IVF0002781 (gene) Melon (IVF77) v1

Overview
NameIVF0002781
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionarabinogalactan peptide 23-like
Locationchr01: 30446919 .. 30447101 (+)
RNA-Seq ExpressionIVF0002781
SyntenyIVF0002781
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATGAAGAAGATCGCTTGCGCTGCTCTTTTCGCCGCTGCTGCCGTCAGCGCCGCGGTGGCTGCAGACGAGTCTATCTCTCCCGCCGCCGCCCCAGGGCCGAGCAGCGCCGCCTCCGCAGCTCTCCCCGTTCTCGGTGCCTCAGTTGTTTCCTTTGTTGCTGCTTACTTCTTGAACTGA

mRNA sequence

ATGGAAATGAAGAAGATCGCTTGCGCTGCTCTTTTCGCCGCTGCTGCCGTCAGCGCCGCGGTGGCTGCAGACGAGTCTATCTCTCCCGCCGCCGCCCCAGGGCCGAGCAGCGCCGCCTCCGCAGCTCTCCCCGTTCTCGGTGCCTCAGTTGTTTCCTTTGTTGCTGCTTACTTCTTGAACTGA

Coding sequence (CDS)

ATGGAAATGAAGAAGATCGCTTGCGCTGCTCTTTTCGCCGCTGCTGCCGTCAGCGCCGCGGTGGCTGCAGACGAGTCTATCTCTCCCGCCGCCGCCCCAGGGCCGAGCAGCGCCGCCTCCGCAGCTCTCCCCGTTCTCGGTGCCTCAGTTGTTTCCTTTGTTGCTGCTTACTTCTTGAACTGA

Protein sequence

MEMKKIACAALFAAAAVSAAVAADESISPAAAPGPSSAASAALPVLGASVVSFVAAYFLN
Homology
BLAST of IVF0002781 vs. ExPASy Swiss-Prot
Match: Q8S2W4 (Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2)

HSP 1 Score: 48.5 bits (114), Expect = 3.0e-05
Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 0

Query: 1  MEMKKIACAALFAAAAVSAAVAADESISPAAAPGPSSAASAALPVL----GASVVSFVAA 58
          MEMKKIAC  LFAAA+++A +AA+E  +P  APGP+SAASAALP L    GAS+VS  + 
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAP--APGPASAASAALPALGSLVGASLVSLFSY 59

BLAST of IVF0002781 vs. ExPASy TrEMBL
Match: A0A1S3CDX5 (arabinogalactan peptide 23-like OS=Cucumis melo OX=3656 GN=LOC103499912 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.7e-17
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0

Query: 1  MEMKKIACAALFAAAAVSAAVAADESISPAAAPGPSSAASAALPVLGASVVSFVAAYFLN 60
          MEMKKIACAALFAAAAVSAAVAADESISPAAAPGPSSAASAALPVLGASVVSFVAAYFLN
Sbjct: 1  MEMKKIACAALFAAAAVSAAVAADESISPAAAPGPSSAASAALPVLGASVVSFVAAYFLN 60

BLAST of IVF0002781 vs. ExPASy TrEMBL
Match: A0A0A0K6L5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G428800 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.7e-15
Identity = 58/64 (90.62%), Postives = 60/64 (93.75%), Query Frame = 0

Query: 1  MEMKKIACAALFAAAAVSAAVAADESI----SPAAAPGPSSAASAALPVLGASVVSFVAA 60
          MEMKKIACAALFAAAA+SAAVAADES+    SPAAAPGPSSAASAALPVLGASVVSFVAA
Sbjct: 1  MEMKKIACAALFAAAAISAAVAADESLSPGASPAAAPGPSSAASAALPVLGASVVSFVAA 60

BLAST of IVF0002781 vs. ExPASy TrEMBL
Match: A0A6J1KX42 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111497929 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-10
Identity = 50/62 (80.65%), Postives = 54/62 (87.10%), Query Frame = 0

Query: 1  MEMKKIACAALFAAAAVSAAVAADESISPAAAPGPSSAASAALPVL----GASVVSFVAA 59
          MEMKKIACAALFAAA V+A VA+DES+SPAAAPGPSSAASAALP L    GAS+VSFVA 
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60

BLAST of IVF0002781 vs. ExPASy TrEMBL
Match: A0A6J1H8I1 (arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111461032 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.5e-10
Identity = 49/62 (79.03%), Postives = 54/62 (87.10%), Query Frame = 0

Query: 1  MEMKKIACAALFAAAAVSAAVAADESISPAAAPGPSSAASAALPVL----GASVVSFVAA 59
          MEMKKIACAALFAAA ++A VA+DES+SPAAAPGPSSAASAALP L    GAS+VSFVA 
Sbjct: 1  MEMKKIACAALFAAATLTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAF 60

BLAST of IVF0002781 vs. ExPASy TrEMBL
Match: A0A6J1F3F5 (arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111439670 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.6e-09
Identity = 48/62 (77.42%), Postives = 52/62 (83.87%), Query Frame = 0

Query: 1  MEMKKIACAALFAAAAVSAAVAADESISPAAAPGPSSAASAALPVL----GASVVSFVAA 59
          MEMKKIACAALFAAA V+A VA+DES+SPAAAPGPSSAASA LP L    GAS+VS VA 
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASATLPALGSLVGASLVSLVAY 60

BLAST of IVF0002781 vs. NCBI nr
Match: XP_008461276.1 (PREDICTED: arabinogalactan peptide 23-like [Cucumis melo])

HSP 1 Score: 95.5 bits (236), Expect = 2.73e-24
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0

Query: 1  MEMKKIACAALFAAAAVSAAVAADESISPAAAPGPSSAASAALPVLGASVVSFVAAYFLN 60
          MEMKKIACAALFAAAAVSAAVAADESISPAAAPGPSSAASAALPVLGASVVSFVAAYFLN
Sbjct: 1  MEMKKIACAALFAAAAVSAAVAADESISPAAAPGPSSAASAALPVLGASVVSFVAAYFLN 60

BLAST of IVF0002781 vs. NCBI nr
Match: KGN45143.1 (hypothetical protein Csa_016530 [Cucumis sativus])

HSP 1 Score: 88.6 bits (218), Expect = 1.69e-21
Identity = 58/64 (90.62%), Postives = 60/64 (93.75%), Query Frame = 0

Query: 1  MEMKKIACAALFAAAAVSAAVAADESISP----AAAPGPSSAASAALPVLGASVVSFVAA 60
          MEMKKIACAALFAAAA+SAAVAADES+SP    AAAPGPSSAASAALPVLGASVVSFVAA
Sbjct: 1  MEMKKIACAALFAAAAISAAVAADESLSPGASPAAAPGPSSAASAALPVLGASVVSFVAA 60

BLAST of IVF0002781 vs. NCBI nr
Match: XP_038899473.1 (arabinogalactan protein 23-like [Benincasa hispida])

HSP 1 Score: 78.2 bits (191), Expect = 2.17e-17
Identity = 54/64 (84.38%), Postives = 58/64 (90.62%), Query Frame = 0

Query: 1  MEMKKIACAALFAAAAVSAAVAADESISPAAAPGPSSAASAALPVLG----ASVVSFVAA 60
          MEMKKIACAALFAAAAVS+AVAADES+SPAAAPGPSSAASAALP LG    AS+V+FVA 
Sbjct: 1  MEMKKIACAALFAAAAVSSAVAADESLSPAAAPGPSSAASAALPALGSLVGASLVTFVA- 60

BLAST of IVF0002781 vs. NCBI nr
Match: KAG7025661.1 (Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 74.7 bits (182), Expect = 5.12e-16
Identity = 50/62 (80.65%), Postives = 54/62 (87.10%), Query Frame = 0

Query: 1  MEMKKIACAALFAAAAVSAAVAADESISPAAAPGPSSAASAALPVLG----ASVVSFVAA 58
          MEMKKIACAALFAAA V+A VA+DES+SPAAAPGPSSAASAALP LG    AS+VSFVA 
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAF 60

BLAST of IVF0002781 vs. NCBI nr
Match: XP_023004714.1 (arabinogalactan peptide 23-like [Cucurbita maxima])

HSP 1 Score: 74.7 bits (182), Expect = 5.12e-16
Identity = 50/62 (80.65%), Postives = 54/62 (87.10%), Query Frame = 0

Query: 1  MEMKKIACAALFAAAAVSAAVAADESISPAAAPGPSSAASAALPVLG----ASVVSFVAA 58
          MEMKKIACAALFAAA V+A VA+DES+SPAAAPGPSSAASAALP LG    AS+VSFVA 
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60

BLAST of IVF0002781 vs. TAIR 10
Match: AT3G57690.1 (arabinogalactan protein 23 )

HSP 1 Score: 48.5 bits (114), Expect = 2.2e-06
Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 0

Query: 1  MEMKKIACAALFAAAAVSAAVAADESISPAAAPGPSSAASAALPVL----GASVVSFVAA 58
          MEMKKIAC  LFAAA+++A +AA+E  +P  APGP+SAASAALP L    GAS+VS  + 
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAP--APGPASAASAALPALGSLVGASLVSLFSY 59

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q8S2W43.0e-0560.66Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2[more]
Match NameE-valueIdentityDescription
A0A1S3CDX54.7e-17100.00arabinogalactan peptide 23-like OS=Cucumis melo OX=3656 GN=LOC103499912 PE=4 SV=... [more]
A0A0A0K6L55.7e-1590.63Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G428800 PE=4 SV=1[more]
A0A6J1KX421.1e-1080.65arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111497929 PE=4... [more]
A0A6J1H8I12.5e-1079.03arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111461032 PE... [more]
A0A6J1F3F51.6e-0977.42arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111439670 PE... [more]
Match NameE-valueIdentityDescription
XP_008461276.12.73e-24100.00PREDICTED: arabinogalactan peptide 23-like [Cucumis melo][more]
KGN45143.11.69e-2190.63hypothetical protein Csa_016530 [Cucumis sativus][more]
XP_038899473.12.17e-1784.38arabinogalactan protein 23-like [Benincasa hispida][more]
KAG7025661.15.12e-1680.65Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023004714.15.12e-1680.65arabinogalactan peptide 23-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
AT3G57690.12.2e-0660.66arabinogalactan protein 23 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR044702Arabinogalactan protein 23/40PANTHERPTHR34672POLLEN-SPECIFIC ARABINOGALACTA PROTEIN BAN102coord: 1..58
NoneNo IPR availablePANTHERPTHR34672:SF2ARABINOGALACTAN PROTEIN 23coord: 1..58

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0002781.2IVF0002781.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane