IVF0002987 (gene) Melon (IVF77) v1

Overview


Name	IVF0002987
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	F-box protein
Location	tig00002689: 12119 .. 13956 (+)
RNA-Seq Expression	IVF0002987
Synteny	IVF0002987

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTCGGCGGTGGAGATTGATCGGTTACCGATTGATCTATTGGCCGATATTTTTGCTATGATAACATACTTCAGCGATTTGGCTCAGTAATTTTGGTTTTATTTTTTCTTCTTCTTCTTCTACTTTTTCTTTATGAATGTGTTTTGATTTTGTTGGATTGTTCTGTTAATAGGGCGAGGGGAGTGTGTAGAAAATGGAAAGATGGAGTTGAAATGTCAATTGGAAGAAGAAAGAGTTTGAGCTTTGCTGGTTGGAAAATGAAGGATGATTCCACTGCTCGTCTTATTCGCCATGAACATAGTCTTCGAGAGCTCGATTTGTAATCATTCTCTAACCATGTTTGTATCCATTACAAAATTGTTAGAAATCTTTATGATGCATTCGAGCGAGAGAGACCGAGATAAATCTTTCAAAGAAGTTTTTAAAATTTGGAAAGAATTTCAGGGTCGATCTCGATCGAGATTGATTTTGAGATAAACAAAATTAAGAATTTTCTAAAACCGTACTATTTTTTAAATCTAAAACAAAAAAGGGTGCTAGTTTTGTCAATTTCTTGTTCTTAATTTATTCGATCATATGAATGACTAAAACAATTAGAGAAATAACGTGGATAACTTGTTTTCGAGAAAAAAGATGTTAGTGTAGTCCTCGGAGAAGAAATAAACTTCTATGATTCTCTTAGTAATATCTATATCTTTTTTGGATTTTTAGCTCGAGAAGCCATTGGGGTTGCCAAATAACAGATCATGGATTGAACCAAATCTCTCTTGCGAAGTGCATTCCTAATCTTAAGTCCATTTCTCTTTGGGGTATGGTAGGGATCACTGACAAGGGCGTTGTGCAATTGGTATGGTATTGCCTTACCTCTCTATCTCGATTAATCATCATTCACATCTAGTTTAGTTACTAAGACAACTAAAAAAGATTTTTGTTTGTTTATAGATTCTTTTTCTTCGTCTTGGATTGTTGGGTTTAGACATACTGCTTCCATGATGTATAAATGTTTCAAGATGATTTACGTTTTCTAAATTTTGTTTTTATTTTTGGAATTTGACTCTTAACAACACTAAATTGTCTAACTTACGAAAATTATAATCCTTGTGGAAAATTCAGTAGAAGTGATTTAATTTTCAAAGACAAAAAACCGAAAAACAAAATAGTTACCCGCCTTAATTTCTATAAGTTTTACTTGACTTTAATTGTTTTAAAAGGTAGAAAATTAAAGAGTTTTCGGTTGAACTAGTTATAATAATCTTATGCCGAGTTCACAGTGGAGATTTTTTTAATTTGTATTTGGAGTCTTGGCTATATCAACCTATGTTTAAAGATGCAAACTATCTTATTTCGAGTTTATACGGTTAAGCATGTTAACATCCACTTTGTATATATTCGATGCCCTTTCACAAATCATTAACCAATATTTCCACTTCCCTTTTGCTAACACTCCATTTTGGTTGTGTTGATCAAAGATTTCAAGAGCCAACTCCTTGCAAAACCTCAATATTGGTGGCACCTATATAACAGACATATCATTGCTTGCAATAGCAAACAATTGTCCAAATTTAAAGGTGATTAATTATATTCTCAATAATCTCCTTCCATCTTCAATGATCAGTGCATAGTCTCTTTTCTTAATTCTGCAGACCATTGTCCTATGGTGCTGTCGCCTTGTAACGGAGAGCGGACTTCTTATTCTCGTACGTAAATGTTGCAAACTCGAGTCAATAAACGTTTGGGCAATGAGGGTTCCTGTCGACTGTTTCGTCGGTTTGGTTGCGATAAGTCCATCACTTCAAATAAAATCAAGAAGTGTTCTTGATTCTACGTGGGTGTAA

mRNA sequence

ATGGAGTCGGCGGTGGAGATTGATCGGTTACCGATTGATCTATTGGCCGATATTTTTGCTATGATAACATACTTCAGCGATTTGGCTCAGGCGAGGGGAGTGTGTAGAAAATGGAAAGATGGAGTTGAAATGTCAATTGGAAGAAGAAAGAGTTTGAGCTTTGCTGGTTGGAAAATGAAGGATGATTCCACTGCTCGTCTTATTCGCCATGAACATAGTCTTCGAGAGCTCGATTTCTCGAGAAGCCATTGGGGTTGCCAAATAACAGATCATGGATTGAACCAAATCTCTCTTGCGAAGTGCATTCCTAATCTTAAGTCCATTTCTCTTTGGGGTATGGTAGGGATCACTGACAAGGGCGTTGTGCAATTGATTTCAAGAGCCAACTCCTTGCAAAACCTCAATATTGGTGGCACCTATATAACAGACATATCATTGCTTGCAATAGCAAACAATTGTCCAAATTTAAAGACCATTGTCCTATGGTGCTGTCGCCTTGTAACGGAGAGCGGACTTCTTATTCTCGTACGTAAATGTTGCAAACTCGAGTCAATAAACGTTTGGGCAATGAGGGTTCCTGTCGACTGTTTCGTCGGTTTGGTTGCGATAAGTCCATCACTTCAAATAAAATCAAGAAGTGTTCTTGATTCTACGTGGGTGTAA

Coding sequence (CDS)

ATGGAGTCGGCGGTGGAGATTGATCGGTTACCGATTGATCTATTGGCCGATATTTTTGCTATGATAACATACTTCAGCGATTTGGCTCAGGCGAGGGGAGTGTGTAGAAAATGGAAAGATGGAGTTGAAATGTCAATTGGAAGAAGAAAGAGTTTGAGCTTTGCTGGTTGGAAAATGAAGGATGATTCCACTGCTCGTCTTATTCGCCATGAACATAGTCTTCGAGAGCTCGATTTCTCGAGAAGCCATTGGGGTTGCCAAATAACAGATCATGGATTGAACCAAATCTCTCTTGCGAAGTGCATTCCTAATCTTAAGTCCATTTCTCTTTGGGGTATGGTAGGGATCACTGACAAGGGCGTTGTGCAATTGATTTCAAGAGCCAACTCCTTGCAAAACCTCAATATTGGTGGCACCTATATAACAGACATATCATTGCTTGCAATAGCAAACAATTGTCCAAATTTAAAGACCATTGTCCTATGGTGCTGTCGCCTTGTAACGGAGAGCGGACTTCTTATTCTCGTACGTAAATGTTGCAAACTCGAGTCAATAAACGTTTGGGCAATGAGGGTTCCTGTCGACTGTTTCGTCGGTTTGGTTGCGATAAGTCCATCACTTCAAATAAAATCAAGAAGTGTTCTTGATTCTACGTGGGTGTAA

Protein sequence

MESAVEIDRLPIDLLADIFAMITYFSDLAQARGVCRKWKDGVEMSIGRRKSLSFAGWKMKDDSTARLIRHEHSLRELDFSRSHWGCQITDHGLNQISLAKCIPNLKSISLWGMVGITDKGVVQLISRANSLQNLNIGGTYITDISLLAIANNCPNLKTIVLWCCRLVTESGLLILVRKCCKLESINVWAMRVPVDCFVGLVAISPSLQIKSRSVLDSTWV

Homology

[Close]

BLAST of IVF0002987 vs. ExPASy Swiss-Prot
Match: Q9FH99 (F-box protein At5g67140 OS=Arabidopsis thaliana OX=3702 GN=At5g67140 PE=2 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 3.2e-76
Identity = 138/215 (64.19%), Postives = 167/215 (77.67%), Query Frame = 0


Query: 1   MESAVEIDRLPIDLLADIFAMITYFSDLAQARGVCRKWKDGVEMSIGRRKSLSFAGWKMK 60
           M+    IDRLP+DLLA IF++ T F+ LAQA GVC+KW+  V  S+ RR++LSFAGWKM 
Sbjct: 1   MDEEAAIDRLPLDLLAYIFSLATSFTVLAQASGVCKKWRKAVNQSMARRETLSFAGWKMD 60

Query: 61  DDSTARLIRHEHSLRELDFSRSHWGCQITDHGLNQISLAKCIPNLKSISLWGMVGITDKG 120
           DDST+RL+    +L+ELD SRS WGC ITD+GL QI+ A+C+ NL S+SLWGM  ITD G
Sbjct: 61  DDSTSRLVHLAFNLKELDISRSRWGCHITDNGLYQIASARCVSNLNSVSLWGMTAITDSG 120

Query: 121 VVQLISRANSLQNLNIGGTYITDISLLAIANNCPNLKTIVLWCCRLVTESGLLILVRKCC 180
           VVQLISR +SLQ+LNIGGT+ITD SL AIA  C  LKTI +WCCR VTE GLL+LV KC 
Sbjct: 121 VVQLISRTSSLQHLNIGGTFITDESLFAIAERCHQLKTIGMWCCRHVTERGLLVLVNKCR 180

Query: 181 KLESINVWAMRVPVDCFVGLVAISPSLQIKSRSVL 216
           KLESIN+W  RVPVDCF+ L+ ISP+LQIK   +L
Sbjct: 181 KLESINLWGTRVPVDCFIALLTISPALQIKPMELL 215

[Close]

BLAST of IVF0002987 vs. ExPASy Swiss-Prot
Match: Q9SKK0 (EIN3-binding F-box protein 1 OS=Arabidopsis thaliana OX=3702 GN=EBF1 PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.1e-11
Identity = 37/102 (36.27%), Postives = 62/102 (60.78%), Query Frame = 0


Query: 87  QITDHGLNQISLAKCIPNLKSISLWGMVGITDKGVVQLISRANSLQNLNIGG-TYITDIS 146
           +++D GL   S+ +  P+L S+SLW +  ITD G++++      L+ L +   + ITD  
Sbjct: 163 KVSDLGLR--SIGRSCPSLGSLSLWNVSTITDNGLLEIAEGCAQLEKLELNRCSTITDKG 222

Query: 147 LLAIANNCPNLKTIVLWCCRLVTESGLLILVRKCCKLESINV 188
           L+AIA +CPNL  + L  C  + + GLL + R C KL+S+++
Sbjct: 223 LVAIAKSCPNLTELTLEACSRIGDEGLLAIARSCSKLKSVSI 262

[Close]

BLAST of IVF0002987 vs. ExPASy Swiss-Prot
Match: Q9LPL4 (F-box protein SKP2A OS=Arabidopsis thaliana OX=3702 GN=SKP2A PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.8e-10
Identity = 53/206 (25.73%), Postives = 96/206 (46.60%), Query Frame = 0


Query: 10  LPIDLLADIFAMITYFSDLAQARGVCRKWKDGVEMSIGRRKSLSFAGWKM---------- 69
           +P++LL  I +++    ++  A GVC  W+D +   + R + LS+    M          
Sbjct: 31  IPVELLMRILSLVD-DRNVIVASGVCTGWRDAISFGLTRLR-LSWCNNNMNSLVLSLVPK 90

Query: 70  ----------------KDDSTARLIRHEHSLRELDFSRSHWGCQITDHGLNQISLAKCIP 129
                           +D++   +  H H L+ELD S+S    +ITD  L   +LA   P
Sbjct: 91  FVKLQTLNLRQDKPQLEDNAVEAIANHCHELQELDLSKS---LKITDRSL--YALAHGCP 150

Query: 130 NLKSISLWGMVGITDKGVVQLISRANSLQNLNIGGTY--ITDISLLAIANNCPNLKTIVL 188
           +L  ++L G    +D  +  L      L+ LN+ G    +TD +L AI NNC  ++++ L
Sbjct: 151 DLTKLNLSGCTSFSDTAIAYLTRFCRKLKVLNLCGCVKAVTDNALEAIGNNCNQMQSLNL 210

[Close]

BLAST of IVF0002987 vs. ExPASy Swiss-Prot
Match: O49286 (F-box protein SKP2B OS=Arabidopsis thaliana OX=3702 GN=SKP2B PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.0e-10
Identity = 60/236 (25.42%), Postives = 104/236 (44.07%), Query Frame = 0


Query: 10  LPIDLLADIFAMITYFSDLAQARGVCRKWKDGVEMSIGRRKSLSFAGWKM---------- 69
           +P++LL  I  ++   + +  A  +C  W+D V + +  R SLS+    M          
Sbjct: 31  IPVELLMKILNLVDDRTVII-ASCICSGWRDAVSLGL-TRLSLSWCKKNMNSLVLSLAPK 90

Query: 70  ----------------KDDSTARLIRHEHSLRELDFSRSHWGCQITDHGLNQISLAKCIP 129
                           +D++   +  H H L++LD S+S    +ITDH L   SLA+   
Sbjct: 91  FVKLQTLVLRQDKPQLEDNAVEAIANHCHELQDLDLSKS---SKITDHSL--YSLARGCT 150

Query: 130 NLKSISLWGMVGITDK------------------GVVQLIS---------RANSLQNLNI 189
           NL  ++L G    +D                   G V+ +S           N LQ+LN+
Sbjct: 151 NLTKLNLSGCTSFSDTALAHLTRFCRKLKILNLCGCVEAVSDNTLQAIGENCNQLQSLNL 210

Query: 190 GG-TYITDISLLAIANNCPNLKTIVLWCCRLVTESGLLILVRKCCKLESINVWAMR 192
           G    I+D  ++++A  CP+L+T+ L  C L+T+  ++ L  +C  L S+ ++  R
Sbjct: 211 GWCENISDDGVMSLAYGCPDLRTLDLCSCVLITDESVVALANRCIHLRSLGLYYCR 259

[Close]

BLAST of IVF0002987 vs. ExPASy Swiss-Prot
Match: Q8LB33 (F-box protein At3g58530 OS=Arabidopsis thaliana OX=3702 GN=At3g58530 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.6e-09
Identity = 38/132 (28.79%), Postives = 78/132 (59.09%), Query Frame = 0


Query: 62  DSTARLIRHE--HSLRELDFSRSHWGCQITDHGLNQISLAKCIPNLKSISLWGMVGITDK 121
           DS  +L++ E   +L  L++   +   +I+D+G+  I+     P LK  S++  V +TD 
Sbjct: 96  DSHLKLVKTECPDALLSLEWLNLNVCQKISDNGIEAIT--SICPKLKVFSIYWNVRVTDA 155

Query: 122 GVVQLISRANSLQNLNIGG-TYITDISLLAIANNCPNLKTIVLWCCRLVTESGLLILVRK 181
           G+  L+     + +LN+ G   +TD S+  +A + P+L+++ +  C  +T+ GLL +++K
Sbjct: 156 GIRNLVKNCRHITDLNLSGCKSLTDKSMQLVAESYPDLESLNITRCVKITDDGLLQVLQK 215

Query: 182 CCKLESINVWAM 191
           C  L+++N++A+
Sbjct: 216 CFSLQTLNLYAL 225

[Close]

BLAST of IVF0002987 vs. ExPASy TrEMBL
Match: A0A5D3BK56 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00740 PE=4 SV=1)

HSP 1 Score: 444.9 bits (1143), Expect = 2.0e-121
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0


Query: 1   MESAVEIDRLPIDLLADIFAMITYFSDLAQARGVCRKWKDGVEMSIGRRKSLSFAGWKMK 60
           MESAVEIDRLPIDLLADIFAMITYFSDLAQARGVCRKWKDGVEMSIGRRKSLSFAGWKMK
Sbjct: 1   MESAVEIDRLPIDLLADIFAMITYFSDLAQARGVCRKWKDGVEMSIGRRKSLSFAGWKMK 60

Query: 61  DDSTARLIRHEHSLRELDFSRSHWGCQITDHGLNQISLAKCIPNLKSISLWGMVGITDKG 120
           DDSTARLIRHEHSLRELDFSRSHWGCQITDHGLNQISLAKCIPNLKSISLWGMVGITDKG
Sbjct: 61  DDSTARLIRHEHSLRELDFSRSHWGCQITDHGLNQISLAKCIPNLKSISLWGMVGITDKG 120

Query: 121 VVQLISRANSLQNLNIGGTYITDISLLAIANNCPNLKTIVLWCCRLVTESGLLILVRKCC 180
           VVQLISRANSLQNLNIGGTYITDISLLAIANNCPNLKTIVLWCCRLVTESGLLILVRKCC
Sbjct: 121 VVQLISRANSLQNLNIGGTYITDISLLAIANNCPNLKTIVLWCCRLVTESGLLILVRKCC 180

Query: 181 KLESINVWAMRVPVDCFVGLVAISPSLQIKSRSVLDSTWV 221
           KLESINVWAMRVPVDCFVGLVAISPSLQIKSRSVLDSTWV
Sbjct: 181 KLESINVWAMRVPVDCFVGLVAISPSLQIKSRSVLDSTWV 220

[Close]

BLAST of IVF0002987 vs. ExPASy TrEMBL
Match: A0A1S4E1Q4 (F-box protein At5g67140-like OS=Cucumis melo OX=3656 GN=LOC103497374 PE=4 SV=1)

HSP 1 Score: 397.1 bits (1019), Expect = 4.7e-107
Identity = 202/227 (88.99%), Postives = 208/227 (91.63%), Query Frame = 0


Query: 1   MESAVEIDR-----LPIDLLADIFAMITYFSDLA--QARGVCRKWKDGVEMSIGRRKSLS 60
           MESAVEIDR       + LL  ++  +    D +  +ARGVCRKWKDGVEMSIGRRKSLS
Sbjct: 1   MESAVEIDRNFGFIFLLLLLLFLYECVLILLDCSVNRARGVCRKWKDGVEMSIGRRKSLS 60

Query: 61  FAGWKMKDDSTARLIRHEHSLRELDFSRSHWGCQITDHGLNQISLAKCIPNLKSISLWGM 120
           FAGWKMKDDSTARLIRHEHSLRELDFSRSHWGCQITDHGLNQISLAKCIPNLKSISLWGM
Sbjct: 61  FAGWKMKDDSTARLIRHEHSLRELDFSRSHWGCQITDHGLNQISLAKCIPNLKSISLWGM 120

Query: 121 VGITDKGVVQLISRANSLQNLNIGGTYITDISLLAIANNCPNLKTIVLWCCRLVTESGLL 180
           VGITDKGVVQLISRANSLQNLNIGGTYITDISLLAIANNCPNLKTIVLWCCRLVTESGLL
Sbjct: 121 VGITDKGVVQLISRANSLQNLNIGGTYITDISLLAIANNCPNLKTIVLWCCRLVTESGLL 180

Query: 181 ILVRKCCKLESINVWAMRVPVDCFVGLVAISPSLQIKSRSVLDSTWV 221
           ILVRKCCKLESINVWAMRVPVDCFVGLVAISPSLQIKSRSVLDSTWV
Sbjct: 181 ILVRKCCKLESINVWAMRVPVDCFVGLVAISPSLQIKSRSVLDSTWV 227

[Close]

BLAST of IVF0002987 vs. ExPASy TrEMBL
Match: A0A5A7TWK2 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G002960 PE=4 SV=1)

HSP 1 Score: 393.3 bits (1009), Expect = 6.8e-106
Identity = 199/220 (90.45%), Postives = 199/220 (90.45%), Query Frame = 0


Query: 1   MESAVEIDRLPIDLLADIFAMITYFSDLAQARGVCRKWKDGVEMSIGRRKSLSFAGWKMK 60
           MESAVEIDR                     ARGVCRKWKDGVEMSIGRRKSLSFAGWKMK
Sbjct: 1   MESAVEIDR---------------------ARGVCRKWKDGVEMSIGRRKSLSFAGWKMK 60

Query: 61  DDSTARLIRHEHSLRELDFSRSHWGCQITDHGLNQISLAKCIPNLKSISLWGMVGITDKG 120
           DDSTARLIRHEHSLRELDFSRSHWGCQITDHGLNQISLAKCIPNLKSISLWGMVGITDKG
Sbjct: 61  DDSTARLIRHEHSLRELDFSRSHWGCQITDHGLNQISLAKCIPNLKSISLWGMVGITDKG 120

Query: 121 VVQLISRANSLQNLNIGGTYITDISLLAIANNCPNLKTIVLWCCRLVTESGLLILVRKCC 180
           VVQLISRANSLQNLNIGGTYITDISLLAIANNCPNLKTIVLWCCRLVTESGLLILVRKCC
Sbjct: 121 VVQLISRANSLQNLNIGGTYITDISLLAIANNCPNLKTIVLWCCRLVTESGLLILVRKCC 180

Query: 181 KLESINVWAMRVPVDCFVGLVAISPSLQIKSRSVLDSTWV 221
           KLESINVWAMRVPVDCFVGLVAISPSLQIKSRSVLDSTWV
Sbjct: 181 KLESINVWAMRVPVDCFVGLVAISPSLQIKSRSVLDSTWV 199

[Close]

BLAST of IVF0002987 vs. ExPASy TrEMBL
Match: A0A1S4E1P2 (F-box protein At5g67140 OS=Cucumis melo OX=3656 GN=LOC103497375 PE=4 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 2.1e-99
Identity = 183/219 (83.56%), Postives = 200/219 (91.32%), Query Frame = 0


Query: 1   MESAVEIDRLPIDLLADIFAMITYFSDLAQARGVCRKWKDGVEMSIGRRKSLSFAGWKMK 60
           ME   EIDRLPIDLLA IFAMIT F+DLAQA GVCRKWK+GV++S+GRRKSLSFAGWKM 
Sbjct: 11  MELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRKSLSFAGWKMD 70

Query: 61  DDSTARLIRHEHSLRELDFSRSHWGCQITDHGLNQISLAKCIPNLKSISLWGMVGITDKG 120
           D+STARLIRH +SLRELD SRS WGCQITDHGL +ISLAKCIPNLKSISLWGM GITDKG
Sbjct: 71  DNSTARLIRHAYSLRELDISRSRWGCQITDHGLYEISLAKCIPNLKSISLWGMAGITDKG 130

Query: 121 VVQLISRANSLQNLNIGGTYITDISLLAIANNCPNLKTIVLWCCRLVTESGLLILVRKCC 180
           VVQLISRANSLQNLNIGGT++TD+SL AIA++CPNLKTIVLW CR VTE+GLLILV KC 
Sbjct: 131 VVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTETGLLILVSKCR 190

Query: 181 KLESINVWAMRVPVDCFVGLVAISPSLQIKSRSVLDSTW 220
           KLESINVW MRVPVDCF+GLVAISPSLQIKSRS+L+S W
Sbjct: 191 KLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLNSMW 229

[Close]

BLAST of IVF0002987 vs. ExPASy TrEMBL
Match: A0A5D3BMX7 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00750 PE=4 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 2.1e-99
Identity = 183/219 (83.56%), Postives = 200/219 (91.32%), Query Frame = 0


Query: 1   MESAVEIDRLPIDLLADIFAMITYFSDLAQARGVCRKWKDGVEMSIGRRKSLSFAGWKMK 60
           ME   EIDRLPIDLLA IFAMIT F+DLAQA GVCRKWK+GV++S+GRRKSLSFAGWKM 
Sbjct: 11  MELEPEIDRLPIDLLAHIFAMITSFTDLAQACGVCRKWKEGVKLSLGRRKSLSFAGWKMD 70

Query: 61  DDSTARLIRHEHSLRELDFSRSHWGCQITDHGLNQISLAKCIPNLKSISLWGMVGITDKG 120
           D+STARLIRH +SLRELD SRS WGCQITDHGL +ISLAKCIPNLKSISLWGM GITDKG
Sbjct: 71  DNSTARLIRHAYSLRELDISRSRWGCQITDHGLYEISLAKCIPNLKSISLWGMAGITDKG 130

Query: 121 VVQLISRANSLQNLNIGGTYITDISLLAIANNCPNLKTIVLWCCRLVTESGLLILVRKCC 180
           VVQLISRANSLQNLNIGGT++TD+SL AIA++CPNLKTIVLW CR VTE+GLLILV KC 
Sbjct: 131 VVQLISRANSLQNLNIGGTFVTDVSLYAIADSCPNLKTIVLWSCRHVTETGLLILVSKCR 190

Query: 181 KLESINVWAMRVPVDCFVGLVAISPSLQIKSRSVLDSTW 220
           KLESINVW MRVPVDCF+GLVAISPSLQIKSRS+L+S W
Sbjct: 191 KLESINVWGMRVPVDCFIGLVAISPSLQIKSRSLLNSMW 229

[Close]

BLAST of IVF0002987 vs. NCBI nr
Match: TYJ99507.1 (F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 442 bits (1138), Expect = 1.01e-156
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0


Query: 1   MESAVEIDRLPIDLLADIFAMITYFSDLAQARGVCRKWKDGVEMSIGRRKSLSFAGWKMK 60
           MESAVEIDRLPIDLLADIFAMITYFSDLAQARGVCRKWKDGVEMSIGRRKSLSFAGWKMK
Sbjct: 1   MESAVEIDRLPIDLLADIFAMITYFSDLAQARGVCRKWKDGVEMSIGRRKSLSFAGWKMK 60

Query: 61  DDSTARLIRHEHSLRELDFSRSHWGCQITDHGLNQISLAKCIPNLKSISLWGMVGITDKG 120
           DDSTARLIRHEHSLRELDFSRSHWGCQITDHGLNQISLAKCIPNLKSISLWGMVGITDKG
Sbjct: 61  DDSTARLIRHEHSLRELDFSRSHWGCQITDHGLNQISLAKCIPNLKSISLWGMVGITDKG 120

Query: 121 VVQLISRANSLQNLNIGGTYITDISLLAIANNCPNLKTIVLWCCRLVTESGLLILVRKCC 180
           VVQLISRANSLQNLNIGGTYITDISLLAIANNCPNLKTIVLWCCRLVTESGLLILVRKCC
Sbjct: 121 VVQLISRANSLQNLNIGGTYITDISLLAIANNCPNLKTIVLWCCRLVTESGLLILVRKCC 180

Query: 181 KLESINVWAMRVPVDCFVGLVAISPSLQIKSRSVLDSTWV 220
           KLESINVWAMRVPVDCFVGLVAISPSLQIKSRSVLDSTWV
Sbjct: 181 KLESINVWAMRVPVDCFVGLVAISPSLQIKSRSVLDSTWV 220

[Close]

BLAST of IVF0002987 vs. NCBI nr
Match: XP_004149710.1 (F-box protein At5g67140 [Cucumis sativus] >KAE8651910.1 hypothetical protein Csa_006296 [Cucumis sativus])

HSP 1 Score: 414 bits (1065), Expect = 1.37e-145
Identity = 205/220 (93.18%), Postives = 214/220 (97.27%), Query Frame = 0


Query: 1   MESAVEIDRLPIDLLADIFAMITYFSDLAQARGVCRKWKDGVEMSIGRRKSLSFAGWKMK 60
           MESAVEIDRLPIDLLA IFAMITYFSDLAQARGVCR+WKDGV+MSIGRRKSLSFAGWK++
Sbjct: 1   MESAVEIDRLPIDLLAHIFAMITYFSDLAQARGVCRRWKDGVKMSIGRRKSLSFAGWKLE 60

Query: 61  DDSTARLIRHEHSLRELDFSRSHWGCQITDHGLNQISLAKCIPNLKSISLWGMVGITDKG 120
           DDSTA LIRHEHSLRELDFSRS WGCQITDHGLNQIS+AKC+PNLKSISLWGMV ITDKG
Sbjct: 61  DDSTAHLIRHEHSLRELDFSRSDWGCQITDHGLNQISIAKCVPNLKSISLWGMVRITDKG 120

Query: 121 VVQLISRANSLQNLNIGGTYITDISLLAIANNCPNLKTIVLWCCRLVTESGLLILVRKCC 180
           VVQLISRANSLQNLNIGGTYITDISLLAIA+NCPNLKTIVLWCCRLVTESGLLILVR C 
Sbjct: 121 VVQLISRANSLQNLNIGGTYITDISLLAIADNCPNLKTIVLWCCRLVTESGLLILVRNCH 180

Query: 181 KLESINVWAMRVPVDCFVGLVAISPSLQIKSRSVLDSTWV 220
           +LESINVWAMRVP+DCFVGLVAISPSLQIKSRSVLDSTWV
Sbjct: 181 QLESINVWAMRVPIDCFVGLVAISPSLQIKSRSVLDSTWV 220

[Close]

BLAST of IVF0002987 vs. NCBI nr
Match: XP_016902159.1 (PREDICTED: F-box protein At5g67140-like [Cucumis melo])

HSP 1 Score: 395 bits (1014), Expect = 1.04e-137
Identity = 202/227 (88.99%), Postives = 208/227 (91.63%), Query Frame = 0


Query: 1   MESAVEIDR-----LPIDLLADIFAMITYFSDLA--QARGVCRKWKDGVEMSIGRRKSLS 60
           MESAVEIDR       + LL  ++  +    D +  +ARGVCRKWKDGVEMSIGRRKSLS
Sbjct: 1   MESAVEIDRNFGFIFLLLLLLFLYECVLILLDCSVNRARGVCRKWKDGVEMSIGRRKSLS 60

Query: 61  FAGWKMKDDSTARLIRHEHSLRELDFSRSHWGCQITDHGLNQISLAKCIPNLKSISLWGM 120
           FAGWKMKDDSTARLIRHEHSLRELDFSRSHWGCQITDHGLNQISLAKCIPNLKSISLWGM
Sbjct: 61  FAGWKMKDDSTARLIRHEHSLRELDFSRSHWGCQITDHGLNQISLAKCIPNLKSISLWGM 120

Query: 121 VGITDKGVVQLISRANSLQNLNIGGTYITDISLLAIANNCPNLKTIVLWCCRLVTESGLL 180
           VGITDKGVVQLISRANSLQNLNIGGTYITDISLLAIANNCPNLKTIVLWCCRLVTESGLL
Sbjct: 121 VGITDKGVVQLISRANSLQNLNIGGTYITDISLLAIANNCPNLKTIVLWCCRLVTESGLL 180

Query: 181 ILVRKCCKLESINVWAMRVPVDCFVGLVAISPSLQIKSRSVLDSTWV 220
           ILVRKCCKLESINVWAMRVPVDCFVGLVAISPSLQIKSRSVLDSTWV
Sbjct: 181 ILVRKCCKLESINVWAMRVPVDCFVGLVAISPSLQIKSRSVLDSTWV 227

[Close]

BLAST of IVF0002987 vs. NCBI nr
Match: KAA0045775.1 (F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 391 bits (1004), Expect = 1.28e-136
Identity = 199/220 (90.45%), Postives = 199/220 (90.45%), Query Frame = 0


Query: 1   MESAVEIDRLPIDLLADIFAMITYFSDLAQARGVCRKWKDGVEMSIGRRKSLSFAGWKMK 60
           MESAVEIDR                     ARGVCRKWKDGVEMSIGRRKSLSFAGWKMK
Sbjct: 1   MESAVEIDR---------------------ARGVCRKWKDGVEMSIGRRKSLSFAGWKMK 60

Query: 61  DDSTARLIRHEHSLRELDFSRSHWGCQITDHGLNQISLAKCIPNLKSISLWGMVGITDKG 120
           DDSTARLIRHEHSLRELDFSRSHWGCQITDHGLNQISLAKCIPNLKSISLWGMVGITDKG
Sbjct: 61  DDSTARLIRHEHSLRELDFSRSHWGCQITDHGLNQISLAKCIPNLKSISLWGMVGITDKG 120

Query: 121 VVQLISRANSLQNLNIGGTYITDISLLAIANNCPNLKTIVLWCCRLVTESGLLILVRKCC 180
           VVQLISRANSLQNLNIGGTYITDISLLAIANNCPNLKTIVLWCCRLVTESGLLILVRKCC
Sbjct: 121 VVQLISRANSLQNLNIGGTYITDISLLAIANNCPNLKTIVLWCCRLVTESGLLILVRKCC 180

Query: 181 KLESINVWAMRVPVDCFVGLVAISPSLQIKSRSVLDSTWV 220
           KLESINVWAMRVPVDCFVGLVAISPSLQIKSRSVLDSTWV
Sbjct: 181 KLESINVWAMRVPVDCFVGLVAISPSLQIKSRSVLDSTWV 199

[Close]

BLAST of IVF0002987 vs. NCBI nr
Match: XP_038902841.1 (F-box protein At5g67140 isoform X3 [Benincasa hispida])

HSP 1 Score: 386 bits (992), Expect = 1.83e-134
Identity = 191/219 (87.21%), Postives = 204/219 (93.15%), Query Frame = 0


Query: 1   MESAVEIDRLPIDLLADIFAMITYFSDLAQARGVCRKWKDGVEMSIGRRKSLSFAGWKMK 60
           ME    I+RLPIDLLADIFAMITYF+DLAQA GVC+KWK+GV+MSIGRRKSLSFAGWK+ 
Sbjct: 1   MELEPAIERLPIDLLADIFAMITYFTDLAQASGVCKKWKEGVKMSIGRRKSLSFAGWKID 60

Query: 61  DDSTARLIRHEHSLRELDFSRSHWGCQITDHGLNQISLAKCIPNLKSISLWGMVGITDKG 120
           DDSTARLIRHE++LR+LD SRS WGCQITDHGL +ISLAKCIPNLKSISLWGMV ITD G
Sbjct: 61  DDSTARLIRHEYNLRDLDISRSRWGCQITDHGLQEISLAKCIPNLKSISLWGMVEITDTG 120

Query: 121 VVQLISRANSLQNLNIGGTYITDISLLAIANNCPNLKTIVLWCCRLVTESGLLILVRKCC 180
           VVQLISRANSLQNLNIGGTYITDIS+LAIANNCPNLKTIVLWCCR VTESGLLILV KC 
Sbjct: 121 VVQLISRANSLQNLNIGGTYITDISVLAIANNCPNLKTIVLWCCRHVTESGLLILVSKCR 180

Query: 181 KLESINVWAMRVPVDCFVGLVAISPSLQIKSRSVLDSTW 219
           KLESINVWAMRVP+DCF+GLVAISPSLQIKSRSVLDS W
Sbjct: 181 KLESINVWAMRVPIDCFIGLVAISPSLQIKSRSVLDSMW 219

[Close]

BLAST of IVF0002987 vs. TAIR 10
Match: AT5G67140.1 (F-box/RNI-like superfamily protein )

HSP 1 Score: 286.2 bits (731), Expect = 2.2e-77
Identity = 138/215 (64.19%), Postives = 167/215 (77.67%), Query Frame = 0


Query: 1   MESAVEIDRLPIDLLADIFAMITYFSDLAQARGVCRKWKDGVEMSIGRRKSLSFAGWKMK 60
           M+    IDRLP+DLLA IF++ T F+ LAQA GVC+KW+  V  S+ RR++LSFAGWKM 
Sbjct: 1   MDEEAAIDRLPLDLLAYIFSLATSFTVLAQASGVCKKWRKAVNQSMARRETLSFAGWKMD 60

Query: 61  DDSTARLIRHEHSLRELDFSRSHWGCQITDHGLNQISLAKCIPNLKSISLWGMVGITDKG 120
           DDST+RL+    +L+ELD SRS WGC ITD+GL QI+ A+C+ NL S+SLWGM  ITD G
Sbjct: 61  DDSTSRLVHLAFNLKELDISRSRWGCHITDNGLYQIASARCVSNLNSVSLWGMTAITDSG 120

Query: 121 VVQLISRANSLQNLNIGGTYITDISLLAIANNCPNLKTIVLWCCRLVTESGLLILVRKCC 180
           VVQLISR +SLQ+LNIGGT+ITD SL AIA  C  LKTI +WCCR VTE GLL+LV KC 
Sbjct: 121 VVQLISRTSSLQHLNIGGTFITDESLFAIAERCHQLKTIGMWCCRHVTERGLLVLVNKCR 180

Query: 181 KLESINVWAMRVPVDCFVGLVAISPSLQIKSRSVL 216
           KLESIN+W  RVPVDCF+ L+ ISP+LQIK   +L
Sbjct: 181 KLESINLWGTRVPVDCFIALLTISPALQIKPMELL 215

[Close]

BLAST of IVF0002987 vs. TAIR 10
Match: AT2G25490.1 (EIN3-binding F box protein 1 )

HSP 1 Score: 70.9 bits (172), Expect = 1.5e-12
Identity = 37/102 (36.27%), Postives = 62/102 (60.78%), Query Frame = 0


Query: 87  QITDHGLNQISLAKCIPNLKSISLWGMVGITDKGVVQLISRANSLQNLNIGG-TYITDIS 146
           +++D GL   S+ +  P+L S+SLW +  ITD G++++      L+ L +   + ITD  
Sbjct: 163 KVSDLGLR--SIGRSCPSLGSLSLWNVSTITDNGLLEIAEGCAQLEKLELNRCSTITDKG 222

Query: 147 LLAIANNCPNLKTIVLWCCRLVTESGLLILVRKCCKLESINV 188
           L+AIA +CPNL  + L  C  + + GLL + R C KL+S+++
Sbjct: 223 LVAIAKSCPNLTELTLEACSRIGDEGLLAIARSCSKLKSVSI 262

[Close]

BLAST of IVF0002987 vs. TAIR 10
Match: AT1G21410.1 (F-box/RNI-like superfamily protein )

HSP 1 Score: 67.8 bits (164), Expect = 1.3e-11
Identity = 53/206 (25.73%), Postives = 96/206 (46.60%), Query Frame = 0


Query: 10  LPIDLLADIFAMITYFSDLAQARGVCRKWKDGVEMSIGRRKSLSFAGWKM---------- 69
           +P++LL  I +++    ++  A GVC  W+D +   + R + LS+    M          
Sbjct: 31  IPVELLMRILSLVD-DRNVIVASGVCTGWRDAISFGLTRLR-LSWCNNNMNSLVLSLVPK 90

Query: 70  ----------------KDDSTARLIRHEHSLRELDFSRSHWGCQITDHGLNQISLAKCIP 129
                           +D++   +  H H L+ELD S+S    +ITD  L   +LA   P
Sbjct: 91  FVKLQTLNLRQDKPQLEDNAVEAIANHCHELQELDLSKS---LKITDRSL--YALAHGCP 150

Query: 130 NLKSISLWGMVGITDKGVVQLISRANSLQNLNIGGTY--ITDISLLAIANNCPNLKTIVL 188
           +L  ++L G    +D  +  L      L+ LN+ G    +TD +L AI NNC  ++++ L
Sbjct: 151 DLTKLNLSGCTSFSDTAIAYLTRFCRKLKVLNLCGCVKAVTDNALEAIGNNCNQMQSLNL 210

[Close]

BLAST of IVF0002987 vs. TAIR 10
Match: AT1G77000.1 (RNI-like superfamily protein )

HSP 1 Score: 67.0 bits (162), Expect = 2.1e-11
Identity = 60/236 (25.42%), Postives = 104/236 (44.07%), Query Frame = 0


Query: 10  LPIDLLADIFAMITYFSDLAQARGVCRKWKDGVEMSIGRRKSLSFAGWKM---------- 69
           +P++LL  I  ++   + +  A  +C  W+D V + +  R SLS+    M          
Sbjct: 31  IPVELLMKILNLVDDRTVII-ASCICSGWRDAVSLGL-TRLSLSWCKKNMNSLVLSLAPK 90

Query: 70  ----------------KDDSTARLIRHEHSLRELDFSRSHWGCQITDHGLNQISLAKCIP 129
                           +D++   +  H H L++LD S+S    +ITDH L   SLA+   
Sbjct: 91  FVKLQTLVLRQDKPQLEDNAVEAIANHCHELQDLDLSKS---SKITDHSL--YSLARGCT 150

Query: 130 NLKSISLWGMVGITDK------------------GVVQLIS---------RANSLQNLNI 189
           NL  ++L G    +D                   G V+ +S           N LQ+LN+
Sbjct: 151 NLTKLNLSGCTSFSDTALAHLTRFCRKLKILNLCGCVEAVSDNTLQAIGENCNQLQSLNL 210

Query: 190 GG-TYITDISLLAIANNCPNLKTIVLWCCRLVTESGLLILVRKCCKLESINVWAMR 192
           G    I+D  ++++A  CP+L+T+ L  C L+T+  ++ L  +C  L S+ ++  R
Sbjct: 211 GWCENISDDGVMSLAYGCPDLRTLDLCSCVLITDESVVALANRCIHLRSLGLYYCR 259

[Close]

BLAST of IVF0002987 vs. TAIR 10
Match: AT1G77000.2 (RNI-like superfamily protein )

HSP 1 Score: 67.0 bits (162), Expect = 2.1e-11
Identity = 60/236 (25.42%), Postives = 104/236 (44.07%), Query Frame = 0


Query: 10  LPIDLLADIFAMITYFSDLAQARGVCRKWKDGVEMSIGRRKSLSFAGWKM---------- 69
           +P++LL  I  ++   + +  A  +C  W+D V + +  R SLS+    M          
Sbjct: 31  IPVELLMKILNLVDDRTVII-ASCICSGWRDAVSLGL-TRLSLSWCKKNMNSLVLSLAPK 90

Query: 70  ----------------KDDSTARLIRHEHSLRELDFSRSHWGCQITDHGLNQISLAKCIP 129
                           +D++   +  H H L++LD S+S    +ITDH L   SLA+   
Sbjct: 91  FVKLQTLVLRQDKPQLEDNAVEAIANHCHELQDLDLSKS---SKITDHSL--YSLARGCT 150

Query: 130 NLKSISLWGMVGITDK------------------GVVQLIS---------RANSLQNLNI 189
           NL  ++L G    +D                   G V+ +S           N LQ+LN+
Sbjct: 151 NLTKLNLSGCTSFSDTALAHLTRFCRKLKILNLCGCVEAVSDNTLQAIGENCNQLQSLNL 210

Query: 190 GG-TYITDISLLAIANNCPNLKTIVLWCCRLVTESGLLILVRKCCKLESINVWAMR 192
           G    I+D  ++++A  CP+L+T+ L  C L+T+  ++ L  +C  L S+ ++  R
Sbjct: 211 GWCENISDDGVMSLAYGCPDLRTLDLCSCVLITDESVVALANRCIHLRSLGLYYCR 259

The following BLAST results are available for this feature:

BLAST of IVF0002987 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FH99	3.2e-76	64.19	F-box protein At5g67140 OS=Arabidopsis thaliana OX=3702 GN=At5g67140 PE=2 SV=1	[more]
Q9SKK0	2.1e-11	36.27	EIN3-binding F-box protein 1 OS=Arabidopsis thaliana OX=3702 GN=EBF1 PE=1 SV=1	[more]
Q9LPL4	1.8e-10	25.73	F-box protein SKP2A OS=Arabidopsis thaliana OX=3702 GN=SKP2A PE=1 SV=1	[more]
O49286	3.0e-10	25.42	F-box protein SKP2B OS=Arabidopsis thaliana OX=3702 GN=SKP2B PE=1 SV=1	[more]
Q8LB33	2.6e-09	28.79	F-box protein At3g58530 OS=Arabidopsis thaliana OX=3702 GN=At3g58530 PE=2 SV=1	[more]

BLAST of IVF0002987 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BK56	2.0e-121	100.00	F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00740 ...	[more]
A0A1S4E1Q4	4.7e-107	88.99	F-box protein At5g67140-like OS=Cucumis melo OX=3656 GN=LOC103497374 PE=4 SV=1	[more]
A0A5A7TWK2	6.8e-106	90.45	F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G002960...	[more]
A0A1S4E1P2	2.1e-99	83.56	F-box protein At5g67140 OS=Cucumis melo OX=3656 GN=LOC103497375 PE=4 SV=1	[more]
A0A5D3BMX7	2.1e-99	83.56	F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00750 ...	[more]

BLAST of IVF0002987 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ99507.1	1.01e-156	100.00	F-box protein [Cucumis melo var. makuwa]	[more]
XP_004149710.1	1.37e-145	93.18	F-box protein At5g67140 [Cucumis sativus] >KAE8651910.1 hypothetical protein Csa...	[more]
XP_016902159.1	1.04e-137	88.99	PREDICTED: F-box protein At5g67140-like [Cucumis melo]	[more]
KAA0045775.1	1.28e-136	90.45	F-box protein [Cucumis melo var. makuwa]	[more]
XP_038902841.1	1.83e-134	87.21	F-box protein At5g67140 isoform X3 [Benincasa hispida]	[more]

BLAST of IVF0002987 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G67140.1	2.2e-77	64.19	F-box/RNI-like superfamily protein	[more]
AT2G25490.1	1.5e-12	36.27	EIN3-binding F box protein 1	[more]
AT1G21410.1	1.3e-11	25.73	F-box/RNI-like superfamily protein	[more]
AT1G77000.1	2.1e-11	25.42	RNI-like superfamily protein	[more]
AT1G77000.2	2.1e-11	25.42	RNI-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006553	Leucine-rich repeat, cysteine-containing subtype	SMART	SM00367	LRR_CC_2	coord: 102..127 e-value: 0.33 score: 20.0 coord: 71..99 e-value: 95.0 score: 6.9 coord: 128..152 e-value: 10.0 score: 14.5 coord: 153..178 e-value: 8.8E-4 score: 28.6
None	No IPR available	GENE3D	1.20.1280.50		coord: 2..49 e-value: 1.7E-5 score: 26.6
None	No IPR available	PANTHER	PTHR16134	F-BOX/TPR REPEAT PROTEIN POF3	coord: 7..211
None	No IPR available	PANTHER	PTHR16134:SF117	SUBFAMILY NOT NAMED	coord: 7..211
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 65..207
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 50..215 e-value: 5.9E-27 score: 96.1
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 7..44

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0002987.1	IVF0002987.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding