Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTTGCAATCGAGAGGATTTTCATCTTCATCTTCATCTTTTCACATATGTTGCAGTCGAGAGGATCATCACCTTCATCTTTTCACATGTGTTGCAGTCGAGAGAATCATCATCTTCATCTTCTCACATATGTTGCAGTCAAGAGAATCATCATTTTCATCTTCTAACATGTGTTACAGCCAAGAGTGTCATCATCTTTATCTTCTCACATGTGTTGCAGTTGAGAAGATCTTCATTTTCAACTTCATCTTCTCACATGGGTTGCAGCCAAGAGGACCATATTCATCTTTATCTTCAATGCGATCGTAACTGAGAGGATCATCTTCATTTTCCTCTTTAATACGATCATAATCATCTTCATCTTCAATACGATTGCAGCCGAGAGGACCATCATCTTCATCTTCAAAGTGTTGCTGCAGAGAGGATCTTCATCTTCTGCCATATGTTGCAGCCAAGAGGATCATCATCTTCATCTTCAATGTGTTGCAGCCAAGAAGATCATCATCTTCGTCTTCAATGTTGTCGCAATGGAGAGGATCATCTTCATCTTCGTCTTCAACATGACACAACCGAGAGGATCATCCTCTTCATCTTCAATGTGGCGCAGCAGAAACGATCGTCATCTTCATCTTCAATGTGGCGCAGCAGAAACGATCGTCATCTTCATCTTCAATGTGGTGCAGCAGAGACGATCATCATCTTCATCTTAA
mRNA sequence
ATGTGTTGCAATCGAGAGGATTTTCATCTTCATCTTCATCTTTTCACATATGTTGCAGTCGAGAGGATCATCACCTTCATCTTTTCACATGTGTTGCAGTCGAGAGAATCATCATCTTCATCTTCTCACATATGTTGCAGTCAAGAGAATCATCATTTTCATCTTCTAACATGTGTTACAGCCAAGAGTGTCATCATCTTTATCTTCTCACATGTGATCATCTTCATTTTCCTCTTTAATACGATCATAATCATCTTCATCTTCAATACGATTGCAGCCGAGAGGACCATCATCTTCATCTTCAAAGTGTTGCTGCAGAGAGGATCTTCATCTTCTGCCATATGTTGCAGCCAAGAGGATCATCATCTTCATCTTCAATGTGTTGCAGCCAAGAAGATCATCATCTTCGTCTTCAATGTTGTCGCAATGGAGAGGATCATCTTCATCTTCGTCTTCAACATGACACAACCGAGAGGATCATCCTCTTCATCTTCAATGTGGCGCAGCAGAAACGATCGTCATCTTCATCTTCAATGTGGCGCAGCAGAAACGATCGTCATCTTCATCTTCAATGTGGTGCAGCAGAGACGATCATCATCTTCATCTTAA
Coding sequence (CDS)
ATGTGTTGCAATCGAGAGGATTTTCATCTTCATCTTCATCTTTTCACATATGTTGCAGTCGAGAGGATCATCACCTTCATCTTTTCACATGTGTTGCAGTCGAGAGAATCATCATCTTCATCTTCTCACATATGTTGCAGTCAAGAGAATCATCATTTTCATCTTCTAACATGTGTTACAGCCAAGAGTGTCATCATCTTTATCTTCTCACATGTGATCATCTTCATTTTCCTCTTTAATACGATCATAATCATCTTCATCTTCAATACGATTGCAGCCGAGAGGACCATCATCTTCATCTTCAAAGTGTTGCTGCAGAGAGGATCTTCATCTTCTGCCATATGTTGCAGCCAAGAGGATCATCATCTTCATCTTCAATGTGTTGCAGCCAAGAAGATCATCATCTTCGTCTTCAATGTTGTCGCAATGGAGAGGATCATCTTCATCTTCGTCTTCAACATGACACAACCGAGAGGATCATCCTCTTCATCTTCAATGTGGCGCAGCAGAAACGATCGTCATCTTCATCTTCAATGTGGCGCAGCAGAAACGATCGTCATCTTCATCTTCAATGTGGTGCAGCAGAGACGATCATCATCTTCATCTTAA
Protein sequence
MCCNREDFHLHLHLFTYVAVERIITFIFSHVLQSRESSSSSSHICCSQENHHFHLLTCVTAKSVIIFIFSHVIIFIFLFNTIIIIFIFNTIAAERTIIFIFKVLLQRGSSSSAICCSQEDHHLHLQCVAAKKIIIFVFNVVAMERIIFIFVFNMTQPRGSSSSSSMWRSRNDRHLHLQCGAAETIVIFIFNVVQQRRSSSSS
Homology
BLAST of IVF0002940 vs. ExPASy TrEMBL
Match:
A0A5D3DRX7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00420 PE=4 SV=1)
HSP 1 Score: 289.3 bits (739), Expect = 1.3e-74
Identity = 160/182 (87.91%), Postives = 167/182 (91.76%), Query Frame = 0
Query: 21 ERIITFIFSHVLQSRESSSSSSHICCSQENHHFHLLTCVTAK---SVIIFIFSHV----I 80
ERIITFIFSHVLQSRESSSSSSHICCS+ENHHFHLLTCVTAK ++ IFIF+ + I
Sbjct: 75 ERIITFIFSHVLQSRESSSSSSHICCSRENHHFHLLTCVTAKTKRTIFIFIFNAIVTERI 134
Query: 81 IFIFLFNTIIIIFIFNTIAAERTIIFIFKVLLQRGSSSSAICCSQED--HHLHLQCVAAK 140
IFIFLFNTIIIIFIFNTIA ERTIIFIFKVLLQRGSSSSAICCSQED HHLHLQCVAAK
Sbjct: 135 IFIFLFNTIIIIFIFNTIATERTIIFIFKVLLQRGSSSSAICCSQEDHHHHLHLQCVAAK 194
Query: 141 KIIIFVFNVVAMERIIFIFVFNMTQPRGSSSSSSMWRSRNDRHLHLQCGAAETIVIFIFN 194
KIIIFVFNVVA ERIIFIFVFNMTQPRGSSSSSSMWRSRNDRHLHLQCGAAETI+I I N
Sbjct: 195 KIIIFVFNVVATERIIFIFVFNMTQPRGSSSSSSMWRSRNDRHLHLQCGAAETIIIIILN 254
BLAST of IVF0002940 vs. ExPASy TrEMBL
Match:
A0A5A7U1J1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G001320 PE=4 SV=1)
HSP 1 Score: 175.6 bits (444), Expect = 2.0e-40
Identity = 112/213 (52.58%), Postives = 141/213 (66.20%), Query Frame = 0
Query: 1 MCCNREDFHL----------HLHLFTYVAVERIITFIFSHVLQSRESSSSSSHICCSQEN 60
+CC+RE+ HL HLHLFT VAVERII FIFSH+LQSRESS SSS++C SQE
Sbjct: 73 ICCSRENHHLHFSYVFREDHHLHLFTCVAVERIIIFIFSHMLQSRESSFSSSNMCYSQEC 132
Query: 61 HHFHLLTCVTAKSVII--FIFSHVIIFIFLFNTIIII-------FIFNTIAAERTIIFIF 120
HH +LLTCV + + I FIFSH + ++++ + ++AAER IF
Sbjct: 133 HHLYLLTCVAVEKIFIFNFIFSHGLQPRGPYSSLSSMRSREDHHLHLQSVAAERIFIFCH 192
Query: 121 KVLLQRGSSSSAICCSQEDHHLHLQCVA-AKKIIIFVFNVVAMERIIFIFVFNMTQPRGS 180
+ + SSSS++CCSQEDHHL LQC + + ERII +F+FN+ Q + S
Sbjct: 193 MLQPRGSSSSSSMCCSQEDHHLRLQCCRNGEDHLHLRLQHDTTERII-LFIFNVAQQKRS 252
Query: 181 SSSSSMWRSRNDRHLHLQCGAAETIVIFIFNVV 194
SSSSSMWRSRNDRHLHLQCGAAETI+IFI NV+
Sbjct: 253 SSSSSMWRSRNDRHLHLQCGAAETIIIFILNVI 284
BLAST of IVF0002940 vs. ExPASy TrEMBL
Match:
A0A5A7TBX4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold121G00100 PE=4 SV=1)
HSP 1 Score: 159.5 bits (402), Expect = 1.5e-35
Identity = 115/217 (53.00%), Postives = 136/217 (62.67%), Query Frame = 0
Query: 1 MCCNREDFHLHLHLFTYVAVERIITFIFSHVLQSRESSSSSSHICCSQENHHFHLLTCVT 60
MCC+RED HLHLFT VA+ERII IFSHVLQ + SSS SSH+ CS+++HH HL TCV
Sbjct: 164 MCCSREDH--HLHLFTCVAIERIIISIFSHVLQLQGSSSPSSHMYCSRKDHHLHLFTCVA 223
Query: 61 AKSVIIFIFSHVI---------IFIFLFNTIIIIFIFNTIAAERTIIFIFKVLLQ-RGSS 120
+ +IIFIFSHV+ + + + IA ER I F F +LQ RGSS
Sbjct: 224 IERIIIFIFSHVLQLQGSSSPSSHMCYSCKDHHLHLLTCIAVERIINFTFSHVLQLRGSS 283
Query: 121 --SSAICCSQEDHHLH-LQCVAAKKIIIFVFNVVAMERIIFIFVFNMTQPRGSSSSSS-M 180
SS ICC QEDHHLH L CVA K+IIIF+F+ ++ Q RGSSSSSS M
Sbjct: 284 SLSSHICCKQEDHHLHLLTCVADKRIIIFIFS-------------HVLQTRGSSSSSSHM 343
Query: 181 WRSRNDRHLH-LQCGAAETIVIFIFNVVQQRRSSSSS 203
SR D HLH L C A E I+IFIF+ V Q R SSSS
Sbjct: 344 CCSREDHHLHLLTCVAVEKIIIFIFSHVLQSRGSSSS 365
BLAST of IVF0002940 vs. ExPASy TrEMBL
Match:
A0A5D3BVC5 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00860 PE=4 SV=1)
HSP 1 Score: 134.8 bits (338), Expect = 4.0e-28
Identity = 105/217 (48.39%), Postives = 123/217 (56.68%), Query Frame = 0
Query: 21 ERIITFIFSHVLQSRESSSSSSHICCSQENHHFHLLTCVTAKSVIIFIFSHVIIFIFLFN 80
+RII FIFSHVLQ R SSSSSSHICCS+E+HH HLLTCV A+ IIFIFSHV+ F +
Sbjct: 535 KRIIIFIFSHVLQPRGSSSSSSHICCSREDHHLHLLTCVAAERFIIFIFSHVLQFRGSSS 594
Query: 81 TIIIIFIFNTIAAERTIIFIFKVLLQRGSSSSAICC---------SQEDHHLH-LQCVAA 140
+ I + E + +F SSSS +CC SQEDHHLH L C AA
Sbjct: 595 SSFHI----CYSRENLHLNLFTYSKGSPSSSSPMCCSQKDLHLRFSQEDHHLHLLTCAAA 654
Query: 141 KKIIIFVFN------------------------------VVAMERIIFIFVF-NMTQPRG 191
K+IIIF+FN V A + IIFIF+F ++ QPRG
Sbjct: 655 KRIIIFIFNLLQQRGSLSSSSHIYCSREDLHLHFHLLTCVSAEKIIIFIFIFSHVLQPRG 714
BLAST of IVF0002940 vs. ExPASy TrEMBL
Match:
A0A5A7SRV7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00800 PE=4 SV=1)
HSP 1 Score: 130.2 bits (326), Expect = 9.8e-27
Identity = 94/200 (47.00%), Postives = 119/200 (59.50%), Query Frame = 0
Query: 1 MCCNREDFHLHLHLFTYVAVERIITFIFSHVLQSRESSSSSSHICCSQENHHFHL-LTCV 60
+C E LH VAVERI FIFS +LQ R SS SSS +CCSQ+++H H L CV
Sbjct: 81 LCLQCEHSREDLHHLPCVAVERIFIFIFSLMLQPRGSSFSSS-MCCSQKDNHLHFHLQCV 140
Query: 61 TAKSVIIFIFSHVIIFIFLFNTIIIIFIFNTIAA-ERTIIFIFKVLLQRGSSSSA-ICCS 120
AK + IFIFSHV F ++ + + I ER IIFIF QR SSSS+ + CS
Sbjct: 141 AAKKIFIFIFSHV--FRLRGSSSSSSSLSSPICCMERIIIFIFHAAQQRRSSSSSFLRCS 200
Query: 121 QEDHHLHLQCVAAKKIIIFVFNVVAMERIIFIFVFNMTQPRGSSSSSSMWRSRNDRHLHL 180
++ H LHL C AA+ +I+F+F+ Q R SSSSS M RSR+ LHL
Sbjct: 201 RDGHRLHLSCGAAETVIVFIFHA--------------AQQRRSSSSSFMRRSRDGHRLHL 260
Query: 181 QCGAAETIVIFIFNVVQQRR 198
CGAAET+++FIF+ QQRR
Sbjct: 261 PCGAAETVIVFIFHAAQQRR 263
BLAST of IVF0002940 vs. NCBI nr
Match:
TYK26477.1 (hypothetical protein E5676_scaffold313G00420 [Cucumis melo var. makuwa])
HSP 1 Score: 288 bits (737), Expect = 1.16e-94
Identity = 160/182 (87.91%), Postives = 167/182 (91.76%), Query Frame = 0
Query: 21 ERIITFIFSHVLQSRESSSSSSHICCSQENHHFHLLTCVTAKS---VIIFIFSHV----I 80
ERIITFIFSHVLQSRESSSSSSHICCS+ENHHFHLLTCVTAK+ + IFIF+ + I
Sbjct: 75 ERIITFIFSHVLQSRESSSSSSHICCSRENHHFHLLTCVTAKTKRTIFIFIFNAIVTERI 134
Query: 81 IFIFLFNTIIIIFIFNTIAAERTIIFIFKVLLQRGSSSSAICCSQEDHH--LHLQCVAAK 140
IFIFLFNTIIIIFIFNTIA ERTIIFIFKVLLQRGSSSSAICCSQEDHH LHLQCVAAK
Sbjct: 135 IFIFLFNTIIIIFIFNTIATERTIIFIFKVLLQRGSSSSAICCSQEDHHHHLHLQCVAAK 194
Query: 141 KIIIFVFNVVAMERIIFIFVFNMTQPRGSSSSSSMWRSRNDRHLHLQCGAAETIVIFIFN 193
KIIIFVFNVVA ERIIFIFVFNMTQPRGSSSSSSMWRSRNDRHLHLQCGAAETI+I I N
Sbjct: 195 KIIIFVFNVVATERIIFIFVFNMTQPRGSSSSSSMWRSRNDRHLHLQCGAAETIIIIILN 254
BLAST of IVF0002940 vs. NCBI nr
Match:
KAA0047505.1 (hypothetical protein E6C27_scaffold498G001320 [Cucumis melo var. makuwa])
HSP 1 Score: 174 bits (442), Expect = 9.31e-50
Identity = 113/223 (50.67%), Postives = 139/223 (62.33%), Query Frame = 0
Query: 1 MCCNREDFHLH----------LHLFTYVAVERIITFIFSHVLQSRESSSSSSHICCSQEN 60
+CC+RE+ HLH LHLFT VAVERII FIFSH+LQSRESS SSS++C SQE
Sbjct: 73 ICCSRENHHLHFSYVFREDHHLHLFTCVAVERIIIFIFSHMLQSRESSFSSSNMCYSQEC 132
Query: 61 HHFHLLTCVTAKSVIIF--IFSHVII-----------------FIFLFNTIIIIFIFNTI 120
HH +LLTCV + + IF IFSH + + L ++
Sbjct: 133 HHLYLLTCVAVEKIFIFNFIFSHGLQPRGPYSSLSSMRSREDHHLHL----------QSV 192
Query: 121 AAERTIIFIFKVLLQRGSSSSAICCSQEDHHLHLQCVAAKKIIIFV-FNVVAMERIIFIF 180
AAER IF + + SSSS++CCSQEDHHL LQC + + + ERII +F
Sbjct: 193 AAERIFIFCHMLQPRGSSSSSSMCCSQEDHHLRLQCCRNGEDHLHLRLQHDTTERII-LF 252
Query: 181 VFNMTQPRGSSSSSSMWRSRNDRHLHLQCGAAETIVIFIFNVV 193
+FN+ Q + SSSSSSMWRSRNDRHLHLQCGAAETI+IFI NV+
Sbjct: 253 IFNVAQQKRSSSSSSMWRSRNDRHLHLQCGAAETIIIFILNVI 284
BLAST of IVF0002940 vs. NCBI nr
Match:
KAA0039121.1 (hypothetical protein E6C27_scaffold121G00100 [Cucumis melo var. makuwa])
HSP 1 Score: 161 bits (408), Expect = 1.28e-42
Identity = 116/226 (51.33%), Postives = 135/226 (59.73%), Query Frame = 0
Query: 1 MCCNREDFHLHLHLFTYVAVERIITFIFSHVLQSRESSSSSSHICCSQENHHFHLLTCVT 60
MCC+RED HL HLFT VA+ERII IFSHVLQ + SSS SSH+ CS+++HH HL TCV
Sbjct: 164 MCCSREDHHL--HLFTCVAIERIIISIFSHVLQLQGSSSPSSHMYCSRKDHHLHLFTCVA 223
Query: 61 AKSVIIFIFSHVIIF------------------IFLFNTIIIIFIFNTIAAERTIIFIFK 120
+ +IIFIFSHV+ + L I A ER I F F
Sbjct: 224 IERIIIFIFSHVLQLQGSSSPSSHMCYSCKDHHLHLLTCI---------AVERIINFTFS 283
Query: 121 VLLQ-RGSSS--SAICCSQEDHHLHL-QCVAAKKIIIFVFNVVAMERIIFIFVFNMTQPR 180
+LQ RGSSS S ICC QEDHHLHL CVA K+IIIF+F+ ++ Q R
Sbjct: 284 HVLQLRGSSSLSSHICCKQEDHHLHLLTCVADKRIIIFIFS-------------HVLQTR 343
Query: 181 GSSSSSS-MWRSRNDRHLHL-QCGAAETIVIFIFNVVQQRRSSSSS 202
GSSSSSS M SR D HLHL C A E I+IFIF+ V Q R SSSS
Sbjct: 344 GSSSSSSHMCCSREDHHLHLLTCVAVEKIIIFIFSHVLQSRGSSSS 365
BLAST of IVF0002940 vs. NCBI nr
Match:
KAA0033278.1 (hypothetical protein E6C27_scaffold845G00800 [Cucumis melo var. makuwa])
HSP 1 Score: 131 bits (329), Expect = 1.94e-33
Identity = 98/223 (43.95%), Postives = 119/223 (53.36%), Query Frame = 0
Query: 1 MCCN----------REDFHLHLHLFTYVAVERIITFIFSHVLQSRESSSSSSHICCSQEN 60
MCC+ RED H HL VAVERI FIFS +LQ R SS SSS +CCSQ++
Sbjct: 75 MCCHLHLCLQCEHSREDLH---HL-PCVAVERIFIFIFSLMLQPRGSSFSSS-MCCSQKD 134
Query: 61 HHFHL-LTCVTAKSVIIFIFSHVIIFIFLFNTIIIIFIFNTIAA--------------ER 120
+H H L CV AK + IFIFSHV F + ER
Sbjct: 135 NHLHFHLQCVAAKKIFIFIFSHV---------------FRLRGSSSSSSSLSSPICCMER 194
Query: 121 TIIFIFKVLLQRGSSSSAIC-CSQEDHHLHLQCVAAKKIIIFVFNVVAMERIIFIFVFNM 180
IIFIF QR SSSS+ CS++ H LHL C AA+ +I+F+F+
Sbjct: 195 IIIFIFHAAQQRRSSSSSFLRCSRDGHRLHLSCGAAETVIVFIFHA-------------- 254
Query: 181 TQPRGSSSSSSMWRSRNDRHLHLQCGAAETIVIFIFNVVQQRR 197
Q R SSSSS M RSR+ LHL CGAAET+++FIF+ QQRR
Sbjct: 255 AQQRRSSSSSFMRRSRDGHRLHLPCGAAETVIVFIFHAAQQRR 263
BLAST of IVF0002940 vs. NCBI nr
Match:
TYK02186.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 136 bits (342), Expect = 4.75e-33
Identity = 101/199 (50.75%), Postives = 121/199 (60.80%), Query Frame = 0
Query: 21 ERIITFIFSHVLQSRESSSSSSHICCSQENHHFHLLTCVTAKSVIIFIFSHVIIFIFLFN 80
+RII FIFSHVLQ R SSSSSSHICCS+E+HH HLLTCV A+ IIFIFSHV+ F +
Sbjct: 535 KRIIIFIFSHVLQPRGSSSSSSHICCSREDHHLHLLTCVAAERFIIFIFSHVLQFRGSSS 594
Query: 81 TIIIIFIFNTIAAERTIIFIFKVLLQRGSSSSAICCSQ---------EDHHLHL-QCVAA 140
+ I + E + +F SSSS +CCSQ EDHHLHL C AA
Sbjct: 595 SSFHI----CYSRENLHLNLFTYSKGSPSSSSPMCCSQKDLHLRFSQEDHHLHLLTCAAA 654
Query: 141 KKIIIFVFNVVAMERIIFIFVFNMTQPRGS-SSSSSMWRSRNDRHLH---LQCGAAETIV 200
K+IIIF+FN + Q RGS SSSS ++ SR D HLH L C +AE I+
Sbjct: 655 KRIIIFIFN--------------LLQQRGSLSSSSHIYCSREDLHLHFHLLTCVSAEKII 714
Query: 201 IFIF---NVVQQRRSSSSS 202
IFIF +V+Q R SSSSS
Sbjct: 715 IFIFIFSHVLQPRGSSSSS 715
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3DRX7 | 1.3e-74 | 87.91 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7U1J1 | 2.0e-40 | 52.58 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7TBX4 | 1.5e-35 | 53.00 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3BVC5 | 4.0e-28 | 48.39 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
A0A5A7SRV7 | 9.8e-27 | 47.00 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
TYK26477.1 | 1.16e-94 | 87.91 | hypothetical protein E5676_scaffold313G00420 [Cucumis melo var. makuwa] | [more] |
KAA0047505.1 | 9.31e-50 | 50.67 | hypothetical protein E6C27_scaffold498G001320 [Cucumis melo var. makuwa] | [more] |
KAA0039121.1 | 1.28e-42 | 51.33 | hypothetical protein E6C27_scaffold121G00100 [Cucumis melo var. makuwa] | [more] |
KAA0033278.1 | 1.94e-33 | 43.95 | hypothetical protein E6C27_scaffold845G00800 [Cucumis melo var. makuwa] | [more] |
TYK02186.1 | 4.75e-33 | 50.75 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |