IVF0002867 (gene) Melon (IVF77) v1

Overview
NameIVF0002867
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionSmall nuclear ribonucleoprotein Sm D3
Locationchr07: 381431 .. 383960 (-)
RNA-Seq ExpressionIVF0002867
SyntenyIVF0002867
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTGCATTTCGCAAGTTCTAAAGGTTAAAGAGAAGGTGAGAGGGCGTTAGGGTTTTAGAGGGAGATTTGAGATTTGAGGTTTCAGATTTGTCAATTGCAGGGAGTAGCCATGAGTAGGAGCTTGGGAATTCCAGTGAAGCTACTCCATGAGGCCGCGGGCCACGTTGTATCGGTGGAGCTTAAAAGCGGTGAGCTTTACAGAGGAAGTATGATCGAGTGCGAGGATAACTGGAACTGCCAGCTCGAAAACATCACCTACACTGCTAAGGTTCCTCTCTTTTTTTATGTTTTTTTGTTGTTCATCATTCTTTTGTGCAATTTCTGTTTGTTAGTCGACTCTTTACGTTTGTTAGTTTTGGCTTTAGTTCATCTCGTACGTTCTGCTTCTTTCTTTCTAAAGCTGCCTACTTCAATATATAGTTCAAGTTCTTTTTGAATTTTGTATTAAACCTAACTTGGTGTAGTTTCCAAAAATTTGTAGCTTCAAATGCCGTGATCCCTCGTTTTCTTTGTCTTGTTTTTAATTTTAATACAAAATATGTGTAGGAAATGAAAGTAGCATCGTTCGAACGGCAGAAAATTTCCGAGAATAGAAAATGCTTCCCATGTCGTTAGTTCCAACATATAAAAGGAACAACATTTGCATTTAAACCTCACAAACCTGATATCTATGTTCCACAATAAAGCTGGGGTCTAATGAGACTGAAAATGGGAAATCAATTGTCTAATGATCCACAATGTCCAGTCCTGAGCACCACGACCCTAGTTGGCGCAGGCTTCCTAAAGGTTTTTAACATTTTGACAGGAGATGGCTTTTTTGTATCTTTTAACTTCTGGGCCTGGCTTCGTTGGTTTTGTTGCTTCTGGTTATTCTGAATCTCCAAAATGAATCTGGGACAGTATGTGAAAAGGAGATCTCTACAACTGAGTACCCAGCTTCCTCTCTATGTAAACCAAAATGCCACATTCTTGATTGCAAAAGGAATTGATTAAATCAACTATAGGGACAAATGTTAATTATGCACATTGATTCTTCCTGAGTGCACCGTTTAACTGCAACTTTCTTGTTATGCGATACACAATCACCCAGTTGAATTTGAGAGATGGGCATCATCATGGATTCATATTAATTAGAAAGAAAACATTTTCTATAAAATGTTGAGATATATCATCGTTTTCATTAACTGATCTCCCTTGTTTAAACTATTGGTGTTTTGCTTATGTTATAGTTATTGCTCAACGTCTCTGAGTTTTTTAACCCTTTGCTTGTGTGTGTATAATTGAGAGTTATGTTCTCCGGATTTACTTTATGGGTTTTCTTTTGTAGGATGGTAAGGTTTCACAACTTGAGCATGTTTTCATCCGAGGCAGCAAAGTCAGGTATCTGTACCATCTCCTTTATTATAGATTATCCAATTATTTTATTATTTCTTATTCAAGGGGTTTCTTTTAGGATTTGGTTGGCATGCTGACATACGTTCATACATGATAGGTTTATGGTCATACCAGACATGCTGAAGAATGCTCCAATGTTCAAGCGTCTTGATGCTAGAATTAAAGTATTTTCAACTCAATACCTATGAATTTTAATTCAGATGGAATCTTTGTTTGTGTTTTCTTTTTCCTAACCCATGCTTTCTGGATCTTGAAGGGTAAAGGCGCCTCACTTGGTGTTGGCAGGGGCCGGGCTGTTGCTATGCGAGCTAAAGTAAGTCCTTTGCATCTTATTTTTTGTACATCGGTTGTTTATTTCCTGGACCCATTTTGAATCATTGTGAAGAACAACTTACGTGTGCTTTGTGCATGTGTATAAAATATCTGGTTGATGTCATATTACAAGCAAAAACTGAGTGTGTCACAGAAAATTTTGTTCATTTATCGATTTCCGAAAATTGACAAGAATATCCTCTCTTTCCTAGGCTCAAGCGGCTGGCCGTGGAAGTGCACCTGGTCGGGGTGCTCCACCATCTGGCAGAAGGTGATGAAAACCATGAATATAGTTTGTTATATCCTTAGTTCAAACCCTAGAAAGTCATTGGAATATCGACCATCAAGTTTTTACTAGTTCCGGGTATTGACATCATCAACATTGAAGAGGGCTATATGCAATTGTTCATTTTGTTGAAAATGGGCGATTGACCATAATATCACCAACTTGATAATCAACTATTTACTTCAGCCCAATTTTTTTTTTTTTTGTTGAGATCAAACTTTCCTTTACCCTTCTTGTTCATCTTTGCCATGTATGTATTGGACGTTCTTTGCATCTTATCACCATAGGAGTAATGTCTTTGTGCCATTTATTCTACTTCTACCGTTGGCTGTATGTTATGGGTTGAGCTATGATTATGAGACTGCCTACACTGAAGTTGTTTTTAACATCTGCTTACAATTTACTTGGTTCGGTATTACCTTCTTCAGAACAAGGTTCCACCCTGACAATCATCACCCTTTTTGTATTCAAAACACAAGAAGTCTTAGTTTGAAAATTTAGTTCTTTTTTCAAACTAAATTTTTCGTATGAAAGGAA

mRNA sequence

GCTGCATTTCGCAAGTTCTAAAGGTTAAAGAGAAGGTGAGAGGGCGTTAGGGTTTTAGAGGGAGATTTGAGATTTGAGGTTTCAGATTTGTCAATTGCAGGGAGTAGCCATGAGTAGGAGCTTGGGAATTCCAGTGAAGCTACTCCATGAGGCCGCGGGCCACGTTGTATCGGTGGAGCTTAAAAGCGGTGAGCTTTACAGAGGAAGTATGATCGAGTGCGAGGATAACTGGAACTGCCAGCTCGAAAACATCACCTACACTGCTAAGGATGGTAAGGTTTCACAACTTGAGCATGTTTTCATCCGAGGCAGCAAAGTCAGGTTTATGGTCATACCAGACATGCTGAAGAATGCTCCAATGTTCAAGCGTCTTGATGCTAGAATTAAAGGTAAAGGCGCCTCACTTGGTGTTGGCAGGGGCCGGGCTGTTGCTATGCGAGCTAAAGCTCAAGCGGCTGGCCGTGGAAGTGCACCTGGTCGGGGTGCTCCACCATCTGGCAGAAGGTGATGAAAACCATGAATATAGTTTGTTATATCCTTAGTTCAAACCCTAGAAAGTCATTGGAATATCGACCATCAAGTTTTTACTAGTTCCGGGTATTGACATCATCAACATTGAAGAGGGCTATATGCAATTGTTCATTTTGTTGAAAATGGGCGATTGACCATAATATCACCAACTTGATAATCAACTATTTACTTCAGCCCAATTTTTTTTTTTTTTGTTGAGATCAAACTTTCCTTTACCCTTCTTGTTCATCTTTGCCATGTATGTATTGGACGTTCTTTGCATCTTATCACCATAGGAGTAATGTCTTTGTGCCATTTATTCTACTTCTACCGTTGGCTGTATGTTATGGGTTGAGCTATGATTATGAGACTGCCTACACTGAAGTTGTTTTTAACATCTGCTTACAATTTACTTGGTTCGGTATTACCTTCTTCAGAACAAGGTTCCACCCTGACAATCATCACCCTTTTTGTATTCAAAACACAAGAAGTCTTAGTTTGAAAATTTAGTTCTTTTTTCAAACTAAATTTTTCGTATGAAAGGAA

Coding sequence (CDS)

ATGAGTAGGAGCTTGGGAATTCCAGTGAAGCTACTCCATGAGGCCGCGGGCCACGTTGTATCGGTGGAGCTTAAAAGCGGTGAGCTTTACAGAGGAAGTATGATCGAGTGCGAGGATAACTGGAACTGCCAGCTCGAAAACATCACCTACACTGCTAAGGATGGTAAGGTTTCACAACTTGAGCATGTTTTCATCCGAGGCAGCAAAGTCAGGTTTATGGTCATACCAGACATGCTGAAGAATGCTCCAATGTTCAAGCGTCTTGATGCTAGAATTAAAGGTAAAGGCGCCTCACTTGGTGTTGGCAGGGGCCGGGCTGTTGCTATGCGAGCTAAAGCTCAAGCGGCTGGCCGTGGAAGTGCACCTGGTCGGGGTGCTCCACCATCTGGCAGAAGGTGA

Protein sequence

MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAPPSGRR
Homology
BLAST of IVF0002867 vs. ExPASy Swiss-Prot
Match: Q9LM92 (Small nuclear ribonucleoprotein SmD3b OS=Arabidopsis thaliana OX=3702 GN=SMD3B PE=2 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 8.6e-53
Identity = 112/133 (84.21%), Postives = 120/133 (90.23%), Query Frame = 0

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEA+GH+V+VELKSGELYRGSMIECEDNWNCQLE+ITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAK-AQAAGRG 120
           EHVFIRGSKVRFMVIPD+LK+APMFKRLDARIKGK +SLGVGRGR  AMR K A   GRG
Sbjct: 61  EHVFIRGSKVRFMVIPDILKHAPMFKRLDARIKGKSSSLGVGRGRG-AMRGKPAAGPGRG 120

Query: 121 SAPGRGAPPSGRR 133
           +  GRGA P  RR
Sbjct: 121 TG-GRGAVPPVRR 131

BLAST of IVF0002867 vs. ExPASy Swiss-Prot
Match: Q9S7E6 (Small nuclear ribonucleoprotein SmD3a OS=Arabidopsis thaliana OX=3702 GN=SMD3A PE=2 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.5e-52
Identity = 109/132 (82.58%), Postives = 115/132 (87.12%), Query Frame = 0

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHE++GH+VSVE+KSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGS VRF+VIPDMLKNAPMFK  D R KGK ASLGVGRGR  AMRAK    GRG+
Sbjct: 61  EHVFIRGSLVRFLVIPDMLKNAPMFK--DVRGKGKSASLGVGRGRGAAMRAK--GTGRGT 120

Query: 121 APGRGAPPSGRR 133
             GRGA P  RR
Sbjct: 121 GGGRGAVPPVRR 128

BLAST of IVF0002867 vs. ExPASy Swiss-Prot
Match: P62318 (Small nuclear ribonucleoprotein Sm D3 OS=Homo sapiens OX=9606 GN=SNRPD3 PE=1 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 8.9e-34
Identity = 68/122 (55.74%), Postives = 91/122 (74.59%), Query Frame = 0

Query: 4   SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHV 63
           S+G+P+K+LHEA GH+V+ E  +GE+YRG +IE EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2   SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61

Query: 64  FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPG 123
           +IRGSK+RF+++PDMLKNAPM K +    K K    G GRG+A  ++A+  A GRG   G
Sbjct: 62  YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGSGAGRGKAAILKAQVAARGRGRGMG 119

Query: 124 RG 126
           RG
Sbjct: 122 RG 119

BLAST of IVF0002867 vs. ExPASy Swiss-Prot
Match: P62320 (Small nuclear ribonucleoprotein Sm D3 OS=Mus musculus OX=10090 GN=Snrpd3 PE=1 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 8.9e-34
Identity = 68/122 (55.74%), Postives = 91/122 (74.59%), Query Frame = 0

Query: 4   SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHV 63
           S+G+P+K+LHEA GH+V+ E  +GE+YRG +IE EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2   SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61

Query: 64  FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPG 123
           +IRGSK+RF+++PDMLKNAPM K +    K K    G GRG+A  ++A+  A GRG   G
Sbjct: 62  YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGSGAGRGKAAILKAQVAARGRGRGMG 119

Query: 124 RG 126
           RG
Sbjct: 122 RG 119

BLAST of IVF0002867 vs. ExPASy Swiss-Prot
Match: P62323 (Small nuclear ribonucleoprotein Sm D3 OS=Xenopus laevis OX=8355 GN=snrpd3 PE=2 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 8.9e-34
Identity = 68/122 (55.74%), Postives = 91/122 (74.59%), Query Frame = 0

Query: 4   SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHV 63
           S+G+P+K+LHEA GH+V+ E  +GE+YRG +IE EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2   SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61

Query: 64  FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPG 123
           +IRGSK+RF+++PDMLKNAPM K +    K K    G GRG+A  ++A+  A GRG   G
Sbjct: 62  YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGSGAGRGKAAILKAQVAARGRGRGMG 119

Query: 124 RG 126
           RG
Sbjct: 122 RG 119

BLAST of IVF0002867 vs. ExPASy TrEMBL
Match: A0A5D3D8Q1 (Small nuclear ribonucleoprotein Sm D3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00680 PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.0e-65
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 44  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 103

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS
Sbjct: 104 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 163

Query: 121 APGRGAPPSGRR 133
           APGRGAPPSGRR
Sbjct: 164 APGRGAPPSGRR 175

BLAST of IVF0002867 vs. ExPASy TrEMBL
Match: A0A1S3BVV0 (Small nuclear ribonucleoprotein Sm D3 OS=Cucumis melo OX=3656 GN=LOC103493808 PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.0e-65
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120

Query: 121 APGRGAPPSGRR 133
           APGRGAPPSGRR
Sbjct: 121 APGRGAPPSGRR 132

BLAST of IVF0002867 vs. ExPASy TrEMBL
Match: A0A0A0L5W4 (Small nuclear ribonucleoprotein Sm D3 OS=Cucumis sativus OX=3659 GN=Csa_4G658560 PE=3 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.0e-64
Identity = 131/132 (99.24%), Postives = 131/132 (99.24%), Query Frame = 0

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGSKV FMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS
Sbjct: 61  EHVFIRGSKVSFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120

Query: 121 APGRGAPPSGRR 133
           APGRGAPPSGRR
Sbjct: 121 APGRGAPPSGRR 132

BLAST of IVF0002867 vs. ExPASy TrEMBL
Match: A0A6J1DDX8 (Small nuclear ribonucleoprotein Sm D3 OS=Momordica charantia OX=3673 GN=LOC111019638 PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 9.5e-63
Identity = 129/132 (97.73%), Postives = 129/132 (97.73%), Query Frame = 0

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120

Query: 121 APGRGAPPSGRR 133
           A GRGA PS RR
Sbjct: 121 ATGRGAMPSARR 132

BLAST of IVF0002867 vs. ExPASy TrEMBL
Match: A0A6J1IBE9 (Small nuclear ribonucleoprotein Sm D3 OS=Cucurbita maxima OX=3661 GN=LOC111473626 PE=3 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 2.8e-62
Identity = 128/132 (96.97%), Postives = 128/132 (96.97%), Query Frame = 0

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRG 
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120

Query: 121 APGRGAPPSGRR 133
           A GRGA PS RR
Sbjct: 121 ATGRGAVPSARR 132

BLAST of IVF0002867 vs. NCBI nr
Match: XP_008452950.1 (PREDICTED: small nuclear ribonucleoprotein SmD3a-like [Cucumis melo])

HSP 1 Score: 256 bits (653), Expect = 1.16e-85
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120

Query: 121 APGRGAPPSGRR 132
           APGRGAPPSGRR
Sbjct: 121 APGRGAPPSGRR 132

BLAST of IVF0002867 vs. NCBI nr
Match: KAA0064637.1 (small nuclear ribonucleoprotein SmD3a-like [Cucumis melo var. makuwa] >TYK19955.1 small nuclear ribonucleoprotein SmD3a-like [Cucumis melo var. makuwa])

HSP 1 Score: 256 bits (653), Expect = 4.96e-85
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 44  MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 103

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS
Sbjct: 104 EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 163

Query: 121 APGRGAPPSGRR 132
           APGRGAPPSGRR
Sbjct: 164 APGRGAPPSGRR 175

BLAST of IVF0002867 vs. NCBI nr
Match: XP_004145538.1 (small nuclear ribonucleoprotein SmD3a [Cucumis sativus] >KGN55496.1 hypothetical protein Csa_012724 [Cucumis sativus])

HSP 1 Score: 253 bits (647), Expect = 9.55e-85
Identity = 131/132 (99.24%), Postives = 131/132 (99.24%), Query Frame = 0

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGSKV FMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS
Sbjct: 61  EHVFIRGSKVSFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120

Query: 121 APGRGAPPSGRR 132
           APGRGAPPSGRR
Sbjct: 121 APGRGAPPSGRR 132

BLAST of IVF0002867 vs. NCBI nr
Match: XP_038896140.1 (small nuclear ribonucleoprotein SmD3a-like [Benincasa hispida])

HSP 1 Score: 253 bits (645), Expect = 1.93e-84
Identity = 131/132 (99.24%), Postives = 131/132 (99.24%), Query Frame = 0

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120

Query: 121 APGRGAPPSGRR 132
           APGRGA PSGRR
Sbjct: 121 APGRGAAPSGRR 132

BLAST of IVF0002867 vs. NCBI nr
Match: XP_022151728.1 (small nuclear ribonucleoprotein SmD3b-like [Momordica charantia] >XP_022151729.1 small nuclear ribonucleoprotein SmD3b-like [Momordica charantia] >XP_022151731.1 small nuclear ribonucleoprotein SmD3b-like [Momordica charantia])

HSP 1 Score: 247 bits (630), Expect = 3.74e-82
Identity = 129/132 (97.73%), Postives = 129/132 (97.73%), Query Frame = 0

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120

Query: 121 APGRGAPPSGRR 132
           A GRGA PS RR
Sbjct: 121 ATGRGAMPSARR 132

BLAST of IVF0002867 vs. TAIR 10
Match: AT1G20580.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 207.6 bits (527), Expect = 6.1e-54
Identity = 112/133 (84.21%), Postives = 120/133 (90.23%), Query Frame = 0

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEA+GH+V+VELKSGELYRGSMIECEDNWNCQLE+ITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAK-AQAAGRG 120
           EHVFIRGSKVRFMVIPD+LK+APMFKRLDARIKGK +SLGVGRGR  AMR K A   GRG
Sbjct: 61  EHVFIRGSKVRFMVIPDILKHAPMFKRLDARIKGKSSSLGVGRGRG-AMRGKPAAGPGRG 120

Query: 121 SAPGRGAPPSGRR 133
           +  GRGA P  RR
Sbjct: 121 TG-GRGAVPPVRR 131

BLAST of IVF0002867 vs. TAIR 10
Match: AT1G76300.1 (snRNP core protein SMD3 )

HSP 1 Score: 206.1 bits (523), Expect = 1.8e-53
Identity = 109/132 (82.58%), Postives = 115/132 (87.12%), Query Frame = 0

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHE++GH+VSVE+KSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120
           EHVFIRGS VRF+VIPDMLKNAPMFK  D R KGK ASLGVGRGR  AMRAK    GRG+
Sbjct: 61  EHVFIRGSLVRFLVIPDMLKNAPMFK--DVRGKGKSASLGVGRGRGAAMRAK--GTGRGT 120

Query: 121 APGRGAPPSGRR 133
             GRGA P  RR
Sbjct: 121 GGGRGAVPPVRR 128

BLAST of IVF0002867 vs. TAIR 10
Match: AT5G27720.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 63.5 bits (153), Expect = 1.4e-10
Identity = 39/119 (32.77%), Postives = 67/119 (56.30%), Query Frame = 0

Query: 7   IPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDG-KVSQLEHVFI 66
           +P+ LL  A GH + VELK+GE Y G ++ C+   N  L  +  T+KDG +  ++   +I
Sbjct: 2   LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61

Query: 67  RGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPGR 125
           RG+ ++++ +PD + +    ++   R   K   +G GRGR V     A+  GRG++ G+
Sbjct: 62  RGNTIKYLRVPDEVIDKVQEEK--TRTDRKPPGVGRGRGRGVD-DGGARGRGRGTSMGK 117

BLAST of IVF0002867 vs. TAIR 10
Match: AT3G07590.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 53.9 bits (128), Expect = 1.1e-07
Identity = 35/121 (28.93%), Postives = 59/121 (48.76%), Query Frame = 0

Query: 9   VKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
           V+ L +     VS+ELK+G +  G++   + + N  L+ +  + K      L+H+ +RG+
Sbjct: 4   VRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSLRGN 63

Query: 69  KVRFMVIPDMLKNAPMFKRLDARIKGK----GASLGVGRGRAVAMRAKAQAAGRGSAPGR 126
            +R+ ++PD L    +      R+K K    G ++G GRGR           GRG   GR
Sbjct: 64  NIRYYILPDSLNLETLLVEDTPRVKPKKPVAGKAVGRGRGR-----------GRGRGRGR 113

BLAST of IVF0002867 vs. TAIR 10
Match: AT3G07590.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 53.9 bits (128), Expect = 1.1e-07
Identity = 35/121 (28.93%), Postives = 59/121 (48.76%), Query Frame = 0

Query: 9   VKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
           V+ L +     VS+ELK+G +  G++   + + N  L+ +  + K      L+H+ +RG+
Sbjct: 4   VRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSLRGN 63

Query: 69  KVRFMVIPDMLKNAPMFKRLDARIKGK----GASLGVGRGRAVAMRAKAQAAGRGSAPGR 126
            +R+ ++PD L    +      R+K K    G ++G GRGR           GRG   GR
Sbjct: 64  NIRYYILPDSLNLETLLVEDTPRVKPKKPVAGKAVGRGRGR-----------GRGRGRGR 113

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9LM928.6e-5384.21Small nuclear ribonucleoprotein SmD3b OS=Arabidopsis thaliana OX=3702 GN=SMD3B P... [more]
Q9S7E62.5e-5282.58Small nuclear ribonucleoprotein SmD3a OS=Arabidopsis thaliana OX=3702 GN=SMD3A P... [more]
P623188.9e-3455.74Small nuclear ribonucleoprotein Sm D3 OS=Homo sapiens OX=9606 GN=SNRPD3 PE=1 SV=... [more]
P623208.9e-3455.74Small nuclear ribonucleoprotein Sm D3 OS=Mus musculus OX=10090 GN=Snrpd3 PE=1 SV... [more]
P623238.9e-3455.74Small nuclear ribonucleoprotein Sm D3 OS=Xenopus laevis OX=8355 GN=snrpd3 PE=2 S... [more]
Match NameE-valueIdentityDescription
A0A5D3D8Q12.0e-65100.00Small nuclear ribonucleoprotein Sm D3 OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A1S3BVV02.0e-65100.00Small nuclear ribonucleoprotein Sm D3 OS=Cucumis melo OX=3656 GN=LOC103493808 PE... [more]
A0A0A0L5W41.0e-6499.24Small nuclear ribonucleoprotein Sm D3 OS=Cucumis sativus OX=3659 GN=Csa_4G658560... [more]
A0A6J1DDX89.5e-6397.73Small nuclear ribonucleoprotein Sm D3 OS=Momordica charantia OX=3673 GN=LOC11101... [more]
A0A6J1IBE92.8e-6296.97Small nuclear ribonucleoprotein Sm D3 OS=Cucurbita maxima OX=3661 GN=LOC11147362... [more]
Match NameE-valueIdentityDescription
XP_008452950.11.16e-85100.00PREDICTED: small nuclear ribonucleoprotein SmD3a-like [Cucumis melo][more]
KAA0064637.14.96e-85100.00small nuclear ribonucleoprotein SmD3a-like [Cucumis melo var. makuwa] >TYK19955.... [more]
XP_004145538.19.55e-8599.24small nuclear ribonucleoprotein SmD3a [Cucumis sativus] >KGN55496.1 hypothetical... [more]
XP_038896140.11.93e-8499.24small nuclear ribonucleoprotein SmD3a-like [Benincasa hispida][more]
XP_022151728.13.74e-8297.73small nuclear ribonucleoprotein SmD3b-like [Momordica charantia] >XP_022151729.1... [more]
Match NameE-valueIdentityDescription
AT1G20580.16.1e-5484.21Small nuclear ribonucleoprotein family protein [more]
AT1G76300.11.8e-5382.58snRNP core protein SMD3 [more]
AT5G27720.11.4e-1032.77Small nuclear ribonucleoprotein family protein [more]
AT3G07590.11.1e-0728.93Small nuclear ribonucleoprotein family protein [more]
AT3G07590.21.1e-0728.93Small nuclear ribonucleoprotein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 10..75
e-value: 5.2E-17
score: 72.5
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 11..74
e-value: 3.6E-15
score: 55.4
NoneNo IPR availableGENE3D2.30.30.100coord: 3..86
e-value: 1.6E-32
score: 112.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 111..132
NoneNo IPR availablePANTHERPTHR23338:SF54SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3coord: 1..128
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3PANTHERPTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMcoord: 1..128
IPR034099Small nuclear ribonucleoprotein Sm D3CDDcd01721Sm_D3coord: 8..77
e-value: 2.26783E-48
score: 147.668
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 8..128

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0002867.2IVF0002867.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006396 RNA processing
biological_process GO:0000387 spliceosomal snRNP assembly
cellular_component GO:0071013 catalytic step 2 spliceosome
cellular_component GO:0000243 commitment complex
cellular_component GO:0005829 cytosol
cellular_component GO:0034715 pICln-Sm protein complex
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0034719 SMN-Sm protein complex
cellular_component GO:0097526 spliceosomal tri-snRNP complex
cellular_component GO:0005689 U12-type spliceosomal complex
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0005686 U2 snRNP
cellular_component GO:0005687 U4 snRNP
cellular_component GO:0005682 U5 snRNP
cellular_component GO:0005681 spliceosomal complex
molecular_function GO:0003723 RNA binding