IVF0002905 (gene) Melon (IVF77) v1

Overview
NameIVF0002905
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionprotein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2
Locationchr07: 1933528 .. 1936049 (-)
RNA-Seq ExpressionIVF0002905
SyntenyIVF0002905
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAAACAGTGAAGCTTTTATTAAGTTCAAATGCAAGATTATCTCATAAATGTGACATTTACTCTCCGTTTGAGATCGAAAGTTTATATCCCTATCAGGATAATTAAAAAAGAATTGTATTAGTTATCCATAAAAGTGGTACTAAGTGTAATTATACCAAATTTACACGGATTGTTCTACAAAGGAAATCCCTTATCGCTGCCGCTGAGGTATACAATGAAAACGTTCGATCTCAACATCTCTTTCCGCTCGAGCTAATTGTCGTTTCTTCTTTCAATTTTCGCACCCTTTTTCTATTTCATTCTTGATTCCACTCGTTTCTCCGTTTGTGGCGTCTCAGCTGCGAGCAATGGTACTCACCAACTTCAATGGAGCTGGCGTTGGATTCGGTACGATGGGTTTAATGATCTTTAGTTCGTTGTGATATATTTTCTACATTTTTATCTTTTCTCTGTCTTTTTAACTGATTCTTGCTGTTATTCTTTTTATTTGGAGGTTTTGGTGTCGGTTGTGGGTTCGGCATAGGATGGGGTTTCGGAGGTATGTGTCAGACCCCAGTAATTAAGCATCGTTTCTTTTTCGGGCTTGGTTTTCTCATGTACCTTTGTAACTTGGGAGCTTGTTCATGATTTCAGGCTTTTTGTTTATCTGCATTGTTTCCTAGTTAGGTTGGATTTAATATATTGGCTATGTGAAGTCGGCTGAAAGGAATTTGGGAATATTATGAAATGAATGCTACAGAACCCTGAGGCTTTTGAATTATGAATTGGGAAAGATTTGTGTAAGCAACACATATCAGAAAGGGGGTTTGGGTTTGATGATTAGTTGTCTTTTGAAAATGATTTGTCATGTTCTTGTTAAGCTATAGTTGGTGCTTGGCAATGTAATGACTGGCTGGTCCGAGATATACCAAGTTAACAAGTTATTTACTTGGATTAAAATTGAGCCTTTTCTTTTGGCAAAAGTGGTGAAGATGGTGGAGTTGCTTTGTGATTGGTAGGGGCAGAACAACGAAATGTAAGGCTGCAAGTTATAACTATACTGTACTTGTAAACTCATATGCTTATGAATTGGTTACTGCTGATATATCGACATCATTGATTTAAAGATGTCTACATCTAGCCACAGACATCACTTGGAATTCCAGTGCAACCTCCAACAGCGAGTAGTTCTTGAATACCCCATGTATTATGTTTGTATCAATGTGTGTGAAATCTATCGTTAAATTTGCACTAAAAGAAGTATATATACCTGTTGGGTTTTGTCTTGTTCAATGAGAGCTTTTACATCAGTAGTCGTGGAGTATCTTGTCTTGGCTATTGAAGGATTAATAGTTTTTGAGTTTAACGCAGGGTTCTTATTGACAACTAAGCCAACCCCATGATGACCTATGGGTTTTTTAACATCGGAAGTTGGAAGGAGTCGAACACTTCCACAGATTAATTGAAAGCGTGTAAGCTGCCTTGGATACCTATAGGCAAGAATCTTGACGGGATAGAAACAAAATTCTGTGCTTCTGTTGCAACTCTTGTTTCGCTATTTTGTTTAAGATATTAGAGGAGTCTGGAACTTTAAGTTGGTCACCATCCTCGATATTCGAATGTTGTAGGACTAGATGGGTTGTTCCGTGTGATTAGTTGAGGTGCGTGTAAGCTGATTTAGACACTCACAAATATAAAAGAAAATATACGTAATACTATCTTGTTCCCACATTGCTATATAGAAGACTTCGTTTTCAGTGATCCGTTAAGATTTCTTCTGCATTAGAACTGGGTTTTAATTTCTGCAGAGTAGCCATGGAAGTTATGGTTCTGCATTTGACTTCTTAGATCCAGTTGTACATTCCATTGTCTCCCTTTAAATTTTCCAGACACATTAGTCTTTAACATGGAAGATATAGTTTTATCTGCCATTACATGCCTCACCTGAATAAAGATGTTTCTTTTACAGGAATGCCTTTGAACTTCTTGGGCCTTGGCGCGGGTAACCAACTAGAACACTCGTACCAACTATTTTCCTTAAAGACATTCATCTCATTGAGCTTTGCTTATTTATTTTGTAATCCTTTTCTGTAGGTGGTGGGTGTGGCGTTGGATTAGGACTTGGATGGGATTTGGCACAGCTTTCGGGAGTAAGTATCGGTCCTCAAGGATGATATTTCAGGGAATGGAATTCGACAGCAAGGATCAAAATCAGAGTTATGATATCAAGGACTCGAAAGATTCATCCAGAAATTCCAGAAAACTTTGAGCTTAATATCTCCCTTATTATTGGCTAGTTTAATTAAGCCTTCAGCATTTTGGGCTCTTTTGAACCCTTTTTGGATGGAATTGTGACAACATCTGATCGAATACTTGCACCGCACTACATCTGATTGTATAAAGATTACCTTTCTCTTGTCCACTAACTTTTCAGAAAAACAGTAAAGTTGGTAAAACTCCTAACCGTAAGGTCATTCACGATCTCTGCACCAATCTTCATGCGGATTGTGCTTTCAACCTGAATTACTTTGCATGGTTTCAA

mRNA sequence

GGAAACAGTGAAGCTTTTATTAAGTTCAAATGCAAGATTATCTCATAAATGTGACATTTACTCTCCGTTTGAGATCGAAAGTTTATATCCCTATCAGGATAATTAAAAAAGAATTGTATTAGTTATCCATAAAAGTGGTACTAAGTGTAATTATACCAAATTTACACGGATTGTTCTACAAAGGAAATCCCTTATCGCTGCCGCTGAGGTATACAATGAAAACGTTCGATCTCAACATCTCTTTCCGCTCGAGCTAATTGTCGTTTCTTCTTTCAATTTTCGCACCCTTTTTCTATTTCATTCTTGATTCCACTCGTTTCTCCGTTTGTGGCGTCTCAGCTGCGAGCAATGGTACTCACCAACTTCAATGGAGCTGGCGTTGGATTCGGTTTTGGTGTCGGTTGTGGGTTCGGCATAGGATGGGGTTTCGGAGGAATGCCTTTGAACTTCTTGGGCCTTGGCGCGGGTGGTGGGTGTGGCGTTGGATTAGGACTTGGATGGGATTTGGCACAGCTTTCGGGAGTAAGTATCGGTCCTCAAGGATGATATTTCAGGGAATGGAATTCGACAGCAAGGATCAAAATCAGAGTTATGATATCAAGGACTCGAAAGATTCATCCAGAAATTCCAGAAAACTTTGAGCTTAATATCTCCCTTATTATTGGCTAGTTTAATTAAGCCTTCAGCATTTTGGGCTCTTTTGAACCCTTTTTGGATGGAATTGTGACAACATCTGATCGAATACTTGCACCGCACTACATCTGATTGTATAAAGATTACCTTTCTCTTGTCCACTAACTTTTCAGAAAAACAGTAAAGTTGGTAAAACTCCTAACCGTAAGGTCATTCACGATCTCTGCACCAATCTTCATGCGGATTGTGCTTTCAACCTGAATTACTTTGCATGGTTTCAA

Coding sequence (CDS)

ATGGGGTTTCGGAGGAATGCCTTTGAACTTCTTGGGCCTTGGCGCGGGTGGTGGGTGTGGCGTTGGATTAGGACTTGGATGGGATTTGGCACAGCTTTCGGGAGTAAGTATCGGTCCTCAAGGATGATATTTCAGGGAATGGAATTCGACAGCAAGGATCAAAATCAGAGTTATGATATCAAGGACTCGAAAGATTCATCCAGAAATTCCAGAAAACTTTGA

Protein sequence

MGFRRNAFELLGPWRGWWVWRWIRTWMGFGTAFGSKYRSSRMIFQGMEFDSKDQNQSYDIKDSKDSSRNSRKL
Homology
[Close]
BLAST of IVF0002905 vs. ExPASy TrEMBL
Match: A0A1S3BTP1 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493589 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.1e-15
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0 

Query: 28 GFGTAFGSKYRSSRMIFQGMEFDSKDQNQSYDIKDSKDSSRNSRKL 74
          GFGTAFGSKYRSSRMIFQGMEFDSKDQNQSYDIKDSKDSSRNSRKL
Sbjct: 37 GFGTAFGSKYRSSRMIFQGMEFDSKDQNQSYDIKDSKDSSRNSRKL 82

[Close]
BLAST of IVF0002905 vs. ExPASy TrEMBL
Match: A0A1S3BVF8 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493589 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.1e-15
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0 

Query: 28 GFGTAFGSKYRSSRMIFQGMEFDSKDQNQSYDIKDSKDSSRNSRKL 74
          GFGTAFGSKYRSSRMIFQGMEFDSKDQNQSYDIKDSKDSSRNSRKL
Sbjct: 52 GFGTAFGSKYRSSRMIFQGMEFDSKDQNQSYDIKDSKDSSRNSRKL 97

[Close]
BLAST of IVF0002905 vs. ExPASy TrEMBL
Match: A0A0A0L0F8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642340 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.2e-13
Identity = 42/46 (91.30%), Postives = 45/46 (97.83%), Query Frame = 0 

Query: 28 GFGTAFGSKYRSSRMIFQGMEFDSKDQNQSYDIKDSKDSSRNSRKL 74
          GFGTAFGSKYRSSRMIFQGMEFD+KDQNQSYD+KDSKD SRNSRK+
Sbjct: 52 GFGTAFGSKYRSSRMIFQGMEFDNKDQNQSYDMKDSKDLSRNSRKV 97

[Close]
BLAST of IVF0002905 vs. ExPASy TrEMBL
Match: A0A6J1F9U6 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443591 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 9.4e-12
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 28 GFGTAFGSKYRSSRMIFQGMEFDSKDQNQSYDIKDSKDSSRNSRK 73
          GFGTA+GSKYRSSRMIFQGME D+KDQNQSYD KDSKD SRNSRK
Sbjct: 52 GFGTAYGSKYRSSRMIFQGMELDNKDQNQSYDSKDSKDLSRNSRK 96

[Close]
BLAST of IVF0002905 vs. ExPASy TrEMBL
Match: A0A6J1FAN4 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111443591 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 9.4e-12
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 28 GFGTAFGSKYRSSRMIFQGMEFDSKDQNQSYDIKDSKDSSRNSRK 73
          GFGTA+GSKYRSSRMIFQGME D+KDQNQSYD KDSKD SRNSRK
Sbjct: 50 GFGTAYGSKYRSSRMIFQGMELDNKDQNQSYDSKDSKDLSRNSRK 94

[Close]
BLAST of IVF0002905 vs. NCBI nr
Match: XP_008452625.1 (PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2 [Cucumis melo] >XP_008452626.1 PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 88.6 bits (218), Expect = 4.67e-21
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0 

Query: 28 GFGTAFGSKYRSSRMIFQGMEFDSKDQNQSYDIKDSKDSSRNSRKL 73
          GFGTAFGSKYRSSRMIFQGMEFDSKDQNQSYDIKDSKDSSRNSRKL
Sbjct: 37 GFGTAFGSKYRSSRMIFQGMEFDSKDQNQSYDIKDSKDSSRNSRKL 82

[Close]
BLAST of IVF0002905 vs. NCBI nr
Match: XP_008452624.1 (PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 88.6 bits (218), Expect = 7.05e-21
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0 

Query: 28 GFGTAFGSKYRSSRMIFQGMEFDSKDQNQSYDIKDSKDSSRNSRKL 73
          GFGTAFGSKYRSSRMIFQGMEFDSKDQNQSYDIKDSKDSSRNSRKL
Sbjct: 52 GFGTAFGSKYRSSRMIFQGMEFDSKDQNQSYDIKDSKDSSRNSRKL 97

[Close]
BLAST of IVF0002905 vs. NCBI nr
Match: XP_004141282.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 1.35e-18
Identity = 42/46 (91.30%), Postives = 45/46 (97.83%), Query Frame = 0 

Query: 28 GFGTAFGSKYRSSRMIFQGMEFDSKDQNQSYDIKDSKDSSRNSRKL 73
          GFGTAFGSKYRSSRMIFQGMEFD+KDQNQSYD+KDSKD SRNSRK+
Sbjct: 52 GFGTAFGSKYRSSRMIFQGMEFDNKDQNQSYDMKDSKDLSRNSRKV 97

[Close]
BLAST of IVF0002905 vs. NCBI nr
Match: KAG7024290.1 (hypothetical protein SDJN02_13104 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 77.8 bits (190), Expect = 1.66e-16
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 28  GFGTAFGSKYRSSRMIFQGMEFDSKDQNQSYDIKDSKDSSRNSRK 72
           GFGTA+GSKYRSSRMIFQGME D+KDQNQSYD KDSKD SRNSRK
Sbjct: 62  GFGTAYGSKYRSSRMIFQGMELDNKDQNQSYDCKDSKDLSRNSRK 106

[Close]
BLAST of IVF0002905 vs. NCBI nr
Match: XP_022937247.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2 [Cucurbita moschata] >XP_023535927.1 protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 77.4 bits (189), Expect = 1.72e-16
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 28 GFGTAFGSKYRSSRMIFQGMEFDSKDQNQSYDIKDSKDSSRNSRK 72
          GFGTA+GSKYRSSRMIFQGME D+KDQNQSYD KDSKD SRNSRK
Sbjct: 50 GFGTAYGSKYRSSRMIFQGMELDNKDQNQSYDSKDSKDLSRNSRK 94

[Close]
BLAST of IVF0002905 vs. TAIR 10
Match: AT1G27695.1 (glycine-rich protein )

HSP 1 Score: 40.4 bits (93), Expect = 7.1e-04
Identity = 26/66 (39.39%), Postives = 36/66 (54.55%), Query Frame = 0 

Query: 2  GFRRNAFELLGPWRGWWVWRWIRTWMGFGTAFGSKYRSSRMIFQGMEFDSKDQNQSYDIK 61
          GF      +LG   G      +    GFGTAFGS YRSSR+ FQG+E ++ D+ +     
Sbjct: 26 GFGGMPMNILGVGAGGGCGVGLGLGWGFGTAFGSHYRSSRLTFQGIELETADKREEVVAN 85

Query: 62 DSKDSS 68
           SK+S+
Sbjct: 86 MSKNST 91

[Close]
BLAST of IVF0002905 vs. TAIR 10
Match: AT1G27695.2 (glycine-rich protein )

HSP 1 Score: 40.4 bits (93), Expect = 7.1e-04
Identity = 26/66 (39.39%), Postives = 36/66 (54.55%), Query Frame = 0 

Query: 2  GFRRNAFELLGPWRGWWVWRWIRTWMGFGTAFGSKYRSSRMIFQGMEFDSKDQNQSYDIK 61
          GF      +LG   G      +    GFGTAFGS YRSSR+ FQG+E ++ D+ +     
Sbjct: 26 GFGGMPMNILGVGAGGGCGVGLGLGWGFGTAFGSHYRSSRLTFQGIELETADKREEVVAN 85

Query: 62 DSKDSS 68
           SK+S+
Sbjct: 86 MSKNST 91

The following BLAST results are available for this feature:
BLAST of IVF0002905 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0002905 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BTP14.1e-15100.00protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2 OS=Cucumis melo ... [more]
A0A1S3BVF84.1e-15100.00protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 OS=Cucumis melo ... [more]
A0A0A0L0F82.2e-1391.30Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642340 PE=4 SV=1[more]
A0A6J1F9U69.4e-1288.89protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 OS=Cucurbita mos... [more]
A0A6J1FAN49.4e-1288.89protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2 OS=Cucurbita mos... [more]
BLAST of IVF0002905 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008452625.14.67e-21100.00PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2 [Cucu... [more]
XP_008452624.17.05e-21100.00PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X1 [Cucu... [more]
XP_004141282.11.35e-1891.30protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2 [Cucumis sativus... [more]
KAG7024290.11.66e-1688.89hypothetical protein SDJN02_13104 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022937247.11.72e-1688.89protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic isoform X2 [Cucurbita mosch... [more]
BLAST of IVF0002905 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G27695.17.1e-0439.39glycine-rich protein [more]
AT1G27695.27.1e-0439.39glycine-rich protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..73
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..73

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0002905.1IVF0002905.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0043231 intracellular membrane-bounded organelle
molecular_function GO:0020037 heme binding