IVF0002920 (gene) Melon (IVF77) v1

Overview


Name	IVF0002920
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	protein LAX PANICLE 2-like
Location	chr11: 8791449 .. 8791976 (-)
RNA-Seq Expression	IVF0002920
Synteny	IVF0002920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCCTCTTCTACTCAAGAGTGGCTAGAGTTGAGTTTAGGATTGAGATCCACAGAGAAGGAACATCAACAAAAAGAAGAAAAAGAAGATGAAAAAAGATCAAGACTCTACCAAGAGAAATTAGTTGTTTGTGGAACCACTTCTCATGAGGAAAGTGAGTATGTTAATTTGGATTTGAGGCTTCAAATAGGGCCTAATAATAAACGTAATCATTATAATATGGGAATAAGGGATTTTATGCTTCAACATCAAAGCAACAAAAAGCACTTCCGTAGTGATTATTCTTCAACCACCAACTCTGCTGGTTTGTGGTTCTCACTACTCTCTTCACCCAACAGGTCCAAACTTATAAACTCTTTTCTTCTTCTTTCTTTTTTCTTAATCTATCATATTCAAAAGAAAAGCTTTGATTTTCTTTTAAAAATCAATTGTAAAGTTCTTTTTGTTATATACAACAGTTTGATTAAACTTCTTACTTCTTTATTTTGGTTTATTATGAAGTTCTTTTTTTTTAGGTCAATGTAA

mRNA sequence

ATGGGTTCCTCTTCTACTCAAGAGTGGCTAGAGTTGAGTTTAGGATTGAGATCCACAGAGAAGGAACATCAACAAAAAGAAGAAAAAGAAGATGAAAAAAGATCAAGACTCTACCAAGAGAAATTAGTTGTTTGTGGAACCACTTCTCATGAGGAAAGTGAGTATGTTAATTTGGATTTGAGGCTTCAAATAGGGCCTAATAATAAACGTAATCATTATAATATGGGAATAAGGGATTTTATGCTTCAACATCAAAGCAACAAAAAGCACTTCCGTAGTGATTATTCTTCAACCACCAACTCTGCTGGTTTGTGGTTCTCACTACTCTCTTCACCCAACAGGTCCAAACTTATAAACTCTTTTCTTCTTCTTTCTTTTTTCTTAATCTATCATATTCAAAAGAAAAGCTTTGATTTTCTTTTAAAAATCAATTGTAAAGTTCTTTTTGTTATATACAACAGTTTGATTAAACTTCTTACTTCTTTATTTTGGTTTATTATGAAGTTCTTTTTTTTTAGGTCAATGTAA

Coding sequence (CDS)

ATGGGTTCCTCTTCTACTCAAGAGTGGCTAGAGTTGAGTTTAGGATTGAGATCCACAGAGAAGGAACATCAACAAAAAGAAGAAAAAGAAGATGAAAAAAGATCAAGACTCTACCAAGAGAAATTAGTTGTTTGTGGAACCACTTCTCATGAGGAAAGTGAGTATGTTAATTTGGATTTGAGGCTTCAAATAGGGCCTAATAATAAACGTAATCATTATAATATGGGAATAAGGGATTTTATGCTTCAACATCAAAGCAACAAAAAGCACTTCCGTAGTGATTATTCTTCAACCACCAACTCTGCTGGTTTGTGGTTCTCACTACTCTCTTCACCCAACAGGTCCAAACTTATAAACTCTTTTCTTCTTCTTTCTTTTTTCTTAATCTATCATATTCAAAAGAAAAGCTTTGATTTTCTTTTAAAAATCAATTGTAAAGTTCTTTTTGTTATATACAACAGTTTGATTAAACTTCTTACTTCTTTATTTTGGTTTATTATGAAGTTCTTTTTTTTTAGGTCAATGTAA

Protein sequence

MGSSSTQEWLELSLGLRSTEKEHQQKEEKEDEKRSRLYQEKLVVCGTTSHEESEYVNLDLRLQIGPNNKRNHYNMGIRDFMLQHQSNKKHFRSDYSSTTNSAGLWFSLLSSPNRSKLINSFLLLSFFLIYHIQKKSFDFLLKINCKVLFVIYNSLIKLLTSLFWFIMKFFFFRSM

Homology

[Close]

BLAST of IVF0002920 vs. ExPASy TrEMBL
Match: A0A0A0LR47 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G423670 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 2.2e-46
Identity = 104/118 (88.14%), Postives = 107/118 (90.68%), Query Frame = 0


Query: 1   MGSSSTQEWLELSLGLRSTEKEHQQKEEKEDEKRSRLYQEKLVVCGTTSHEESEYVNLDL 60
           MGSSSTQEWLELSLGL ST KE  QK+EKEDEKRSRLYQEKLV+CGTTSHEESEYVNLDL
Sbjct: 1   MGSSSTQEWLELSLGLGSTGKEQLQKQEKEDEKRSRLYQEKLVICGTTSHEESEYVNLDL 60

Query: 61  RLQIGPNNKRNHYNMGIRDFMLQHQSNKKHFRSDYSS-TTNSAGLWFSLLSSPNRSKL 118
           RLQIGPNNK N+ NMGIRDFMLQHQS KKHF SDYSS  TNSAGLWFSLLSSPNRS L
Sbjct: 61  RLQIGPNNKSNYCNMGIRDFMLQHQSKKKHFHSDYSSIITNSAGLWFSLLSSPNRSNL 118

[Close]

BLAST of IVF0002920 vs. ExPASy TrEMBL
Match: A0A6J1F0B3 (protein LAX PANICLE 2-like OS=Cucurbita moschata OX=3662 GN=LOC111438321 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.5e-07
Identity = 54/127 (42.52%), Postives = 67/127 (52.76%), Query Frame = 0


Query: 1   MGSSSTQEWLELSLGLRSTEKEHQQKEEKEDEKRSRLYQEKLVVCGTTSHEESEYVNLDL 60
           MGS  ++EWLELSLGLR T+K+ ++ +++EDE                  EE E  +L L
Sbjct: 1   MGSPGSKEWLELSLGLRGTKKKQEEAKKEEDE--------------MNLGEEGEGSSLSL 60

Query: 61  RLQIGPNNKRNHYNMGIRDFMLQHQSNKKHFRSDYSSTT-------------NSAGLWFS 115
           RLQIGP  K    NMGI  FM   Q+N+K     +S T              N AGLWFS
Sbjct: 61  RLQIGP--KCFDTNMGIMGFM-STQNNQKWAFHSHSLTNFPHFHGLSSPPPPNPAGLWFS 110

[Close]

BLAST of IVF0002920 vs. NCBI nr
Match: KAE8652308.1 (hypothetical protein Csa_022227 [Cucumis sativus])

HSP 1 Score: 194 bits (494), Expect = 1.25e-58
Identity = 102/115 (88.70%), Postives = 105/115 (91.30%), Query Frame = 0


Query: 1   MGSSSTQEWLELSLGLRSTEKEHQQKEEKEDEKRSRLYQEKLVVCGTTSHEESEYVNLDL 60
           MGSSSTQEWLELSLGL ST KE  QK+EKEDEKRSRLYQEKLV+CGTTSHEESEYVNLDL
Sbjct: 1   MGSSSTQEWLELSLGLGSTGKEQLQKQEKEDEKRSRLYQEKLVICGTTSHEESEYVNLDL 60

Query: 61  RLQIGPNNKRNHYNMGIRDFMLQHQSNKKHFRSDYSST-TNSAGLWFSLLSSPNR 114
           RLQIGPNNK N+ NMGIRDFMLQHQS KKHF SDYSS  TNSAGLWFSLLSSPNR
Sbjct: 61  RLQIGPNNKSNYCNMGIRDFMLQHQSKKKHFHSDYSSIITNSAGLWFSLLSSPNR 115

[Close]

BLAST of IVF0002920 vs. NCBI nr
Match: KAG6571319.1 (Protein LAX PANICLE 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 69.7 bits (169), Expect = 5.81e-11
Identity = 54/127 (42.52%), Postives = 66/127 (51.97%), Query Frame = 0


Query: 1   MGSSSTQEWLELSLGLRSTEKEHQQKEEKEDEKRSRLYQEKLVVCGTTSHEESEYVNLDL 60
           MGS  ++EWLELSLGLR T+K+ ++ +++EDE                  EE E  +L L
Sbjct: 1   MGSPGSKEWLELSLGLRGTKKKQEEAKKEEDE--------------MNLDEEGEGSSLSL 60

Query: 61  RLQIGPNNKRNHYNMGIRDFMLQHQSNKKHFRSDYSSTT-------------NSAGLWFS 114
           RLQIGP  K    NMGI  FM    + K  F S +S T              N AGLWFS
Sbjct: 61  RLQIGP--KYFDTNMGIMGFMSTQNNQKWAFHS-HSLTNFPHFHGLSSPPPPNPAGLWFS 110

[Close]

BLAST of IVF0002920 vs. NCBI nr
Match: XP_022931988.1 (protein LAX PANICLE 2-like [Cucurbita moschata])

HSP 1 Score: 68.9 bits (167), Expect = 1.13e-10
Identity = 54/127 (42.52%), Postives = 66/127 (51.97%), Query Frame = 0


Query: 1   MGSSSTQEWLELSLGLRSTEKEHQQKEEKEDEKRSRLYQEKLVVCGTTSHEESEYVNLDL 60
           MGS  ++EWLELSLGLR T+K+ ++ +++EDE                  EE E  +L L
Sbjct: 1   MGSPGSKEWLELSLGLRGTKKKQEEAKKEEDE--------------MNLGEEGEGSSLSL 60

Query: 61  RLQIGPNNKRNHYNMGIRDFMLQHQSNKKHFRSDYSSTT-------------NSAGLWFS 114
           RLQIGP  K    NMGI  FM    + K  F S +S T              N AGLWFS
Sbjct: 61  RLQIGP--KCFDTNMGIMGFMSTQNNQKWAFHS-HSLTNFPHFHGLSSPPPPNPAGLWFS 110

The following BLAST results are available for this feature:

BLAST of IVF0002920 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0002920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LR47	2.2e-46	88.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G423670 PE=4 SV=1	[more]
A0A6J1F0B3	1.5e-07	42.52	protein LAX PANICLE 2-like OS=Cucurbita moschata OX=3662 GN=LOC111438321 PE=4 SV...	[more]

BLAST of IVF0002920 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652308.1	1.25e-58	88.70	hypothetical protein Csa_022227 [Cucumis sativus]	[more]
KAG6571319.1	5.81e-11	42.52	Protein LAX PANICLE 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022931988.1	1.13e-10	42.52	protein LAX PANICLE 2-like [Cucurbita moschata]	[more]

BLAST of IVF0002920 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 16..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0002920.1	IVF0002920.1	mRNA