IVF0002621 (gene) Melon (IVF77) v1

Overview


Name	IVF0002621
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr01: 15219002 .. 15219429 (+)
RNA-Seq Expression	IVF0002621
Synteny	IVF0002621

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGCAGGGGCGCGGCTTGTGGGTGTACGCGGCGTGACTCACATGTGGACGCGGCTTGCGGGTGTACGCGGCGTAGCTTATACGCGGGTGCGGTGTGGAGCGGGCGCGAGGCGGCTGGACGTTCGGGTCGGGTAGCGATGCAGAGCGGATCGGTCTTCACGCGGTTGTTTGGGTCGGCTACGGTCACGGGTGGCATTCGGCTCGCTCGGGACGATCGGCTGGACAGGCGACGACGACAGCGACGACCGGCGAACTTCACGGTGGTGGCATTTGGCTGGGGCACAACGGACGACAGACGATGGAAGGGATCGACTGGAGAGATGCGGGTCGGCTTCCGATCTGCGAGAGTGGCGGCTTGGATGGGTGTCGCTCGGCTCGGCTACCAGCTCGGCTTGATCTGCGACGGACGCCCGATGACGACAACTGA

mRNA sequence

ATGCGCAGGGGCGCGGCTTGTGGGTGCGGCTGGACGTTCGGGTCGGGTAGCGATGCAGAGCGGATCGGTCTTCACGCGGTTGTTTGGGTCGGCTACGGTCACGGGTGGCATTCGGCTCGCTCGGGACGATCGGCTGGACAGGCGACGACGACAGCGACGACCGGCGAACTTCACGGTGGTGGCATTTGGCTGGGGCACAACGGACGACAGACGATGGAAGGGATCGACTGGAGAGATGCGGGTCGGCTTCCGATCTGCGAGAGTGGCGGCTTGGATGGGTGTCGCTCGGCTCGGCTACCAGCTCGGCTTGATCTGCGACGGACGCCCGATGACGACAACTGA

Coding sequence (CDS)

ATGCGCAGGGGCGCGGCTTGTGGGTGCGGCTGGACGTTCGGGTCGGGTAGCGATGCAGAGCGGATCGGTCTTCACGCGGTTGTTTGGGTCGGCTACGGTCACGGGTGGCATTCGGCTCGCTCGGGACGATCGGCTGGACAGGCGACGACGACAGCGACGACCGGCGAACTTCACGGTGGTGGCATTTGGCTGGGGCACAACGGACGACAGACGATGGAAGGGATCGACTGGAGAGATGCGGGTCGGCTTCCGATCTGCGAGAGTGGCGGCTTGGATGGGTGTCGCTCGGCTCGGCTACCAGCTCGGCTTGATCTGCGACGGACGCCCGATGACGACAACTGA

Protein sequence

MRRGAACGCGWTFGSGSDAERIGLHAVVWVGYGHGWHSARSGRSAGQATTTATTGELHGGGIWLGHNGRQTMEGIDWRDAGRLPICESGGLDGCRSARLPARLDLRRTPDDDN

Homology

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BLAST of IVF0002621 vs. NCBI nr
Match: KAA0065619.1 (MuDRA-like transposase [Cucumis melo var. makuwa])

HSP 1 Score: 48.9 bits (115), Expect = 7.88e-04
Identity = 41/116 (35.34%), Postives = 51/116 (43.97%), Query Frame = 0


Query: 8   GCGWTFGSGSDAERIGLHAV----VWVG-YGH----GWHSARSGRSA-------GQATTT 67
           G G  +G    A R G  A     V+ G +G     GW S RSGR +       G AT  
Sbjct: 199 GAGAAYGGRGRAGRSGRVAARSGSVFTGLFGSAAVDGWRSTRSGRVSWGDATMLGSATGA 258

Query: 68  ATTGELHGGGIWLGHNGRQTMEGIDWRDAGRLPICESGGLDGCRSARLPARLDLRR 107
           A TGELHGGG WLG +GR+           + P    G     R  R+ AR+ + R
Sbjct: 259 AATGELHGGGAWLGQDGRR-----------KKPTGRCGSTSDLR--RMDARMGVDR 301

The following BLAST results are available for this feature:

BLAST of IVF0002621 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0002621 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0002621 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065619.1	7.88e-04	35.34	MuDRA-like transposase [Cucumis melo var. makuwa]	[more]

BLAST of IVF0002621 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0002621.1	IVF0002621.1	mRNA