IVF0002981 (gene) Melon (IVF77) v1

Overview


Name	IVF0002981
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	PSI-G
Location	chr06: 23065383 .. 23066682 (+)
RNA-Seq Expression	IVF0002981
Synteny	IVF0002981

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCCGCCTCCTCCTCCGCCGTCTTCGTCGCCCCAACCTTCTCGGCTACCGCCACGAGGCAGCAGCCCAGTCCCACCACCATATCGTTCCAAGGCCTCCGTGCGCTCCCCAGCGTGAAATCGAGCCGGTCGATTGTTGCGACAAAGACCCGGAGATCGATGACGGTGAAGGCGGAACTGAATCCATCTCTAGTGATAAGCCTAAGCACAGGGCTGTCCTTGTTCTTAGGGAGGTTTGTGTTCTTCAATTTCCAAAGGGAGAATGTGAGCAAGCAAGTGCCAGAGCAAAATGGGTTAACCCATTTTGAGGCTGGTGATGTTAGGGCTAAAGAATATGTTAGCCTCTTGAAATCTAATGATCCTGTTGGGTTTAATATTGTTGATGTTCTTGCTTGGGGTTCAATTGGTCATATTGTTGCTTATTATATCTTGGCTACTTCTAGCAATGGATATGATCCTAAGTTCTTCTAGTTGTTGTTGTTATTACTGTGGCTTTGTATAGCTAAATCCATCATTTATTGCTTTTGAAAAACTTTGTTTTTGTATCTTTCTCTAATGGGGTTTTTGTGGAATGATATTGGGAAAATGGGAAGATGGGGTTGTGAGTTATGTTGTCTACTGATTATTATTGCAAATGTAACTTTTTTGTTTTGGATGATGAACTCACAATATGCCTGTAGAATTGTTATATGGATGTATTAATTAATTACATGAACTCTTTACAATAATTCGTATTATTTTTCGAACCTTAAATATAATTAGCATATTAAGTAACACATACTACTAAACATTACTTTGGCCAAATTTTTGATGAAGTATCAAACAAAGTAAATTCATGGTTTTATAAAATGAACACAGCAATAGAATTCATCGTAAGCTTTAAGTTTCCCTATAAGGTTGCAGAAGAGAGAGAAAGAGAGAGAGAGGAGGTTTCTAGTAAAATCATCGAATTTGAAATCTCAAACCGAGTCATTGGCAGCGTCATCGGAATTGCGAGACATATCAGAGAGGTTGGAGCCGATGGAGCCACCACGAGTCATGGCAGAGCTCCGGTAGAAAAGAACCAATGTGAGTGGTAGGAGAACACAAACAATTGGATTTTGAGAAGCGAGATAAAGCTATTGGTGAGAGCAATAAATTTGGGGTTTTCTTTAGCTCTTCCATGTCGTATTCCGGCAATGCTCCCATTTTTGAACTCTCTGTTTGAACTCTCTGTTTTCCCTTCTGCTCATCCCTCCATTTATCCAAGAAGAATTTCAAATATAACGATTAGATTCAAATTATTATTATATACGAC

mRNA sequence

ATGGCCGCCGCCTCCTCCTCCGCCGTCTTCGTCGCCCCAACCTTCTCGGCTACCGCCACGAGGCAGCAGCCCAGTCCCACCACCATATCGTTCCAAGGCCTCCGTGCGCTCCCCAGCGTGAAATCGAGCCGGTCGATTGTTGCGACAAAGACCCGGAGATCGATGACGGTGAAGGCGGAACTGAATCCATCTCTAGTGATAAGCCTAAGCACAGGGCTGTCCTTGTTCTTAGGGAGCGTCATCGGAATTGCGAGACATATCAGAGAGGTTGGAGCCGATGGAGCCACCACGAGTCATGGCAGAGCTCCGGTAGAAAAGAACCAATGTGAGTGGTAGGAGAACACAAACAATTGGATTTTGAGAAGCGAGATAAAGCTATTGGTGAGAGCAATAAATTTGGGGTTTTCTTTAGCTCTTCCATGTCGTATTCCGGCAATGCTCCCATTTTTGAACTCTCTGTTTGAACTCTCTGTTTTCCCTTCTGCTCATCCCTCCATTTATCCAAGAAGAATTTCAAATATAACGATTAGATTCAAATTATTATTATATACGAC

Coding sequence (CDS)

ATGGCCGCCGCCTCCTCCTCCGCCGTCTTCGTCGCCCCAACCTTCTCGGCTACCGCCACGAGGCAGCAGCCCAGTCCCACCACCATATCGTTCCAAGGCCTCCGTGCGCTCCCCAGCGTGAAATCGAGCCGGTCGATTGTTGCGACAAAGACCCGGAGATCGATGACGGTGAAGGCGGAACTGAATCCATCTCTAGTGATAAGCCTAAGCACAGGGCTGTCCTTGTTCTTAGGGAGCGTCATCGGAATTGCGAGACATATCAGAGAGGTTGGAGCCGATGGAGCCACCACGAGTCATGGCAGAGCTCCGGTAGAAAAGAACCAATGTGAGTGGTAG

Protein sequence

MAAASSSAVFVAPTFSATATRQQPSPTTISFQGLRALPSVKSSRSIVATKTRRSMTVKAELNPSLVISLSTGLSLFLGSVIGIARHIREVGADGATTSHGRAPVEKNQCEW

Homology

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BLAST of IVF0002981 vs. ExPASy Swiss-Prot
Match: Q9S7N7 (Photosystem I reaction center subunit V, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAG PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.0e-06
Identity = 42/106 (39.62%), Postives = 63/106 (59.43%), Query Frame = 0


Query: 4   ASSSAVFVAPTFSATATRQQPSPTTISFQGLRALPSVKSSRSI--VATKTRRSMT--VKA 63
           A+S++  ++PT  +TA   + +P +ISF GLR L    SS ++  ++T  R+S +  V+A
Sbjct: 2   ATSASALLSPTTFSTAISHK-NPNSISFHGLRPLRLGGSSSALPKLSTTGRKSSSAVVRA 61

Query: 64  ELNPSLVISLSTGLSLFLGSVIGIARHIREVGADGATTSHGRAPVE 106
           EL+PS+VISLSTGLSLFLG  +        V   G    +G+   E
Sbjct: 62  ELSPSIVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGKTHFE 106

[Close]

BLAST of IVF0002981 vs. ExPASy Swiss-Prot
Match: P12357 (Photosystem I reaction center subunit V, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSAG PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 5.1e-06
Identity = 44/94 (46.81%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 1  MAAASSSAVFVAPTFSATATRQQPSP---------TTISFQGLRAL----PSVKSSRSIV 60
          MAAA++S   ++ T  A  + +QP P            SF GLR L     S  SS S+ 
Sbjct: 1  MAAATAS---LSSTLLAPCSSKQPQPQQQHQHQQLKCKSFSGLRPLKLNISSNNSSSSLS 60

Query: 61 ATKTRRSMTVKAELNPSLVISLSTGLSLFLGSVI 82
           +  RRSMT +AEL+PSLVISLSTGLSLFLG  +
Sbjct: 61 MSSARRSMTCRAELSPSLVISLSTGLSLFLGRFV 91

[Close]

BLAST of IVF0002981 vs. ExPASy TrEMBL
Match: A0A5D3CPR0 (PSI-G OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00430 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.3e-28
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  MAAASSSAVFVAPTFSATATRQQPSPTTISFQGLRALPSVKSSRSIVATKTRRSMTVKAE 60
          MAAASSSAVFVAPTFSATATRQQPSPTTISFQGLRALPSVKSSRSIVATKTRRSMTVKAE
Sbjct: 1  MAAASSSAVFVAPTFSATATRQQPSPTTISFQGLRALPSVKSSRSIVATKTRRSMTVKAE 60

Query: 61 LNPSLVISLSTGLSLFLGSVI 82
          LNPSLVISLSTGLSLFLG  +
Sbjct: 61 LNPSLVISLSTGLSLFLGRFV 81

[Close]

BLAST of IVF0002981 vs. ExPASy TrEMBL
Match: A0A1S3BKK6 (PSI-G OS=Cucumis melo OX=3656 GN=LOC103491045 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.3e-28
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  MAAASSSAVFVAPTFSATATRQQPSPTTISFQGLRALPSVKSSRSIVATKTRRSMTVKAE 60
          MAAASSSAVFVAPTFSATATRQQPSPTTISFQGLRALPSVKSSRSIVATKTRRSMTVKAE
Sbjct: 1  MAAASSSAVFVAPTFSATATRQQPSPTTISFQGLRALPSVKSSRSIVATKTRRSMTVKAE 60

Query: 61 LNPSLVISLSTGLSLFLGSVI 82
          LNPSLVISLSTGLSLFLG  +
Sbjct: 61 LNPSLVISLSTGLSLFLGRFV 81

[Close]

BLAST of IVF0002981 vs. ExPASy TrEMBL
Match: A0A0A0L4W3 (PSI-G OS=Cucumis sativus OX=3659 GN=Csa_3G060980 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.2e-26
Identity = 73/80 (91.25%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 2  AAASSSAVFVAPTFSATATRQQPSPTTISFQGLRALPSVKSSRSIVATKTRRSMTVKAEL 61
          AAASSSAVF APTFSATATRQQP+PTTISFQGLRALPSVKSSRS+VATK+RRSMTVKAEL
Sbjct: 3  AAASSSAVFAAPTFSATATRQQPNPTTISFQGLRALPSVKSSRSVVATKSRRSMTVKAEL 62

Query: 62 NPSLVISLSTGLSLFLGSVI 82
          NPSLVISLSTGLSLFLG  +
Sbjct: 63 NPSLVISLSTGLSLFLGRFV 82

[Close]

BLAST of IVF0002981 vs. ExPASy TrEMBL
Match: A0A6J1L2L3 (PSI-G OS=Cucurbita maxima OX=3661 GN=LOC111498528 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 7.8e-18
Identity = 56/80 (70.00%), Postives = 66/80 (82.50%), Query Frame = 0


Query: 2  AAASSSAVFVAPTFSATATRQQPSPTTISFQGLRALPSVKSSRSIVATKTRRSMTVKAEL 61
          A ASSSAVF A +FSA   RQQP+P+TIS+QGLR LP +KSSRS+ A K+ RS+ VKAEL
Sbjct: 3  AVASSSAVFAASSFSAAVRRQQPNPSTISYQGLRPLPGIKSSRSLAAVKSPRSLVVKAEL 62

Query: 62 NPSLVISLSTGLSLFLGSVI 82
          NPS+VISLSTGLSLFLG  +
Sbjct: 63 NPSVVISLSTGLSLFLGRFV 82

[Close]

BLAST of IVF0002981 vs. ExPASy TrEMBL
Match: A0A6J1F1K2 (PSI-G OS=Cucurbita moschata OX=3662 GN=LOC111441287 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.0e-17
Identity = 56/80 (70.00%), Postives = 67/80 (83.75%), Query Frame = 0


Query: 2  AAASSSAVFVAPTFSATATRQQPSPTTISFQGLRALPSVKSSRSIVATKTRRSMTVKAEL 61
          AAASSSAVF A +FSA+  RQQP+P+TIS+QGLR LP +KSSRS+   K+ RS+ VKAEL
Sbjct: 3  AAASSSAVFAASSFSASVGRQQPNPSTISYQGLRPLPGIKSSRSLAGVKSPRSVVVKAEL 62

Query: 62 NPSLVISLSTGLSLFLGSVI 82
          NPS+VISLSTGLSLFLG  +
Sbjct: 63 NPSVVISLSTGLSLFLGRFV 82

[Close]

BLAST of IVF0002981 vs. NCBI nr
Match: XP_008449063.1 (PREDICTED: photosystem I reaction center subunit V, chloroplastic [Cucumis melo] >KAA0065757.1 photosystem I reaction center subunit V [Cucumis melo var. makuwa] >TYK13781.1 photosystem I reaction center subunit V [Cucumis melo var. makuwa])

HSP 1 Score: 136 bits (343), Expect = 1.81e-38
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  MAAASSSAVFVAPTFSATATRQQPSPTTISFQGLRALPSVKSSRSIVATKTRRSMTVKAE 60
          MAAASSSAVFVAPTFSATATRQQPSPTTISFQGLRALPSVKSSRSIVATKTRRSMTVKAE
Sbjct: 1  MAAASSSAVFVAPTFSATATRQQPSPTTISFQGLRALPSVKSSRSIVATKTRRSMTVKAE 60

Query: 61 LNPSLVISLSTGLSLFLGSVI 81
          LNPSLVISLSTGLSLFLG  +
Sbjct: 61 LNPSLVISLSTGLSLFLGRFV 81

[Close]

BLAST of IVF0002981 vs. NCBI nr
Match: XP_004149569.1 (photosystem I reaction center subunit V, chloroplastic [Cucumis sativus] >KGN56044.1 hypothetical protein Csa_010215 [Cucumis sativus])

HSP 1 Score: 130 bits (326), Expect = 7.11e-36
Identity = 73/80 (91.25%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 2  AAASSSAVFVAPTFSATATRQQPSPTTISFQGLRALPSVKSSRSIVATKTRRSMTVKAEL 61
          AAASSSAVF APTFSATATRQQP+PTTISFQGLRALPSVKSSRS+VATK+RRSMTVKAEL
Sbjct: 3  AAASSSAVFAAPTFSATATRQQPNPTTISFQGLRALPSVKSSRSVVATKSRRSMTVKAEL 62

Query: 62 NPSLVISLSTGLSLFLGSVI 81
          NPSLVISLSTGLSLFLG  +
Sbjct: 63 NPSLVISLSTGLSLFLGRFV 82

[Close]

BLAST of IVF0002981 vs. NCBI nr
Match: XP_038903014.1 (photosystem I reaction center subunit V, chloroplastic [Benincasa hispida])

HSP 1 Score: 114 bits (284), Expect = 1.65e-29
Identity = 64/79 (81.01%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 3  AASSSAVFVAPTFSATATRQQPSPTTISFQGLRALPSVKSSRSIVATKTRRSMTVKAELN 62
          AASSSA+F APTFSA ATRQQP+PT +SFQGLRALPSVKSSR  VA K+RRS+ VKAELN
Sbjct: 4  AASSSAIFAAPTFSAAATRQQPTPTAVSFQGLRALPSVKSSRPGVAIKSRRSVVVKAELN 63

Query: 63 PSLVISLSTGLSLFLGSVI 81
          PSLVISLSTGLSLFLG  +
Sbjct: 64 PSLVISLSTGLSLFLGRFV 82

[Close]

BLAST of IVF0002981 vs. NCBI nr
Match: XP_023005588.1 (photosystem I reaction center subunit V, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 100 bits (250), Expect = 2.29e-24
Identity = 56/80 (70.00%), Postives = 66/80 (82.50%), Query Frame = 0


Query: 2  AAASSSAVFVAPTFSATATRQQPSPTTISFQGLRALPSVKSSRSIVATKTRRSMTVKAEL 61
          A ASSSAVF A +FSA   RQQP+P+TIS+QGLR LP +KSSRS+ A K+ RS+ VKAEL
Sbjct: 3  AVASSSAVFAASSFSAAVRRQQPNPSTISYQGLRPLPGIKSSRSLAAVKSPRSLVVKAEL 62

Query: 62 NPSLVISLSTGLSLFLGSVI 81
          NPS+VISLSTGLSLFLG  +
Sbjct: 63 NPSVVISLSTGLSLFLGRFV 82

[Close]

BLAST of IVF0002981 vs. NCBI nr
Match: XP_022934047.1 (photosystem I reaction center subunit V, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 100 bits (249), Expect = 3.24e-24
Identity = 56/80 (70.00%), Postives = 67/80 (83.75%), Query Frame = 0


Query: 2  AAASSSAVFVAPTFSATATRQQPSPTTISFQGLRALPSVKSSRSIVATKTRRSMTVKAEL 61
          AAASSSAVF A +FSA+  RQQP+P+TIS+QGLR LP +KSSRS+   K+ RS+ VKAEL
Sbjct: 3  AAASSSAVFAASSFSASVGRQQPNPSTISYQGLRPLPGIKSSRSLAGVKSPRSVVVKAEL 62

Query: 62 NPSLVISLSTGLSLFLGSVI 81
          NPS+VISLSTGLSLFLG  +
Sbjct: 63 NPSVVISLSTGLSLFLGRFV 82

[Close]

BLAST of IVF0002981 vs. TAIR 10
Match: AT1G55670.1 (photosystem I subunit G )

HSP 1 Score: 52.8 bits (125), Expect = 2.1e-07
Identity = 42/106 (39.62%), Postives = 63/106 (59.43%), Query Frame = 0


Query: 4   ASSSAVFVAPTFSATATRQQPSPTTISFQGLRALPSVKSSRSI--VATKTRRSMT--VKA 63
           A+S++  ++PT  +TA   + +P +ISF GLR L    SS ++  ++T  R+S +  V+A
Sbjct: 2   ATSASALLSPTTFSTAISHK-NPNSISFHGLRPLRLGGSSSALPKLSTTGRKSSSAVVRA 61

Query: 64  ELNPSLVISLSTGLSLFLGSVIGIARHIREVGADGATTSHGRAPVE 106
           EL+PS+VISLSTGLSLFLG  +        V   G    +G+   E
Sbjct: 62  ELSPSIVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGKTHFE 106

The following BLAST results are available for this feature:

BLAST of IVF0002981 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7N7	3.0e-06	39.62	Photosystem I reaction center subunit V, chloroplastic OS=Arabidopsis thaliana O...	[more]
P12357	5.1e-06	46.81	Photosystem I reaction center subunit V, chloroplastic OS=Spinacia oleracea OX=3...	[more]

BLAST of IVF0002981 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CPR0	1.3e-28	96.30	PSI-G OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00430 PE=3 SV=...	[more]
A0A1S3BKK6	1.3e-28	96.30	PSI-G OS=Cucumis melo OX=3656 GN=LOC103491045 PE=3 SV=1	[more]
A0A0A0L4W3	1.2e-26	91.25	PSI-G OS=Cucumis sativus OX=3659 GN=Csa_3G060980 PE=3 SV=1	[more]
A0A6J1L2L3	7.8e-18	70.00	PSI-G OS=Cucurbita maxima OX=3661 GN=LOC111498528 PE=3 SV=1	[more]
A0A6J1F1K2	1.0e-17	70.00	PSI-G OS=Cucurbita moschata OX=3662 GN=LOC111441287 PE=3 SV=1	[more]

BLAST of IVF0002981 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008449063.1	1.81e-38	96.30	PREDICTED: photosystem I reaction center subunit V, chloroplastic [Cucumis melo]...	[more]
XP_004149569.1	7.11e-36	91.25	photosystem I reaction center subunit V, chloroplastic [Cucumis sativus] >KGN560...	[more]
XP_038903014.1	1.65e-29	81.01	photosystem I reaction center subunit V, chloroplastic [Benincasa hispida]	[more]
XP_023005588.1	2.29e-24	70.00	photosystem I reaction center subunit V, chloroplastic-like [Cucurbita maxima]	[more]
XP_022934047.1	3.24e-24	70.00	photosystem I reaction center subunit V, chloroplastic-like [Cucurbita moschata]	[more]

BLAST of IVF0002981 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G55670.1	2.1e-07	39.62	photosystem I subunit G	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0002981.2	IVF0002981.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I