IVF0002842 (gene) Melon (IVF77) v1

Overview


Name	IVF0002842
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag/pol protein
Location	chr12: 12315114 .. 12315702 (-)
RNA-Seq Expression	IVF0002842
Synteny	IVF0002842

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGAAACCACTGGAAATGCACTTGCAGCGAAGGAAACGGGCTATGCACGAGGAGATCCGGTGTACATCCCAAGAAAATCTGAGAGAGAATGCCTCAAAGTCATTTTTCTCGTCATAGGGTAAAAAGTGGTCTCCGACGGTTTCTTCCTTTTGCTTCGTATTGGTCATAAGTCTTTTCATTTTCAGGGCTCGTACTCTGAGGACCTCAACCCACACTCCTGGCATACCCCCTGACACAATTTCTCAAGGTATAGGTCGGGAAGCGAGTTGGTTGGAGGGAGAACTAATGTTCGACCCAAAATTGTCCAAAAGATGGCCAATGCTTCCAAGGAGTAGCGAACGCTCCTCCGGTGTCAGAAACCACTGGAAATCAACGTGTAGCAAAGGAAATGGGTTGAGCTCGAGGACTTTCGATGTTCGTCCCCAGAAAACACGAGTGGGAATGCCCCAAACTCAGTTTTCTCGTCCTAGGGTAAAAAGCGATCCTCGACGGTTTCTTCCCTTTGCTTCATATTGGTCACAAGTCATTCGATCTTCGAGACTCGTACTCCTAGGACTTCAACCCACACTCCTGAAATGCTCCTAG

mRNA sequence

ATGTCAGAAACCACTGGAAATGCACTTGCAGCGAAGGAAACGGGCTATGCACGAGGAGATCCGGTGTACATCCCAAGAAAATCTGAGAGAGAATGCCTCAAAGTCATTTTTCTCGTCATAGGGGCTCGTACTCTGAGGACCTCAACCCACACTCCTGGCATACCCCCTGACACAATTTCTCAAGGTATAGGTCGGGAAGCGAGTTGGTTGGAGGGAGAACTAATGTTCGACCCAAAATTGTCCAAAAGATGGCCAATGCTTCCAAGGAGTAGCGAACGCTCCTCCGGTGTCAGAAACCACTGGAAATCAACGTGTAGCAAAGGAAATGGGTTGAGCTCGAGGACTTTCGATGTTCGTCCCCAGAAAACACGAGTGGGAATGCCCCAAACTCAGTTTTCTCGTCCTAGGGTAAAAAGCGATCCTCGACGGTTTCTTCCCTTTGCTTCATATTGGTCACAAGTCATTCGATCTTCGAGACTCGTACTCCTAGGACTTCAACCCACACTCCTGAAATGCTCCTAG

Coding sequence (CDS)

ATGTCAGAAACCACTGGAAATGCACTTGCAGCGAAGGAAACGGGCTATGCACGAGGAGATCCGGTGTACATCCCAAGAAAATCTGAGAGAGAATGCCTCAAAGTCATTTTTCTCGTCATAGGGGCTCGTACTCTGAGGACCTCAACCCACACTCCTGGCATACCCCCTGACACAATTTCTCAAGGTATAGGTCGGGAAGCGAGTTGGTTGGAGGGAGAACTAATGTTCGACCCAAAATTGTCCAAAAGATGGCCAATGCTTCCAAGGAGTAGCGAACGCTCCTCCGGTGTCAGAAACCACTGGAAATCAACGTGTAGCAAAGGAAATGGGTTGAGCTCGAGGACTTTCGATGTTCGTCCCCAGAAAACACGAGTGGGAATGCCCCAAACTCAGTTTTCTCGTCCTAGGGTAAAAAGCGATCCTCGACGGTTTCTTCCCTTTGCTTCATATTGGTCACAAGTCATTCGATCTTCGAGACTCGTACTCCTAGGACTTCAACCCACACTCCTGAAATGCTCCTAG

Protein sequence

MSETTGNALAAKETGYARGDPVYIPRKSERECLKVIFLVIGARTLRTSTHTPGIPPDTISQGIGREASWLEGELMFDPKLSKRWPMLPRSSERSSGVRNHWKSTCSKGNGLSSRTFDVRPQKTRVGMPQTQFSRPRVKSDPRRFLPFASYWSQVIRSSRLVLLGLQPTLLKCS

Homology

[Close]

BLAST of IVF0002842 vs. ExPASy TrEMBL
Match: A0A5A7V368 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1799G00060 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 2.1e-30
Identity = 73/109 (66.97%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 33  LKVIFLVIGARTLRTSTHTPGIPPDTISQGIGREASWLEGELMFDPKLSKRWPMLPRSSE 92
           L +   +  ARTLRTSTHT G+ P   +QGIGREAS LEGEL FDPK  KRWPML  S E
Sbjct: 25  LVISLSIFEARTLRTSTHTSGMLPHMFTQGIGREASSLEGELWFDPKRFKRWPMLATSGE 84

Query: 93  RSSGVRNHWKSTCSKGNGLSSRTFDVRPQKTRVGMPQTQFSRPRVKSDP 142
           R SGVRNHWK TCS  N LSSRT  V P KTR  M +TQFSRPR KSDP
Sbjct: 85  RLSGVRNHWKCTCSGANRLSSRTSGVCPMKTRPRMSRTQFSRPRAKSDP 133

[Close]

BLAST of IVF0002842 vs. ExPASy TrEMBL
Match: A0A5A7VGB1 (Mitochondrial intermembrane space import and assembly protein 40 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G001130 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.0e-27
Identity = 65/86 (75.58%), Postives = 69/86 (80.23%), Query Frame = 0


Query: 52  PGIPPDTISQGIGREASWLEGELMFDPKLSKRWPMLPRSSERSSGVRNHWKSTCSKGNGL 111
           PG+ PDT S GIGREAS LEGEL  DPK SKRWP LP S ERSSGVRNHWK TCS+GNGL
Sbjct: 177 PGMLPDTFSGGIGREASSLEGELWCDPKRSKRWPKLPTSGERSSGVRNHWKCTCSEGNGL 236

Query: 112 SSRTFDVRPQKTRVGMPQTQFSRPRV 138
           SSRT   RP+KT  GMP+TQFSRP V
Sbjct: 237 SSRTSGARPKKTPAGMPRTQFSRPGV 262

[Close]

BLAST of IVF0002842 vs. ExPASy TrEMBL
Match: A0A5A7SLK2 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold29721G00010 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 2.2e-27
Identity = 64/84 (76.19%), Postives = 68/84 (80.95%), Query Frame = 0


Query: 56  PDTISQGIGREASWLEGELMFDPKLSKRWPMLPRSSERSSGVRNHWKSTCSKGNGLSSRT 115
           PD  S GIGREA+ LEGEL  DPK SKRWPMLP S ERSSG RNHWK TCS+GNGLSSRT
Sbjct: 3   PDMFSGGIGREANSLEGELWCDPKRSKRWPMLPTSGERSSGFRNHWKCTCSEGNGLSSRT 62

Query: 116 FDVRPQKTRVGMPQTQFSRPRVKS 140
              RP+KTR GMP+TQFSRP VKS
Sbjct: 63  SGARPKKTRAGMPRTQFSRPGVKS 86

[Close]

BLAST of IVF0002842 vs. ExPASy TrEMBL
Match: A0A5D3DIF8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G00100 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 6.5e-27
Identity = 69/114 (60.53%), Postives = 77/114 (67.54%), Query Frame = 0


Query: 33  LKVIFLVIGARTLRTSTHTPGIPPDTISQGIGREASWLEGELMFDPKLSKRWPMLPRSSE 92
           L +  L+ GA T RTSTHT  + PD  SQGIGREAS LEGEL  DPK  KRWPML  S E
Sbjct: 440 LVISLLIFGAHTPRTSTHTLDMLPDMFSQGIGREASSLEGELRCDPKWYKRWPMLQTSGE 499

Query: 93  RSSGVRNHWKSTCSKGNGLSSRTFDVRPQKTRVGMPQTQFSRPRVKSDPRRFLP 147
            SSGVRN+WK TCS+ N L SRT +V P+KT   MPQTQF RPR  +     LP
Sbjct: 500 LSSGVRNNWKRTCSERNRLGSRTSNVCPKKTLARMPQTQFPRPRTLTHTPGMLP 553

[Close]

BLAST of IVF0002842 vs. ExPASy TrEMBL
Match: A0A5D3DFP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00220 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 8.4e-27
Identity = 69/118 (58.47%), Postives = 76/118 (64.41%), Query Frame = 0


Query: 28  SERECLKVIFLVIG----------------------ARTLRTSTHTPGIPPDTISQGIGR 87
           SEREC ++ FLV+G                        T RTSTHT G+ PDT S GIGR
Sbjct: 349 SERECPRLSFLVLGKLWSPDGFFPLLRIGHKSVDLRGSTPRTSTHTSGMLPDTFSGGIGR 408

Query: 88  EASWLEGELMFDPKLSKRWPMLPRSSERSSGVRNHWKSTCSKGNGLSSRTFDVRPQKT 124
           EAS LEGEL+ DPK SKRWPMLP   ERSSG RNHWK TCS+GNGLSSRT   RP+KT
Sbjct: 409 EASSLEGELLCDPKPSKRWPMLPTGGERSSGFRNHWKCTCSEGNGLSSRTSGARPEKT 466

[Close]

BLAST of IVF0002842 vs. NCBI nr
Match: KAA0061317.1 (hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa] >TYK14265.1 hypothetical protein E5676_scaffold1799G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 143 bits (360), Expect = 6.05e-39
Identity = 73/109 (66.97%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 33  LKVIFLVIGARTLRTSTHTPGIPPDTISQGIGREASWLEGELMFDPKLSKRWPMLPRSSE 92
           L +   +  ARTLRTSTHT G+ P   +QGIGREAS LEGEL FDPK  KRWPML  S E
Sbjct: 25  LVISLSIFEARTLRTSTHTSGMLPHMFTQGIGREASSLEGELWFDPKRFKRWPMLATSGE 84

Query: 93  RSSGVRNHWKSTCSKGNGLSSRTFDVRPQKTRVGMPQTQFSRPRVKSDP 141
           R SGVRNHWK TCS  N LSSRT  V P KTR  M +TQFSRPR KSDP
Sbjct: 85  RLSGVRNHWKCTCSGANRLSSRTSGVCPMKTRPRMSRTQFSRPRAKSDP 133

[Close]

BLAST of IVF0002842 vs. NCBI nr
Match: KAA0026022.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 133 bits (334), Expect = 3.09e-35
Identity = 64/84 (76.19%), Postives = 68/84 (80.95%), Query Frame = 0


Query: 56  PDTISQGIGREASWLEGELMFDPKLSKRWPMLPRSSERSSGVRNHWKSTCSKGNGLSSRT 115
           PD  S GIGREA+ LEGEL  DPK SKRWPMLP S ERSSG RNHWK TCS+GNGLSSRT
Sbjct: 3   PDMFSGGIGREANSLEGELWCDPKRSKRWPMLPTSGERSSGFRNHWKCTCSEGNGLSSRT 62

Query: 116 FDVRPQKTRVGMPQTQFSRPRVKS 139
              RP+KTR GMP+TQFSRP VKS
Sbjct: 63  SGARPKKTRAGMPRTQFSRPGVKS 86

[Close]

BLAST of IVF0002842 vs. NCBI nr
Match: KAA0066117.1 (mitochondrial intermembrane space import and assembly protein 40 [Cucumis melo var. makuwa])

HSP 1 Score: 134 bits (337), Expect = 7.79e-35
Identity = 65/86 (75.58%), Postives = 69/86 (80.23%), Query Frame = 0


Query: 52  PGIPPDTISQGIGREASWLEGELMFDPKLSKRWPMLPRSSERSSGVRNHWKSTCSKGNGL 111
           PG+ PDT S GIGREAS LEGEL  DPK SKRWP LP S ERSSGVRNHWK TCS+GNGL
Sbjct: 177 PGMLPDTFSGGIGREASSLEGELWCDPKRSKRWPKLPTSGERSSGVRNHWKCTCSEGNGL 236

Query: 112 SSRTFDVRPQKTRVGMPQTQFSRPRV 137
           SSRT   RP+KT  GMP+TQFSRP V
Sbjct: 237 SSRTSGARPKKTPAGMPRTQFSRPGV 262

[Close]

BLAST of IVF0002842 vs. NCBI nr
Match: KAA0035524.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK31010.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 128 bits (321), Expect = 5.06e-32
Identity = 64/99 (64.65%), Postives = 74/99 (74.75%), Query Frame = 0


Query: 44  TLRTSTHTPGIPPDTISQGIGREASWLEGELMFDPKLSKRWPMLPRSSERSSGVRNHWKS 103
           TL+TST TP + PDT SQGIG++AS LEGE   DPK SK WPMLP   +RSSGV+NHWK 
Sbjct: 79  TLKTSTITPCMLPDTFSQGIGQKASSLEGEPRCDPKQSKSWPMLPTYRKRSSGVKNHWKC 138

Query: 104 TCSKGNGLSSRTFDVRPQKTRVGMPQTQFSRPRVKSDPR 142
           TC + N LSSRT  VRP+KTR  MP+TQFSRP V+   R
Sbjct: 139 TCREENRLSSRTSSVRPKKTRARMPRTQFSRPVVRKPTR 177

[Close]

BLAST of IVF0002842 vs. NCBI nr
Match: TYK23424.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 132 bits (331), Expect = 5.56e-32
Identity = 69/114 (60.53%), Postives = 77/114 (67.54%), Query Frame = 0


Query: 33  LKVIFLVIGARTLRTSTHTPGIPPDTISQGIGREASWLEGELMFDPKLSKRWPMLPRSSE 92
           L +  L+ GA T RTSTHT  + PD  SQGIGREAS LEGEL  DPK  KRWPML  S E
Sbjct: 440 LVISLLIFGAHTPRTSTHTLDMLPDMFSQGIGREASSLEGELRCDPKWYKRWPMLQTSGE 499

Query: 93  RSSGVRNHWKSTCSKGNGLSSRTFDVRPQKTRVGMPQTQFSRPRVKSDPRRFLP 146
            SSGVRN+WK TCS+ N L SRT +V P+KT   MPQTQF RPR  +     LP
Sbjct: 500 LSSGVRNNWKRTCSERNRLGSRTSNVCPKKTLARMPQTQFPRPRTLTHTPGMLP 553

The following BLAST results are available for this feature:

BLAST of IVF0002842 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0002842 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V368	2.1e-30	66.97	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VGB1	1.0e-27	75.58	Mitochondrial intermembrane space import and assembly protein 40 OS=Cucumis melo...	[more]
A0A5A7SLK2	2.2e-27	76.19	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak...	[more]
A0A5D3DIF8	6.5e-27	60.53	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G0010...	[more]
A0A5D3DFP2	8.4e-27	58.47	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0002842 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061317.1	6.05e-39	66.97	hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa] >TYK142...	[more]
KAA0026022.1	3.09e-35	76.19	Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw...	[more]
KAA0066117.1	7.79e-35	75.58	mitochondrial intermembrane space import and assembly protein 40 [Cucumis melo v...	[more]
KAA0035524.1	5.06e-32	64.65	NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK31010.1 NBS-LRR t...	[more]
TYK23424.1	5.56e-32	60.53	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0002842 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0002842.1	IVF0002842.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0140640	catalytic activity, acting on a nucleic acid
molecular_function	GO:0046872	metal ion binding