDQHVEEMPLMTQTQSEHSYVSPVMMMSAFGTTY 206

Query: 61  YDPEVGQSLDFGTRYYNSEADPSSSNFGQEYYDLGTNPSSSYMHGHGHGRGEHNEYLYYE 120
           YD  VGQS DFGT YYNSEA PSSSNFGQ+YYDLG++PSSSYMHGHG G GEHNEYLYY+
Sbjct: 207 YDLGVGQSSDFGTGYYNSEASPSSSNFGQQYYDLGSDPSSSYMHGHGRGHGEHNEYLYYK 266

Query: 121 APAAVPEK 128
            PAAVPE+
Sbjct: 267 VPAAVPEQ 274

[Close]

BLAST of IVF0003029 vs. NCBI nr
Match: XP_016900498.1 (PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo])

HSP 1 Score: 194 bits (494), Expect = 6.56e-60
Identity = 100/130 (76.92%), Postives = 109/130 (83.85%), Query Frame = 0


Query: 1   MYDVPIVSAPVQRRHALVQELDELEEVDQHVEEVPLVTQTQ--SETGYVSPVMMMSTFGM 60
           MYDVPIV APVQRR  LVQE D+LEEVDQH EEVP +TQTQ  SE  YVSPVMMM TFGM
Sbjct: 63  MYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMMMPTFGM 122

Query: 61  GYYDPEVGQSLDFGTRYYNSEADPSSSNFGQEYYDLGTNPSSSYMHGHGHGRGEHNEYLY 120
            YYD  VGQS DFG  YYNSEA  SS++FGQ+YYDLG++PSSSYMHGHG GRGEHNEYLY
Sbjct: 123 TYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHNEYLY 182

Query: 121 YEAPAAVPEK 128
           Y+ PAAVPE+
Sbjct: 183 YKVPAAVPEQ 192

[Close]

BLAST of IVF0003029 vs. NCBI nr
Match: XP_008449513.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo])

HSP 1 Score: 194 bits (494), Expect = 1.20e-59
Identity = 100/130 (76.92%), Postives = 109/130 (83.85%), Query Frame = 0


Query: 1   MYDVPIVSAPVQRRHALVQELDELEEVDQHVEEVPLVTQTQ--SETGYVSPVMMMSTFGM 60
           MYDVPIV APVQRR  LVQE D+LEEVDQH EEVP +TQTQ  SE  YVSPVMMM TFGM
Sbjct: 83  MYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMMMPTFGM 142

Query: 61  GYYDPEVGQSLDFGTRYYNSEADPSSSNFGQEYYDLGTNPSSSYMHGHGHGRGEHNEYLY 120
            YYD  VGQS DFG  YYNSEA  SS++FGQ+YYDLG++PSSSYMHGHG GRGEHNEYLY
Sbjct: 143 TYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHNEYLY 202

Query: 121 YEAPAAVPEK 128
           Y+ PAAVPE+
Sbjct: 203 YKVPAAVPEQ 212

The following BLAST results are available for this feature:

BLAST of IVF0003029 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0003029 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TX85	2.8e-67	100.00	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5A7U731	2.8e-51	82.31	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5A7U558	5.9e-49	79.69	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5A7VIP6	2.2e-48	78.46	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5A7SU33	1.4e-47	77.69	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]

BLAST of IVF0003029 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047564.1	1.08e-89	100.00	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
KAA0051098.1	9.99e-65	82.31	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
KAA0050408.1	2.23e-63	79.69	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
XP_016900498.1	6.56e-60	76.92	PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumi...	[more]
XP_008449513.1	1.20e-59	76.92	PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X...	[more]

BLAST of IVF0003029 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0003029.2	IVF0003029.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010073	meristem maintenance
molecular_function	GO:0008270	zinc ion binding