IVF0002867 (gene) Melon (IVF77) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GCTGCATTTCGCAAGTTCTAAAGGTTAAAGAGAAGGTGAGAGGGCGTTAGGGTTTTAGAGGGAGATTTGAGATTTGAGGTTTCAGATTTGTCAATTGCAGGGAGTAGCCATGAGTAGGAGCTTGGGAATTCCAGTGAAGCTACTCCATGAGGCCGCGGGCCACGTTGTATCGGTGGAGCTTAAAAGCGGTGAGCTTTACAGAGGAAGTATGATCGAGTGCGAGGATAACTGGAACTGCCAGCTCGAAAACATCACCTACACTGCTAAGGTTCCTCTCTTTTTTTATGTTTTTTTGTTGTTCATCATTCTTTTGTGCAATTTCTGTTTGTTAGTCGACTCTTTACGTTTGTTAGTTTTGGCTTTAGTTCATCTCGTACGTTCTGCTTCTTTCTTTCTAAAGCTGCCTACTTCAATATATAGTTCAAGTTCTTTTTGAATTTTGTATTAAACCTAACTTGGTGTAGTTTCCAAAAATTTGTAGCTTCAAATGCCGTGATCCCTCGTTTTCTTTGTCTTGTTTTTAATTTTAATACAAAATATGTGTAGGAAATGAAAGTAGCATCGTTCGAACGGCAGAAAATTTCCGAGAATAGAAAATGCTTCCCATGTCGTTAGTTCCAACATATAAAAGGAACAACATTTGCATTTAAACCTCACAAACCTGATATCTATGTTCCACAATAAAGCTGGGGTCTAATGAGACTGAAAATGGGAAATCAATTGTCTAATGATCCACAATGTCCAGTCCTGAGCACCACGACCCTAGTTGGCGCAGGCTTCCTAAAGGTTTTTAACATTTTGACAGGAGATGGCTTTTTTGTATCTTTTAACTTCTGGGCCTGGCTTCGTTGGTTTTGTTGCTTCTGGTTATTCTGAATCTCCAAAATGAATCTGGGACAGTATGTGAAAAGGAGATCTCTACAACTGAGTACCCAGCTTCCTCTCTATGTAAACCAAAATGCCACATTCTTGATTGCAAAAGGAATTGATTAAATCAACTATAGGGACAAATGTTAATTATGCACATTGATTCTTCCTGAGTGCACCGTTTAACTGCAACTTTCTTGTTATGCGATACACAATCACCCAGTTGAATTTGAGAGATGGGCATCATCATGGATTCATATTAATTAGAAAGAAAACATTTTCTATAAAATGTTGAGATATATCATCGTTTTCATTAACTGATCTCCCTTGTTTAAACTATTGGTGTTTTGCTTATGTTATAGTTATTGCTCAACGTCTCTGAGTTTTTTAACCCTTTGCTTGTGTGTGTATAATTGAGAGTTATGTTCTCCGGATTTACTTTATGGGTTTTCTTTTGTAGGATGGTAAGGTTTCACAACTTGAGCATGTTTTCATCCGAGGCAGCAAAGTCAGGTATCTGTACCATCTCCTTTATTATAGATTATCCAATTATTTTATTATTTCTTATTCAAGGGGTTTCTTTTAGGATTTGGTTGGCATGCTGACATACGTTCATACATGATAGGTTTATGGTCATACCAGACATGCTGAAGAATGCTCCAATGTTCAAGCGTCTTGATGCTAGAATTAAAGTATTTTCAACTCAATACCTATGAATTTTAATTCAGATGGAATCTTTGTTTGTGTTTTCTTTTTCCTAACCCATGCTTTCTGGATCTTGAAGGGTAAAGGCGCCTCACTTGGTGTTGGCAGGGGCCGGGCTGTTGCTATGCGAGCTAAAGTAAGTCCTTTGCATCTTATTTTTTGTACATCGGTTGTTTATTTCCTGGACCCATTTTGAATCATTGTGAAGAACAACTTACGTGTGCTTTGTGCATGTGTATAAAATATCTGGTTGATGTCATATTACAAGCAAAAACTGAGTGTGTCACAGAAAATTTTGTTCATTTATCGATTTCCGAAAATTGACAAGAATATCCTCTCTTTCCTAGGCTCAAGCGGCTGGCCGTGGAAGTGCACCTGGTCGGGGTGCTCCACCATCTGGCAGAAGGTGATGAAAACCATGAATATAGTTTGTTATATCCTTAGTTCAAACCCTAGAAAGTCATTGGAATATCGACCATCAAGTTTTTACTAGTTCCGGGTATTGACATCATCAACATTGAAGAGGGCTATATGCAATTGTTCATTTTGTTGAAAATGGGCGATTGACCATAATATCACCAACTTGATAATCAACTATTTACTTCAGCCCAATTTTTTTTTTTTTTGTTGAGATCAAACTTTCCTTTACCCTTCTTGTTCATCTTTGCCATGTATGTATTGGACGTTCTTTGCATCTTATCACCATAGGAGTAATGTCTTTGTGCCATTTATTCTACTTCTACCGTTGGCTGTATGTTATGGGTTGAGCTATGATTATGAGACTGCCTACACTGAAGTTGTTTTTAACATCTGCTTACAATTTACTTGGTTCGGTATTACCTTCTTCAGAACAAGGTTCCACCCTGACAATCATCACCCTTTTTGTATTCAAAACACAAGAAGTCTTAGTTTGAAAATTTAGTTCTTTTTTCAAACTAAATTTTTCGTATGAAAGGAA GCTGCATTTCGCAAGTTCTAAAGGTTAAAGAGAAGGTGAGAGGGCGTTAGGGTTTTAGAGGGAGATTTGAGATTTGAGGTTTCAGATTTGTCAATTGCAGGGAGTAGCCATGAGTAGGAGCTTGGGAATTCCAGTGAAGCTACTCCATGAGGCCGCGGGCCACGTTGTATCGGTGGAGCTTAAAAGCGGTGAGCTTTACAGAGGAAGTATGATCGAGTGCGAGGATAACTGGAACTGCCAGCTCGAAAACATCACCTACACTGCTAAGGATGGTAAGGTTTCACAACTTGAGCATGTTTTCATCCGAGGCAGCAAAGTCAGGTTTATGGTCATACCAGACATGCTGAAGAATGCTCCAATGTTCAAGCGTCTTGATGCTAGAATTAAAGGTAAAGGCGCCTCACTTGGTGTTGGCAGGGGCCGGGCTGTTGCTATGCGAGCTAAAGCTCAAGCGGCTGGCCGTGGAAGTGCACCTGGTCGGGGTGCTCCACCATCTGGCAGAAGGTGATGAAAACCATGAATATAGTTTGTTATATCCTTAGTTCAAACCCTAGAAAGTCATTGGAATATCGACCATCAAGTTTTTACTAGTTCCGGGTATTGACATCATCAACATTGAAGAGGGCTATATGCAATTGTTCATTTTGTTGAAAATGGGCGATTGACCATAATATCACCAACTTGATAATCAACTATTTACTTCAGCCCAATTTTTTTTTTTTTTGTTGAGATCAAACTTTCCTTTACCCTTCTTGTTCATCTTTGCCATGTATGTATTGGACGTTCTTTGCATCTTATCACCATAGGAGTAATGTCTTTGTGCCATTTATTCTACTTCTACCGTTGGCTGTATGTTATGGGTTGAGCTATGATTATGAGACTGCCTACACTGAAGTTGTTTTTAACATCTGCTTACAATTTACTTGGTTCGGTATTACCTTCTTCAGAACAAGGTTCCACCCTGACAATCATCACCCTTTTTGTATTCAAAACACAAGAAGTCTTAGTTTGAAAATTTAGTTCTTTTTTCAAACTAAATTTTTCGTATGAAAGGAA ATGAGTAGGAGCTTGGGAATTCCAGTGAAGCTACTCCATGAGGCCGCGGGCCACGTTGTATCGGTGGAGCTTAAAAGCGGTGAGCTTTACAGAGGAAGTATGATCGAGTGCGAGGATAACTGGAACTGCCAGCTCGAAAACATCACCTACACTGCTAAGGATGGTAAGGTTTCACAACTTGAGCATGTTTTCATCCGAGGCAGCAAAGTCAGGTTTATGGTCATACCAGACATGCTGAAGAATGCTCCAATGTTCAAGCGTCTTGATGCTAGAATTAAAGGTAAAGGCGCCTCACTTGGTGTTGGCAGGGGCCGGGCTGTTGCTATGCGAGCTAAAGCTCAAGCGGCTGGCCGTGGAAGTGCACCTGGTCGGGGTGCTCCACCATCTGGCAGAAGGTGA MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGSAPGRGAPPSGRR Homology
BLAST of IVF0002867 vs. ExPASy Swiss-Prot
Match: Q9LM92 (Small nuclear ribonucleoprotein SmD3b OS=Arabidopsis thaliana OX=3702 GN=SMD3B PE=2 SV=1) HSP 1 Score: 207.6 bits (527), Expect = 8.6e-53 Identity = 112/133 (84.21%), Postives = 120/133 (90.23%), Query Frame = 0
BLAST of IVF0002867 vs. ExPASy Swiss-Prot
Match: Q9S7E6 (Small nuclear ribonucleoprotein SmD3a OS=Arabidopsis thaliana OX=3702 GN=SMD3A PE=2 SV=1) HSP 1 Score: 206.1 bits (523), Expect = 2.5e-52 Identity = 109/132 (82.58%), Postives = 115/132 (87.12%), Query Frame = 0
BLAST of IVF0002867 vs. ExPASy Swiss-Prot
Match: P62318 (Small nuclear ribonucleoprotein Sm D3 OS=Homo sapiens OX=9606 GN=SNRPD3 PE=1 SV=1) HSP 1 Score: 144.4 bits (363), Expect = 8.9e-34 Identity = 68/122 (55.74%), Postives = 91/122 (74.59%), Query Frame = 0
BLAST of IVF0002867 vs. ExPASy Swiss-Prot
Match: P62320 (Small nuclear ribonucleoprotein Sm D3 OS=Mus musculus OX=10090 GN=Snrpd3 PE=1 SV=1) HSP 1 Score: 144.4 bits (363), Expect = 8.9e-34 Identity = 68/122 (55.74%), Postives = 91/122 (74.59%), Query Frame = 0
BLAST of IVF0002867 vs. ExPASy Swiss-Prot
Match: P62323 (Small nuclear ribonucleoprotein Sm D3 OS=Xenopus laevis OX=8355 GN=snrpd3 PE=2 SV=1) HSP 1 Score: 144.4 bits (363), Expect = 8.9e-34 Identity = 68/122 (55.74%), Postives = 91/122 (74.59%), Query Frame = 0
BLAST of IVF0002867 vs. ExPASy TrEMBL
Match: A0A5D3D8Q1 (Small nuclear ribonucleoprotein Sm D3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00680 PE=3 SV=1) HSP 1 Score: 258.1 bits (658), Expect = 2.0e-65 Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0
BLAST of IVF0002867 vs. ExPASy TrEMBL
Match: A0A1S3BVV0 (Small nuclear ribonucleoprotein Sm D3 OS=Cucumis melo OX=3656 GN=LOC103493808 PE=3 SV=1) HSP 1 Score: 258.1 bits (658), Expect = 2.0e-65 Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0
BLAST of IVF0002867 vs. ExPASy TrEMBL
Match: A0A0A0L5W4 (Small nuclear ribonucleoprotein Sm D3 OS=Cucumis sativus OX=3659 GN=Csa_4G658560 PE=3 SV=1) HSP 1 Score: 255.8 bits (652), Expect = 1.0e-64 Identity = 131/132 (99.24%), Postives = 131/132 (99.24%), Query Frame = 0
BLAST of IVF0002867 vs. ExPASy TrEMBL
Match: A0A6J1DDX8 (Small nuclear ribonucleoprotein Sm D3 OS=Momordica charantia OX=3673 GN=LOC111019638 PE=3 SV=1) HSP 1 Score: 249.2 bits (635), Expect = 9.5e-63 Identity = 129/132 (97.73%), Postives = 129/132 (97.73%), Query Frame = 0
BLAST of IVF0002867 vs. ExPASy TrEMBL
Match: A0A6J1IBE9 (Small nuclear ribonucleoprotein Sm D3 OS=Cucurbita maxima OX=3661 GN=LOC111473626 PE=3 SV=1) HSP 1 Score: 247.7 bits (631), Expect = 2.8e-62 Identity = 128/132 (96.97%), Postives = 128/132 (96.97%), Query Frame = 0
BLAST of IVF0002867 vs. NCBI nr
Match: XP_008452950.1 (PREDICTED: small nuclear ribonucleoprotein SmD3a-like [Cucumis melo]) HSP 1 Score: 256 bits (653), Expect = 1.16e-85 Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0
BLAST of IVF0002867 vs. NCBI nr
Match: KAA0064637.1 (small nuclear ribonucleoprotein SmD3a-like [Cucumis melo var. makuwa] >TYK19955.1 small nuclear ribonucleoprotein SmD3a-like [Cucumis melo var. makuwa]) HSP 1 Score: 256 bits (653), Expect = 4.96e-85 Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0
BLAST of IVF0002867 vs. NCBI nr
Match: XP_004145538.1 (small nuclear ribonucleoprotein SmD3a [Cucumis sativus] >KGN55496.1 hypothetical protein Csa_012724 [Cucumis sativus]) HSP 1 Score: 253 bits (647), Expect = 9.55e-85 Identity = 131/132 (99.24%), Postives = 131/132 (99.24%), Query Frame = 0
BLAST of IVF0002867 vs. NCBI nr
Match: XP_038896140.1 (small nuclear ribonucleoprotein SmD3a-like [Benincasa hispida]) HSP 1 Score: 253 bits (645), Expect = 1.93e-84 Identity = 131/132 (99.24%), Postives = 131/132 (99.24%), Query Frame = 0
BLAST of IVF0002867 vs. NCBI nr
Match: XP_022151728.1 (small nuclear ribonucleoprotein SmD3b-like [Momordica charantia] >XP_022151729.1 small nuclear ribonucleoprotein SmD3b-like [Momordica charantia] >XP_022151731.1 small nuclear ribonucleoprotein SmD3b-like [Momordica charantia]) HSP 1 Score: 247 bits (630), Expect = 3.74e-82 Identity = 129/132 (97.73%), Postives = 129/132 (97.73%), Query Frame = 0
BLAST of IVF0002867 vs. TAIR 10
Match: AT1G20580.1 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 207.6 bits (527), Expect = 6.1e-54 Identity = 112/133 (84.21%), Postives = 120/133 (90.23%), Query Frame = 0
BLAST of IVF0002867 vs. TAIR 10
Match: AT1G76300.1 (snRNP core protein SMD3 ) HSP 1 Score: 206.1 bits (523), Expect = 1.8e-53 Identity = 109/132 (82.58%), Postives = 115/132 (87.12%), Query Frame = 0
BLAST of IVF0002867 vs. TAIR 10
Match: AT5G27720.1 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 63.5 bits (153), Expect = 1.4e-10 Identity = 39/119 (32.77%), Postives = 67/119 (56.30%), Query Frame = 0
BLAST of IVF0002867 vs. TAIR 10
Match: AT3G07590.1 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 53.9 bits (128), Expect = 1.1e-07 Identity = 35/121 (28.93%), Postives = 59/121 (48.76%), Query Frame = 0
BLAST of IVF0002867 vs. TAIR 10
Match: AT3G07590.2 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 53.9 bits (128), Expect = 1.1e-07 Identity = 35/121 (28.93%), Postives = 59/121 (48.76%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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