IVF0002768 (gene) Melon (IVF77) v1

Overview
NameIVF0002768
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag-pro-like protein
Locationchr08: 13283915 .. 13284157 (-)
RNA-Seq ExpressionIVF0002768
SyntenyIVF0002768
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGAGCAAAGCAATGATCAGGTTCAAGCAGTTCGTCAAGACGTTGAAGGATTGAAAGATCAATTGACAAAGATCTTGGAATTGCTCTCTACTGGAAGAGGAAAGAGTGTTGTATGGATTTCATCACAAGTGGAAGTAGATCTAAATCATGTACTAGAGGACATGACTGCGTACCCTCAAGGTTTTACTCCTCAAAGGTCGTCTAGTCCTCGCATGGTTGATAGGACATATCCTACATAA

mRNA sequence

ATGGATGAGCAAAGCAATGATCAGGTTCAAGCAGTTCGTCAAGACGTTGAAGGATTGAAAGATCAATTGACAAAGATCTTGGAATTGCTCTCTACTGGAAGAGGAAAGAGTGTTGTATGGATTTCATCACAAGTGGAAGTAGATCTAAATCATGTACTAGAGGACATGACTGCGTACCCTCAAGGTTTTACTCCTCAAAGGTCGTCTAGTCCTCGCATGGTTGATAGGACATATCCTACATAA

Coding sequence (CDS)

ATGGATGAGCAAAGCAATGATCAGGTTCAAGCAGTTCGTCAAGACGTTGAAGGATTGAAAGATCAATTGACAAAGATCTTGGAATTGCTCTCTACTGGAAGAGGAAAGAGTGTTGTATGGATTTCATCACAAGTGGAAGTAGATCTAAATCATGTACTAGAGGACATGACTGCGTACCCTCAAGGTTTTACTCCTCAAAGGTCGTCTAGTCCTCGCATGGTTGATAGGACATATCCTACATAA

Protein sequence

MDEQSNDQVQAVRQDVEGLKDQLTKILELLSTGRGKSVVWISSQVEVDLNHVLEDMTAYPQGFTPQRSSSPRMVDRTYPT
Homology
[Close]
BLAST of IVF0002768 vs. ExPASy TrEMBL
Match: A0A1S4E553 (uncharacterized protein LOC107992146 OS=Cucumis melo OX=3656 GN=LOC107992146 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.0e-32
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 0 

Query: 1  MDEQSNDQVQAVRQDVEGLKDQLTKILELLSTGRGKSVVWISSQVEVDLNHVLEDMTAYP 60
          MDEQSNDQVQAVRQDVEGLKDQLTKILELLSTGRGKSVVWISSQVEVDLNHVLEDMTAYP
Sbjct: 1  MDEQSNDQVQAVRQDVEGLKDQLTKILELLSTGRGKSVVWISSQVEVDLNHVLEDMTAYP 60

Query: 61 QGFTPQRSSSPRMVD 76
          QGFTPQRSSSPRM D
Sbjct: 61 QGFTPQRSSSPRMAD 75

[Close]
BLAST of IVF0002768 vs. ExPASy TrEMBL
Match: A0A5A7SR42 (Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G001180 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 8.4e-30
Identity = 71/80 (88.75%), Postives = 74/80 (92.50%), Query Frame = 0 

Query: 1  MDEQSNDQVQAVRQDVEGLKDQLTKILELLSTGRGKSVVWISSQVEVDLNHVLEDMTAYP 60
          MDEQSNDQVQAVRQDVEGLKDQL KILELL+TGRGKSV  ISSQVEVDLN VLEDMT YP
Sbjct: 1  MDEQSNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGISSQVEVDLNQVLEDMTTYP 60

Query: 61 QGFTPQRSSSPRMVDRTYPT 81
           GFTPQ+SSSPR+VDRTYPT
Sbjct: 61 PGFTPQQSSSPRIVDRTYPT 80

[Close]
BLAST of IVF0002768 vs. ExPASy TrEMBL
Match: A0A5A7VAU5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00060 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 9.3e-29
Identity = 70/80 (87.50%), Postives = 72/80 (90.00%), Query Frame = 0 

Query: 1  MDEQSNDQVQAVRQDVEGLKDQLTKILELLSTGRGKSVVWISSQVEVDLNHVLEDMTAYP 60
          MDEQ+NDQVQAVRQDVEGLKDQL KILELL+TGRGKSVV  SSQVEVDLN VLEDM  YP
Sbjct: 1  MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVVGTSSQVEVDLNQVLEDMPTYP 60

Query: 61 QGFTPQRSSSPRMVDRTYPT 81
           GFTPQRSSSPRM DRTYPT
Sbjct: 61 PGFTPQRSSSPRMGDRTYPT 80

[Close]
BLAST of IVF0002768 vs. ExPASy TrEMBL
Match: A0A5A7V681 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold455G00760 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 9.3e-29
Identity = 70/80 (87.50%), Postives = 72/80 (90.00%), Query Frame = 0 

Query: 1  MDEQSNDQVQAVRQDVEGLKDQLTKILELLSTGRGKSVVWISSQVEVDLNHVLEDMTAYP 60
          MDEQ+NDQVQAVRQDVEGLKDQL KILELL+TGRGKSV   SSQVEVDLN VLEDM AYP
Sbjct: 1  MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGTSSQVEVDLNQVLEDMPAYP 60

Query: 61 QGFTPQRSSSPRMVDRTYPT 81
           GFTPQRSSSPRM DRTYPT
Sbjct: 61 PGFTPQRSSSPRMGDRTYPT 80

[Close]
BLAST of IVF0002768 vs. ExPASy TrEMBL
Match: A0A5D3CGN1 (Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G00520 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.1e-28
Identity = 68/80 (85.00%), Postives = 73/80 (91.25%), Query Frame = 0 

Query: 1  MDEQSNDQVQAVRQDVEGLKDQLTKILELLSTGRGKSVVWISSQVEVDLNHVLEDMTAYP 60
          MDE++NDQVQAV QDVEGLKDQLTKILELL+TGRGKS+V  SSQVE+DL  VLEDM AYP
Sbjct: 1  MDEKTNDQVQAVHQDVEGLKDQLTKILELLTTGRGKSIVRTSSQVEMDLTQVLEDMPAYP 60

Query: 61 QGFTPQRSSSPRMVDRTYPT 81
           GFTPQRSSSPRMVDRTYPT
Sbjct: 61 SGFTPQRSSSPRMVDRTYPT 80

[Close]
BLAST of IVF0002768 vs. NCBI nr
Match: XP_016903363.1 (PREDICTED: uncharacterized protein LOC107992146 [Cucumis melo])

HSP 1 Score: 145 bits (366), Expect = 4.04e-42
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 0 

Query: 1  MDEQSNDQVQAVRQDVEGLKDQLTKILELLSTGRGKSVVWISSQVEVDLNHVLEDMTAYP 60
          MDEQSNDQVQAVRQDVEGLKDQLTKILELLSTGRGKSVVWISSQVEVDLNHVLEDMTAYP
Sbjct: 1  MDEQSNDQVQAVRQDVEGLKDQLTKILELLSTGRGKSVVWISSQVEVDLNHVLEDMTAYP 60

Query: 61 QGFTPQRSSSPRMVD 75
          QGFTPQRSSSPRM D
Sbjct: 61 QGFTPQRSSSPRMAD 75

[Close]
BLAST of IVF0002768 vs. NCBI nr
Match: KAA0032021.1 (Gag-pro-like protein [Cucumis melo var. makuwa] >TYK16842.1 Gag-pro-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 138 bits (347), Expect = 1.49e-38
Identity = 71/80 (88.75%), Postives = 74/80 (92.50%), Query Frame = 0 

Query: 1  MDEQSNDQVQAVRQDVEGLKDQLTKILELLSTGRGKSVVWISSQVEVDLNHVLEDMTAYP 60
          MDEQSNDQVQAVRQDVEGLKDQL KILELL+TGRGKSV  ISSQVEVDLN VLEDMT YP
Sbjct: 1  MDEQSNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGISSQVEVDLNQVLEDMTTYP 60

Query: 61 QGFTPQRSSSPRMVDRTYPT 80
           GFTPQ+SSSPR+VDRTYPT
Sbjct: 61 PGFTPQQSSSPRIVDRTYPT 80

[Close]
BLAST of IVF0002768 vs. NCBI nr
Match: TYK09459.1 (Gag-pro-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 133 bits (335), Expect = 4.95e-37
Identity = 68/80 (85.00%), Postives = 73/80 (91.25%), Query Frame = 0 

Query: 1  MDEQSNDQVQAVRQDVEGLKDQLTKILELLSTGRGKSVVWISSQVEVDLNHVLEDMTAYP 60
          MDE++NDQVQAV QDVEGLKDQLTKILELL+TGRGKS+V  SSQVE+DL  VLEDM AYP
Sbjct: 1  MDEKTNDQVQAVHQDVEGLKDQLTKILELLTTGRGKSIVRTSSQVEMDLTQVLEDMPAYP 60

Query: 61 QGFTPQRSSSPRMVDRTYPT 80
           GFTPQRSSSPRMVDRTYPT
Sbjct: 61 SGFTPQRSSSPRMVDRTYPT 80

[Close]
BLAST of IVF0002768 vs. NCBI nr
Match: TYK15864.1 (Gag-pro-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 132 bits (332), Expect = 1.37e-36
Identity = 69/80 (86.25%), Postives = 71/80 (88.75%), Query Frame = 0 

Query: 1  MDEQSNDQVQAVRQDVEGLKDQLTKILELLSTGRGKSVVWISSQVEVDLNHVLEDMTAYP 60
          MDEQ+NDQVQAV QDVEGLKDQL KILELL+TGRGKSV  ISSQVEVDLN VLEDM  YP
Sbjct: 1  MDEQTNDQVQAVCQDVEGLKDQLAKILELLTTGRGKSVAGISSQVEVDLNQVLEDMPVYP 60

Query: 61 QGFTPQRSSSPRMVDRTYPT 80
           GF PQRSSSPRMVDRTYPT
Sbjct: 61 PGFIPQRSSSPRMVDRTYPT 80

[Close]
BLAST of IVF0002768 vs. NCBI nr
Match: KAA0056366.1 (uncharacterized protein E6C27_scaffold186G001020 [Cucumis melo var. makuwa] >TYK29149.1 uncharacterized protein E5676_scaffold120G003010 [Cucumis melo var. makuwa])

HSP 1 Score: 129 bits (323), Expect = 1.63e-36
Identity = 66/80 (82.50%), Postives = 70/80 (87.50%), Query Frame = 0 

Query: 1  MDEQSNDQVQAVRQDVEGLKDQLTKILELLSTGRGKSVVWISSQVEVDLNHVLEDMTAYP 60
          MDEQ+NDQ+QAVRQDVEGLKDQL KILE L+TGRGKSV   SSQVEVDLN VLEDM AYP
Sbjct: 1  MDEQTNDQIQAVRQDVEGLKDQLAKILESLTTGRGKSVTGTSSQVEVDLNEVLEDMPAYP 60

Query: 61 QGFTPQRSSSPRMVDRTYPT 80
           GFTPQRSS P M+DRTYPT
Sbjct: 61 PGFTPQRSSGPCMMDRTYPT 80

The following BLAST results are available for this feature:
BLAST of IVF0002768 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0002768 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S4E5534.0e-3298.67uncharacterized protein LOC107992146 OS=Cucumis melo OX=3656 GN=LOC107992146 PE=... [more]
A0A5A7SR428.4e-3088.75Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G... [more]
A0A5A7VAU59.3e-2987.50Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7V6819.3e-2987.50Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3CGN12.1e-2885.00Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499... [more]
BLAST of IVF0002768 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016903363.14.04e-4298.67PREDICTED: uncharacterized protein LOC107992146 [Cucumis melo][more]
KAA0032021.11.49e-3888.75Gag-pro-like protein [Cucumis melo var. makuwa] >TYK16842.1 Gag-pro-like protein... [more]
TYK09459.14.95e-3785.00Gag-pro-like protein [Cucumis melo var. makuwa][more]
TYK15864.11.37e-3686.25Gag-pro-like protein [Cucumis melo var. makuwa][more]
KAA0056366.11.63e-3682.50uncharacterized protein E6C27_scaffold186G001020 [Cucumis melo var. makuwa] >TYK... [more]
BLAST of IVF0002768 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0002768.2IVF0002768.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
molecular_function GO:0003964 RNA-directed DNA polymerase activity