IVF0002604 (gene) Melon (IVF77) v1

Overview


Name	IVF0002604
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	DNA polymerase I
Location	chr06: 21329666 .. 21331391 (-)
RNA-Seq Expression	IVF0002604
Synteny	IVF0002604

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGATGCCTTTGCTTCTGAAAGAAGGAAGGCTAAAATGCTTAATTTTTCCATTGCATATGGCAAGACTCCTGTTGGCCTTTCCAAAGATTGGAAGGTATTTTCCAAAACCTACTTCCTGTCCCAGTATCGTTAAGTTGCTAATGGCCATGGTTACCTCACCATACAGGTTTCCTTGGAGGAAGCAAAGAAGACAGTTAACTTGTGGTATAATGAAAGAAAAGAAGTTCGTGAGTGGCAAGATCTTCGAATGGCAGAGGCTGCGGAGGAATCATGCGTTCGTACATTGCTTGGACGAGCTCGTAGGTTTCCTTCAATGAAGCATGCTACTCGTTTCCAGAAAGGACATATAGAAAGAGCTGCTATCAATACTCCCGTGCAGGTATGTTCATAAACTTCCTTTCTCAGCTTTTTGTTATCCCACTCTCCAATATTTAATTTGGGCCACGAATGTCTCTGTTACAGGGTAGTGCTGCTGACGTTGCCATGTGTGCCATGTTGGAAATATCTAAAAATTCACGTTTGAGGGAACTTGGATGGAGGCTGCTTTTACAGGTTATTTGTCACCATCTTTAATCTTCCACTTTGGTAGTTGTTACGTTTCCTAATGCTAAAGGCTTGTTTCGGAGATTGTTTTCAAAATAACTTTCTGCTTTTGTTTCCAAAGCTGTTTGAAAGAATTCATAAAAGATTAGGATTTGACATTCAACTCATATTTACAAGCTGAAGCACTTTTAGGGCTATCATTAAGTGTAGCAACAGTTGTAAAATATTGCAAGTATACAAAATCTATCAATGATGGGCTCCTTAGGCTGTTAGTGATACTTCTTGGGGCCTAATTGCTATGTAATATTTATAACTGCTCCTTTTAATAAAAAAAAAACCAACTTCGGAAATAAAAGAGAAGACAACTTTTAAAACCATCGCCAAACGTGTTTCTGCTGAATTTAATTTTGTTATCTGAAATAGATTAAGAATCAGGTCCTAAACAAGGCCATAGGTTCTGATCGAGACAATAAGAGCTATTATAAATATTGTAAATAGTAAAAGACTTAAAAATAAATGAATTTAAGTCATAGTGACCTCCTATCTAAGATTTAATATCTCAAAAGTTTCATTGCTAATTGCATATAGTAAGGTAAAAATAGTTGTTCCATGAGAGTAGCCTAAAATGTGTGCAAGTCGGTGCAAAATAAAAGGCCACTCAAAGATATTTAAAAGAACTGAGCAGAGCTAACCTTTTGGTATGAGAAAAAACTGAAAACTGCCAAGACAAACCAACCAACAAAACAACTAAACCAAGATTAATATATTTTAAGTTTGAATATATATATTTGAATGGATTGGCTGACATATGTTAGTTTAACTGTTTCAATTAGTTGTTTTCCAATTTTAACTTGCATCCCTTCCCGCAACACCCAATTTTTCTGTTTTGCATGAATTAACACTTCTTCTGAAAGTCAGGTTCATGATGAAGTAATCTTGGAAGGACCAACCGAGTCTGCTGAGGTTGCTAAGGCCATTGTTGTCGAGTGCATGTCGAAACCCTTCAATGGAAAGAACATTCTTAATGTCGACCTTGCAGTGGATGCCAAGTGTGCACAAAACTGGTATTCTGCCAAATAGATTTTTAACAAAAGAATTTCTGACTAAACTAACAAACGTCAAATGCTCCATCAGTTCAACTTTTGGATGCCTTGTGAAGGTTGTTTATGCTAAGCTGA

mRNA sequence

ATGCAGGATGCCTTTGCTTCTGAAAGAAGGAAGGCTAAAATGCTTAATTTTTCCATTGCATATGGCAAGACTCCTGTTGGCCTTTCCAAAGATTGGAAGGTTTCCTTGGAGGAAGCAAAGAAGACAGTTAACTTGTGGTATAATGAAAGAAAAGAAGTTCGTGAGTGGCAAGATCTTCGAATGGCAGAGGCTGCGGAGGAATCATGCGTTCGTACATTGCTTGGACGAGCTCGTAGGTTTCCTTCAATGAAGCATGCTACTCGTTTCCAGAAAGGACATATAGAAAGAGCTGCTATCAATACTCCCGTGCAGGGTAGTGCTGCTGACGTTGCCATGTGTGCCATGTTGGAAATATCTAAAAATTCACGTTTGAGGGAACTTGGATGGAGGCTGCTTTTACAGGTTCATGATGAAGTAATCTTGGAAGGACCAACCGAGTCTGCTGAGGTTGCTAAGGCCATTGTTGTCGAGTGCATGTCGAAACCCTTCAATGGAAAGAACATTCTTAATGTCGACCTTGCAGTGGATGCCAAGTGTGCACAAAACTGGTTGTTTATGCTAAGCTGA

Coding sequence (CDS)

ATGCAGGATGCCTTTGCTTCTGAAAGAAGGAAGGCTAAAATGCTTAATTTTTCCATTGCATATGGCAAGACTCCTGTTGGCCTTTCCAAAGATTGGAAGGTTTCCTTGGAGGAAGCAAAGAAGACAGTTAACTTGTGGTATAATGAAAGAAAAGAAGTTCGTGAGTGGCAAGATCTTCGAATGGCAGAGGCTGCGGAGGAATCATGCGTTCGTACATTGCTTGGACGAGCTCGTAGGTTTCCTTCAATGAAGCATGCTACTCGTTTCCAGAAAGGACATATAGAAAGAGCTGCTATCAATACTCCCGTGCAGGGTAGTGCTGCTGACGTTGCCATGTGTGCCATGTTGGAAATATCTAAAAATTCACGTTTGAGGGAACTTGGATGGAGGCTGCTTTTACAGGTTCATGATGAAGTAATCTTGGAAGGACCAACCGAGTCTGCTGAGGTTGCTAAGGCCATTGTTGTCGAGTGCATGTCGAAACCCTTCAATGGAAAGAACATTCTTAATGTCGACCTTGCAGTGGATGCCAAGTGTGCACAAAACTGGTTGTTTATGCTAAGCTGA

Protein sequence

MQDAFASERRKAKMLNFSIAYGKTPVGLSKDWKVSLEEAKKTVNLWYNERKEVREWQDLRMAEAAEESCVRTLLGRARRFPSMKHATRFQKGHIERAAINTPVQGSAADVAMCAMLEISKNSRLRELGWRLLLQVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILNVDLAVDAKCAQNWLFMLS

Homology

[Close]

BLAST of IVF0002604 vs. ExPASy Swiss-Prot
Match: Q84ND9 (DNA polymerase I B, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=POLIB PE=2 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 3.2e-77
Identity = 143/183 (78.14%), Postives = 164/183 (89.62%), Query Frame = 0


Query: 1    MQDAFASERRKAKMLNFSIAYGKTPVGLSKDWKVSLEEAKKTVNLWYNERKEVREWQDLR 60
            ++DAFASERRKAKMLNFSIAYGKT +GLS+DWKVS EEA+ TVNLWYN+R+EVR+WQ+LR
Sbjct: 850  LKDAFASERRKAKMLNFSIAYGKTAIGLSRDWKVSREEAQDTVNLWYNDRQEVRKWQELR 909

Query: 61   MAEAAEESCVRTLLGRARRFPSMKHATRFQKGHIERAAINTPVQGSAADVAMCAMLEISK 120
              EA ++  V TLLGRAR+FP  ++ +R QK HIERAAINTPVQGSAADVAMCAMLEIS 
Sbjct: 910  KKEAIQKGYVLTLLGRARKFP--EYRSRAQKNHIERAAINTPVQGSAADVAMCAMLEISN 969

Query: 121  NSRLRELGWRLLLQVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILNVDLAVDAKCA 180
            N RL+ELGW+LLLQVHDEVILEGP+ESAE AK IVV CMS+PFNGKNIL+VDL+VDAKCA
Sbjct: 970  NQRLKELGWKLLLQVHDEVILEGPSESAENAKDIVVNCMSEPFNGKNILSVDLSVDAKCA 1029

Query: 181  QNW 184
            QNW
Sbjct: 1030 QNW 1030

[Close]

BLAST of IVF0002604 vs. ExPASy Swiss-Prot
Match: F4I6M1 (DNA polymerase I A, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=POLIA PE=2 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 7.9e-76
Identity = 138/183 (75.41%), Postives = 165/183 (90.16%), Query Frame = 0


Query: 1    MQDAFASERRKAKMLNFSIAYGKTPVGLSKDWKVSLEEAKKTVNLWYNERKEVREWQDLR 60
            ++DAF SERRKAKMLNFSIAYGKT VGLS+DWKVS +EA++TV+LWYN+R+EVR+WQ++R
Sbjct: 866  LKDAFGSERRKAKMLNFSIAYGKTAVGLSRDWKVSTKEAQETVDLWYNDRQEVRKWQEMR 925

Query: 61   MAEAAEESCVRTLLGRARRFPSMKHATRFQKGHIERAAINTPVQGSAADVAMCAMLEISK 120
              EA E+  V TLLGR+RRFP+ K  +R Q+ HI+RAAINTPVQGSAADVAMCAMLEIS 
Sbjct: 926  KKEAIEDGYVLTLLGRSRRFPASK--SRAQRNHIQRAAINTPVQGSAADVAMCAMLEISI 985

Query: 121  NSRLRELGWRLLLQVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILNVDLAVDAKCA 180
            N +L++LGWRLLLQ+HDEVILEGP ESAE+AK IVV+CMSKPFNG+NIL+VDL+VDAKCA
Sbjct: 986  NQQLKKLGWRLLLQIHDEVILEGPIESAEIAKDIVVDCMSKPFNGRNILSVDLSVDAKCA 1045

Query: 181  QNW 184
            QNW
Sbjct: 1046 QNW 1046

[Close]

BLAST of IVF0002604 vs. ExPASy Swiss-Prot
Match: Q6Z4T5 (DNA polymerase I A, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0175300 PE=2 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 1.2e-71
Identity = 136/183 (74.32%), Postives = 154/183 (84.15%), Query Frame = 0


Query: 1    MQDAFASERRKAKMLNFSIAYGKTPVGLSKDWKVSLEEAKKTVNLWYNERKEVREWQDLR 60
            ++DAF +ERRKAKMLNFSIAYGKT VGLS DWKVS+ EA+ T+ LWY +RKEV  WQ  +
Sbjct: 847  LKDAFGAERRKAKMLNFSIAYGKTAVGLSWDWKVSVREARDTLKLWYRDRKEVSAWQKKQ 906

Query: 61   MAEAAEESCVRTLLGRARRFPSMKHATRFQKGHIERAAINTPVQGSAADVAMCAMLEISK 120
             A A E+  V TLLGR+R+FP+M HA   QKGH+ERAAIN PVQGSAADVAMCAMLEI +
Sbjct: 907  KAFALEKCEVYTLLGRSRQFPNMTHAGPGQKGHVERAAINAPVQGSAADVAMCAMLEIER 966

Query: 121  NSRLRELGWRLLLQVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILNVDLAVDAKCA 180
            N+RL+ELGWRLLLQVHDEVILEGPTESAE AK IVVECMSKPF G NIL VDLAVDAK A
Sbjct: 967  NARLKELGWRLLLQVHDEVILEGPTESAEEAKTIVVECMSKPFYGTNILKVDLAVDAKYA 1026

Query: 181  QNW 184
            ++W
Sbjct: 1027 KSW 1029

[Close]

BLAST of IVF0002604 vs. ExPASy Swiss-Prot
Match: Q6Z4T3 (DNA polymerase I B, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0175600 PE=3 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 4.9e-70
Identity = 132/183 (72.13%), Postives = 153/183 (83.61%), Query Frame = 0


Query: 1    MQDAFASERRKAKMLNFSIAYGKTPVGLSKDWKVSLEEAKKTVNLWYNERKEVREWQDLR 60
            ++DAF +ERRKAKMLNFSIAYGKT VGLS+DW V + EA+ T+ LW+ +RKE+  WQ  +
Sbjct: 849  LKDAFGAERRKAKMLNFSIAYGKTAVGLSQDWNVEVREARDTLKLWHRDRKEISAWQKKQ 908

Query: 61   MAEAAEESCVRTLLGRARRFPSMKHATRFQKGHIERAAINTPVQGSAADVAMCAMLEISK 120
             A A E+  V TLLGR+R+FP+M HA   QK H+ERAAIN PVQGSAADVAMCAMLEI +
Sbjct: 909  KALAFEKCEVYTLLGRSRQFPNMTHAGPGQKSHVERAAINAPVQGSAADVAMCAMLEIER 968

Query: 121  NSRLRELGWRLLLQVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILNVDLAVDAKCA 180
            N+RL+ELGWRLLLQVHDEVILEGPTESAE AKAIVVECMSKPF G NIL VDLAVDAK A
Sbjct: 969  NARLKELGWRLLLQVHDEVILEGPTESAEEAKAIVVECMSKPFYGTNILKVDLAVDAKYA 1028

Query: 181  QNW 184
            ++W
Sbjct: 1029 KSW 1031

[Close]

BLAST of IVF0002604 vs. ExPASy Swiss-Prot
Match: Q59156 (DNA polymerase I OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320) OX=521460 GN=polA PE=3 SV=2)

HSP 1 Score: 114.4 bits (285), Expect = 1.4e-24
Identity = 62/181 (34.25%), Postives = 100/181 (55.25%), Query Frame = 0


Query: 3   DAFASERRKAKMLNFSIAYGKTPVGLSKDWKVSLEEAKKTVNLWYNERKEVREWQDLRMA 62
           D     R +AK +NF I YG +  GL++D K+S +EA + +N ++    +V+E+ D  + 
Sbjct: 670 DVTPEMRSQAKAVNFGIVYGISDYGLARDIKISRKEAAEFINKYFERYPKVKEYLDNTVK 729

Query: 63  EAAEESCVRTLLGRARRFPSMKHATRFQKGHIERAAINTPVQGSAADVAMCAMLEISKNS 122
            A +   V TL  R R    +K   R  +G+ ER A+N+P+QGSAAD+   AM+++ +  
Sbjct: 730 FARDNGFVLTLFNRKRYIKDIKSTNRNLRGYAERIAMNSPIQGSAADIMKLAMIKVYQKL 789

Query: 123 RLRELGWRLLLQVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILNVDLAVDAKCAQN 182
           +   L  +++LQVHDE+++E P E  ++ K IV     +       L V L V+ K   N
Sbjct: 790 KENNLKSKIILQVHDELLIEAPYEEKDIVKEIV----KREMENAVALKVPLVVEVKEGLN 846

Query: 183 W 184
           W
Sbjct: 850 W 846

[Close]

BLAST of IVF0002604 vs. ExPASy TrEMBL
Match: A0A1S4E473 (DNA polymerase I B, chloroplastic/mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103501625 PE=3 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 4.5e-98
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1    MQDAFASERRKAKMLNFSIAYGKTPVGLSKDWKVSLEEAKKTVNLWYNERKEVREWQDLR 60
            MQDAFASERRKAKMLNFSIAYGKTPVGLSKDWKVSLEEAKKTVNLWYNERKEVREWQDLR
Sbjct: 844  MQDAFASERRKAKMLNFSIAYGKTPVGLSKDWKVSLEEAKKTVNLWYNERKEVREWQDLR 903

Query: 61   MAEAAEESCVRTLLGRARRFPSMKHATRFQKGHIERAAINTPVQGSAADVAMCAMLEISK 120
            MAEAAEESCVRTLLGRARRFPSMKHATRFQKGHIERAAINTPVQGSAADVAMCAMLEISK
Sbjct: 904  MAEAAEESCVRTLLGRARRFPSMKHATRFQKGHIERAAINTPVQGSAADVAMCAMLEISK 963

Query: 121  NSRLRELGWRLLLQVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILNVDLAVDAKCA 180
            NSRLRELGWRLLLQVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILNVDLAVDAKCA
Sbjct: 964  NSRLRELGWRLLLQVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILNVDLAVDAKCA 1023

Query: 181  QNW 184
            QNW
Sbjct: 1024 QNW 1026

[Close]

BLAST of IVF0002604 vs. ExPASy TrEMBL
Match: A0A5A7STI8 (DNA polymerase I B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold925G00520 PE=3 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 5.4e-96
Identity = 180/182 (98.90%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1    MQDAFASERRKAKMLNFSIAYGKTPVGLSKDWKVSLEEAKKTVNLWYNERKEVREWQDLR 60
            ++DAFASERRKAKMLNFSIAYGKTPVGLSKDWKVSLEEAKKTVNLWYNERKEVREWQDLR
Sbjct: 941  LKDAFASERRKAKMLNFSIAYGKTPVGLSKDWKVSLEEAKKTVNLWYNERKEVREWQDLR 1000

Query: 61   MAEAAEESCVRTLLGRARRFPSMKHATRFQKGHIERAAINTPVQGSAADVAMCAMLEISK 120
            MAEAAEESCVRTLLGRARRFPSMKHATRFQKGHIERAAINTPVQGSAADVAMCAMLEISK
Sbjct: 1001 MAEAAEESCVRTLLGRARRFPSMKHATRFQKGHIERAAINTPVQGSAADVAMCAMLEISK 1060

Query: 121  NSRLRELGWRLLLQVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILNVDLAVDAKCA 180
            NSRLRELGWRLLLQVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILNVDLAVDAKCA
Sbjct: 1061 NSRLRELGWRLLLQVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILNVDLAVDAKCA 1120

Query: 181  QN 183
            QN
Sbjct: 1121 QN 1122

[Close]

BLAST of IVF0002604 vs. ExPASy TrEMBL
Match: A0A0A0L6C2 (POLAc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G078000 PE=3 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 9.6e-93
Identity = 173/183 (94.54%), Postives = 178/183 (97.27%), Query Frame = 0


Query: 1    MQDAFASERRKAKMLNFSIAYGKTPVGLSKDWKVSLEEAKKTVNLWYNERKEVREWQDLR 60
            ++DAFASERRKAKMLNFSIAYGKTPVGLS+DWKVSLEEAKKTV LWYNERKEVREWQDLR
Sbjct: 825  LKDAFASERRKAKMLNFSIAYGKTPVGLSRDWKVSLEEAKKTVKLWYNERKEVREWQDLR 884

Query: 61   MAEAAEESCVRTLLGRARRFPSMKHATRFQKGHIERAAINTPVQGSAADVAMCAMLEISK 120
            MAEAAE SCVRTLLGRAR+FPSMK+ATRFQKGHIERAAINTPVQGSAADVAMCAMLEISK
Sbjct: 885  MAEAAESSCVRTLLGRARQFPSMKYATRFQKGHIERAAINTPVQGSAADVAMCAMLEISK 944

Query: 121  NSRLRELGWRLLLQVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILNVDLAVDAKCA 180
            NSRLRELGWRLLLQVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNIL VDL VDAKC 
Sbjct: 945  NSRLRELGWRLLLQVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILKVDLVVDAKCE 1004

Query: 181  QNW 184
            QNW
Sbjct: 1005 QNW 1007

[Close]

BLAST of IVF0002604 vs. ExPASy TrEMBL
Match: A0A6J1IIP1 (DNA polymerase I A, chloroplastic/mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111476616 PE=3 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 4.5e-90
Identity = 168/183 (91.80%), Postives = 176/183 (96.17%), Query Frame = 0


Query: 1    MQDAFASERRKAKMLNFSIAYGKTPVGLSKDWKVSLEEAKKTVNLWYNERKEVREWQDLR 60
            ++DAF SERRKAKMLNFSIAYGKTPVGLSKDWKV++EEAK+TV+LWYNERKEVR WQ+LR
Sbjct: 941  LKDAFGSERRKAKMLNFSIAYGKTPVGLSKDWKVTVEEAKQTVDLWYNERKEVRSWQNLR 1000

Query: 61   MAEAAEESCVRTLLGRARRFPSMKHATRFQKGHIERAAINTPVQGSAADVAMCAMLEISK 120
              EA E+SCVRTLLGRARRFPSMKHATR  KGHIERAAINTPVQGSAADVAMCAMLEISK
Sbjct: 1001 KREAEEKSCVRTLLGRARRFPSMKHATRAHKGHIERAAINTPVQGSAADVAMCAMLEISK 1060

Query: 121  NSRLRELGWRLLLQVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILNVDLAVDAKCA 180
            NSRLRELGWRLLLQVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILNVDLAVDAKCA
Sbjct: 1061 NSRLRELGWRLLLQVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILNVDLAVDAKCA 1120

Query: 181  QNW 184
            QNW
Sbjct: 1121 QNW 1123

[Close]

BLAST of IVF0002604 vs. ExPASy TrEMBL
Match: A0A6J1FW48 (DNA polymerase I B, chloroplastic/mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111447420 PE=3 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 3.2e-88
Identity = 165/183 (90.16%), Postives = 174/183 (95.08%), Query Frame = 0


Query: 1    MQDAFASERRKAKMLNFSIAYGKTPVGLSKDWKVSLEEAKKTVNLWYNERKEVREWQDLR 60
            ++DAF SERRKAKMLNFSIAYGKTPVGLSKDWKV++EEAK+TV+LWYNERKEVR WQ+LR
Sbjct: 941  LKDAFGSERRKAKMLNFSIAYGKTPVGLSKDWKVTVEEAKQTVDLWYNERKEVRTWQNLR 1000

Query: 61   MAEAAEESCVRTLLGRARRFPSMKHATRFQKGHIERAAINTPVQGSAADVAMCAMLEISK 120
              EA E+SCVRTLLGRARRFPSM HATR  KGHIERAAINTPVQGSAADVAMCAMLEIS 
Sbjct: 1001 KREAEEKSCVRTLLGRARRFPSMTHATRAHKGHIERAAINTPVQGSAADVAMCAMLEISN 1060

Query: 121  NSRLRELGWRLLLQVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILNVDLAVDAKCA 180
            NSRLRELGWRLLLQVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILNVDLAVDAKCA
Sbjct: 1061 NSRLRELGWRLLLQVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILNVDLAVDAKCA 1120

Query: 181  QNW 184
            +NW
Sbjct: 1121 RNW 1123

[Close]

BLAST of IVF0002604 vs. NCBI nr
Match: XP_016903028.1 (PREDICTED: DNA polymerase I B, chloroplastic/mitochondrial-like [Cucumis melo])

HSP 1 Score: 362 bits (930), Expect = 8.47e-116
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1    MQDAFASERRKAKMLNFSIAYGKTPVGLSKDWKVSLEEAKKTVNLWYNERKEVREWQDLR 60
            MQDAFASERRKAKMLNFSIAYGKTPVGLSKDWKVSLEEAKKTVNLWYNERKEVREWQDLR
Sbjct: 844  MQDAFASERRKAKMLNFSIAYGKTPVGLSKDWKVSLEEAKKTVNLWYNERKEVREWQDLR 903

Query: 61   MAEAAEESCVRTLLGRARRFPSMKHATRFQKGHIERAAINTPVQGSAADVAMCAMLEISK 120
            MAEAAEESCVRTLLGRARRFPSMKHATRFQKGHIERAAINTPVQGSAADVAMCAMLEISK
Sbjct: 904  MAEAAEESCVRTLLGRARRFPSMKHATRFQKGHIERAAINTPVQGSAADVAMCAMLEISK 963

Query: 121  NSRLRELGWRLLLQVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILNVDLAVDAKCA 180
            NSRLRELGWRLLLQVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILNVDLAVDAKCA
Sbjct: 964  NSRLRELGWRLLLQVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILNVDLAVDAKCA 1023

Query: 181  QNW 183
            QNW
Sbjct: 1024 QNW 1026

[Close]

BLAST of IVF0002604 vs. NCBI nr
Match: KAA0033948.1 (DNA polymerase I B [Cucumis melo var. makuwa] >TYK02596.1 DNA polymerase I B [Cucumis melo var. makuwa])

HSP 1 Score: 355 bits (912), Expect = 2.30e-112
Identity = 180/182 (98.90%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1    MQDAFASERRKAKMLNFSIAYGKTPVGLSKDWKVSLEEAKKTVNLWYNERKEVREWQDLR 60
            ++DAFASERRKAKMLNFSIAYGKTPVGLSKDWKVSLEEAKKTVNLWYNERKEVREWQDLR
Sbjct: 941  LKDAFASERRKAKMLNFSIAYGKTPVGLSKDWKVSLEEAKKTVNLWYNERKEVREWQDLR 1000

Query: 61   MAEAAEESCVRTLLGRARRFPSMKHATRFQKGHIERAAINTPVQGSAADVAMCAMLEISK 120
            MAEAAEESCVRTLLGRARRFPSMKHATRFQKGHIERAAINTPVQGSAADVAMCAMLEISK
Sbjct: 1001 MAEAAEESCVRTLLGRARRFPSMKHATRFQKGHIERAAINTPVQGSAADVAMCAMLEISK 1060

Query: 121  NSRLRELGWRLLLQVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILNVDLAVDAKCA 180
            NSRLRELGWRLLLQVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILNVDLAVDAKCA
Sbjct: 1061 NSRLRELGWRLLLQVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILNVDLAVDAKCA 1120

Query: 181  QN 182
            QN
Sbjct: 1121 QN 1122

[Close]

BLAST of IVF0002604 vs. NCBI nr
Match: XP_004152920.2 (DNA polymerase I B, chloroplastic/mitochondrial [Cucumis sativus] >KAE8650138.1 hypothetical protein Csa_009786 [Cucumis sativus])

HSP 1 Score: 345 bits (884), Expect = 2.22e-108
Identity = 173/183 (94.54%), Postives = 178/183 (97.27%), Query Frame = 0


Query: 1    MQDAFASERRKAKMLNFSIAYGKTPVGLSKDWKVSLEEAKKTVNLWYNERKEVREWQDLR 60
            ++DAFASERRKAKMLNFSIAYGKTPVGLS+DWKVSLEEAKKTV LWYNERKEVREWQDLR
Sbjct: 940  LKDAFASERRKAKMLNFSIAYGKTPVGLSRDWKVSLEEAKKTVKLWYNERKEVREWQDLR 999

Query: 61   MAEAAEESCVRTLLGRARRFPSMKHATRFQKGHIERAAINTPVQGSAADVAMCAMLEISK 120
            MAEAAE SCVRTLLGRAR+FPSMK+ATRFQKGHIERAAINTPVQGSAADVAMCAMLEISK
Sbjct: 1000 MAEAAESSCVRTLLGRARQFPSMKYATRFQKGHIERAAINTPVQGSAADVAMCAMLEISK 1059

Query: 121  NSRLRELGWRLLLQVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILNVDLAVDAKCA 180
            NSRLRELGWRLLLQVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNIL VDL VDAKC 
Sbjct: 1060 NSRLRELGWRLLLQVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILKVDLVVDAKCE 1119

Query: 181  QNW 183
            QNW
Sbjct: 1120 QNW 1122

[Close]

BLAST of IVF0002604 vs. NCBI nr
Match: XP_038903188.1 (DNA polymerase I B, chloroplastic/mitochondrial-like [Benincasa hispida])

HSP 1 Score: 337 bits (864), Expect = 9.34e-106
Identity = 170/183 (92.90%), Postives = 176/183 (96.17%), Query Frame = 0


Query: 1    MQDAFASERRKAKMLNFSIAYGKTPVGLSKDWKVSLEEAKKTVNLWYNERKEVREWQDLR 60
            ++DAFASERRKAKMLNFSIAYGKTPVGLSKDWKV++EEAKKTVNLWYNERKEVR WQDLR
Sbjct: 898  LKDAFASERRKAKMLNFSIAYGKTPVGLSKDWKVTVEEAKKTVNLWYNERKEVRMWQDLR 957

Query: 61   MAEAAEESCVRTLLGRARRFPSMKHATRFQKGHIERAAINTPVQGSAADVAMCAMLEISK 120
            M EA E+SCVRTLLGRARRFPSMK ATR QKGHI RAAINTPVQGSAADVAMCAMLEISK
Sbjct: 958  MEEAEEKSCVRTLLGRARRFPSMKFATRAQKGHIARAAINTPVQGSAADVAMCAMLEISK 1017

Query: 121  NSRLRELGWRLLLQVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILNVDLAVDAKCA 180
            NSRL+ELGWRLLLQVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNIL VDLAVDAKCA
Sbjct: 1018 NSRLKELGWRLLLQVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILKVDLAVDAKCA 1077

Query: 181  QNW 183
            QNW
Sbjct: 1078 QNW 1080

[Close]

BLAST of IVF0002604 vs. NCBI nr
Match: XP_022976145.1 (DNA polymerase I A, chloroplastic/mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 336 bits (861), Expect = 4.82e-105
Identity = 168/183 (91.80%), Postives = 176/183 (96.17%), Query Frame = 0


Query: 1    MQDAFASERRKAKMLNFSIAYGKTPVGLSKDWKVSLEEAKKTVNLWYNERKEVREWQDLR 60
            ++DAF SERRKAKMLNFSIAYGKTPVGLSKDWKV++EEAK+TV+LWYNERKEVR WQ+LR
Sbjct: 941  LKDAFGSERRKAKMLNFSIAYGKTPVGLSKDWKVTVEEAKQTVDLWYNERKEVRSWQNLR 1000

Query: 61   MAEAAEESCVRTLLGRARRFPSMKHATRFQKGHIERAAINTPVQGSAADVAMCAMLEISK 120
              EA E+SCVRTLLGRARRFPSMKHATR  KGHIERAAINTPVQGSAADVAMCAMLEISK
Sbjct: 1001 KREAEEKSCVRTLLGRARRFPSMKHATRAHKGHIERAAINTPVQGSAADVAMCAMLEISK 1060

Query: 121  NSRLRELGWRLLLQVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILNVDLAVDAKCA 180
            NSRLRELGWRLLLQVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILNVDLAVDAKCA
Sbjct: 1061 NSRLRELGWRLLLQVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILNVDLAVDAKCA 1120

Query: 181  QNW 183
            QNW
Sbjct: 1121 QNW 1123

[Close]

BLAST of IVF0002604 vs. TAIR 10
Match: AT3G20540.1 (polymerase gamma 1 )

HSP 1 Score: 289.3 bits (739), Expect = 2.3e-78
Identity = 143/183 (78.14%), Postives = 164/183 (89.62%), Query Frame = 0


Query: 1    MQDAFASERRKAKMLNFSIAYGKTPVGLSKDWKVSLEEAKKTVNLWYNERKEVREWQDLR 60
            ++DAFASERRKAKMLNFSIAYGKT +GLS+DWKVS EEA+ TVNLWYN+R+EVR+WQ+LR
Sbjct: 850  LKDAFASERRKAKMLNFSIAYGKTAIGLSRDWKVSREEAQDTVNLWYNDRQEVRKWQELR 909

Query: 61   MAEAAEESCVRTLLGRARRFPSMKHATRFQKGHIERAAINTPVQGSAADVAMCAMLEISK 120
              EA ++  V TLLGRAR+FP  ++ +R QK HIERAAINTPVQGSAADVAMCAMLEIS 
Sbjct: 910  KKEAIQKGYVLTLLGRARKFP--EYRSRAQKNHIERAAINTPVQGSAADVAMCAMLEISN 969

Query: 121  NSRLRELGWRLLLQVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILNVDLAVDAKCA 180
            N RL+ELGW+LLLQVHDEVILEGP+ESAE AK IVV CMS+PFNGKNIL+VDL+VDAKCA
Sbjct: 970  NQRLKELGWKLLLQVHDEVILEGPSESAENAKDIVVNCMSEPFNGKNILSVDLSVDAKCA 1029

Query: 181  QNW 184
            QNW
Sbjct: 1030 QNW 1030

[Close]

BLAST of IVF0002604 vs. TAIR 10
Match: AT3G20540.2 (polymerase gamma 1 )

HSP 1 Score: 289.3 bits (739), Expect = 2.3e-78
Identity = 143/183 (78.14%), Postives = 164/183 (89.62%), Query Frame = 0


Query: 1    MQDAFASERRKAKMLNFSIAYGKTPVGLSKDWKVSLEEAKKTVNLWYNERKEVREWQDLR 60
            ++DAFASERRKAKMLNFSIAYGKT +GLS+DWKVS EEA+ TVNLWYN+R+EVR+WQ+LR
Sbjct: 865  LKDAFASERRKAKMLNFSIAYGKTAIGLSRDWKVSREEAQDTVNLWYNDRQEVRKWQELR 924

Query: 61   MAEAAEESCVRTLLGRARRFPSMKHATRFQKGHIERAAINTPVQGSAADVAMCAMLEISK 120
              EA ++  V TLLGRAR+FP  ++ +R QK HIERAAINTPVQGSAADVAMCAMLEIS 
Sbjct: 925  KKEAIQKGYVLTLLGRARKFP--EYRSRAQKNHIERAAINTPVQGSAADVAMCAMLEISN 984

Query: 121  NSRLRELGWRLLLQVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILNVDLAVDAKCA 180
            N RL+ELGW+LLLQVHDEVILEGP+ESAE AK IVV CMS+PFNGKNIL+VDL+VDAKCA
Sbjct: 985  NQRLKELGWKLLLQVHDEVILEGPSESAENAKDIVVNCMSEPFNGKNILSVDLSVDAKCA 1044

Query: 181  QNW 184
            QNW
Sbjct: 1045 QNW 1045

[Close]

BLAST of IVF0002604 vs. TAIR 10
Match: AT1G50840.1 (polymerase gamma 2 )

HSP 1 Score: 284.6 bits (727), Expect = 5.6e-77
Identity = 138/183 (75.41%), Postives = 165/183 (90.16%), Query Frame = 0


Query: 1    MQDAFASERRKAKMLNFSIAYGKTPVGLSKDWKVSLEEAKKTVNLWYNERKEVREWQDLR 60
            ++DAF SERRKAKMLNFSIAYGKT VGLS+DWKVS +EA++TV+LWYN+R+EVR+WQ++R
Sbjct: 866  LKDAFGSERRKAKMLNFSIAYGKTAVGLSRDWKVSTKEAQETVDLWYNDRQEVRKWQEMR 925

Query: 61   MAEAAEESCVRTLLGRARRFPSMKHATRFQKGHIERAAINTPVQGSAADVAMCAMLEISK 120
              EA E+  V TLLGR+RRFP+ K  +R Q+ HI+RAAINTPVQGSAADVAMCAMLEIS 
Sbjct: 926  KKEAIEDGYVLTLLGRSRRFPASK--SRAQRNHIQRAAINTPVQGSAADVAMCAMLEISI 985

Query: 121  NSRLRELGWRLLLQVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILNVDLAVDAKCA 180
            N +L++LGWRLLLQ+HDEVILEGP ESAE+AK IVV+CMSKPFNG+NIL+VDL+VDAKCA
Sbjct: 986  NQQLKKLGWRLLLQIHDEVILEGPIESAEIAKDIVVDCMSKPFNGRNILSVDLSVDAKCA 1045

Query: 181  QNW 184
            QNW
Sbjct: 1046 QNW 1046

[Close]

BLAST of IVF0002604 vs. TAIR 10
Match: AT4G32700.2 (helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding )

HSP 1 Score: 69.3 bits (168), Expect = 3.7e-12
Identity = 53/193 (27.46%), Postives = 88/193 (45.60%), Query Frame = 0


Query: 8    ERRKAKMLNFSIAYGKTPVGLSKDWKVSLEEAKKTVNLWYNERKEVREWQDLRMAEAAEE 67
            +R + K L + I YG     L++  + + +EAK+ +  + +    V  W +  ++   E+
Sbjct: 1957 DRDQTKRLIYGILYGMGANRLAEQLECTSDEAKEKIRSFKSSFPAVTSWLNETISFCQEK 2016

Query: 68   SCVRTLLGRARRFPSMKHATRFQKGHIERAAINTPVQGSAADVAMCAMLEI--------- 127
              ++TL GR R    +K     +K   +R A+N+  QGSAAD+   AM+ I         
Sbjct: 2017 GYIQTLKGRRRFLSKIKFGNAKEKSKAQRQAVNSMCQGSAADIIKIAMINIYSAIAEDVD 2076

Query: 128  ------SKNSRLREL--GWRLLLQVHDEVILEGPTESAEVAKAIVVECMSKPFNGKNILN 184
                  S  +R   L    R+LLQVHDE++LE      ++A  ++   M    +    L 
Sbjct: 2077 TAASSSSSETRFHMLKGRCRILLQVHDELVLEVDPSYVKLAAMLLQTSMENAVS----LL 2136

The following BLAST results are available for this feature:

BLAST of IVF0002604 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84ND9	3.2e-77	78.14	DNA polymerase I B, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 ...	[more]
F4I6M1	7.9e-76	75.41	DNA polymerase I A, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 ...	[more]
Q6Z4T5	1.2e-71	74.32	DNA polymerase I A, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os...	[more]
Q6Z4T3	4.9e-70	72.13	DNA polymerase I B, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os...	[more]
Q59156	1.4e-24	34.25	DNA polymerase I OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725...	[more]

BLAST of IVF0002604 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E473	4.5e-98	100.00	DNA polymerase I B, chloroplastic/mitochondrial-like OS=Cucumis melo OX=3656 GN=...	[more]
A0A5A7STI8	5.4e-96	98.90	DNA polymerase I B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold925G0...	[more]
A0A0A0L6C2	9.6e-93	94.54	POLAc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G078000 PE=3 ...	[more]
A0A6J1IIP1	4.5e-90	91.80	DNA polymerase I A, chloroplastic/mitochondrial-like OS=Cucurbita maxima OX=3661...	[more]
A0A6J1FW48	3.2e-88	90.16	DNA polymerase I B, chloroplastic/mitochondrial-like OS=Cucurbita moschata OX=36...	[more]

BLAST of IVF0002604 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016903028.1	8.47e-116	100.00	PREDICTED: DNA polymerase I B, chloroplastic/mitochondrial-like [Cucumis melo]	[more]
KAA0033948.1	2.30e-112	98.90	DNA polymerase I B [Cucumis melo var. makuwa] >TYK02596.1 DNA polymerase I B [Cu...	[more]
XP_004152920.2	2.22e-108	94.54	DNA polymerase I B, chloroplastic/mitochondrial [Cucumis sativus] >KAE8650138.1 ...	[more]
XP_038903188.1	9.34e-106	92.90	DNA polymerase I B, chloroplastic/mitochondrial-like [Benincasa hispida]	[more]
XP_022976145.1	4.82e-105	91.80	DNA polymerase I A, chloroplastic/mitochondrial-like [Cucurbita maxima]	[more]

BLAST of IVF0002604 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20540.1	2.3e-78	78.14	polymerase gamma 1	[more]
AT3G20540.2	2.3e-78	78.14	polymerase gamma 1	[more]
AT1G50840.1	5.6e-77	75.41	polymerase gamma 2	[more]
AT4G32700.2	3.7e-12	27.46	helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed ...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002298	DNA polymerase A	PRINTS	PR00868	DNAPOLI	coord: 68..79 score: 45.19 coord: 9..34 score: 40.09 coord: 100..116 score: 56.33 coord: 130..143 score: 67.86
IPR002298	DNA polymerase A	PANTHER	PTHR10133	DNA POLYMERASE I	coord: 2..184
IPR001098	DNA-directed DNA polymerase, family A, palm domain	SMART	SM00482	polaultra3	coord: 1..147 e-value: 1.3E-10 score: 36.7
IPR001098	DNA-directed DNA polymerase, family A, palm domain	PFAM	PF00476	DNA_pol_A	coord: 6..183 e-value: 9.4E-45 score: 153.3
None	No IPR available	GENE3D	1.10.150.20		coord: 2..107 e-value: 4.1E-29 score: 103.1
None	No IPR available	PANTHER	PTHR10133:SF53	DNA POLYMERASE I A, CHLOROPLASTIC/MITOCHONDRIAL	coord: 2..184
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 6..183

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0002604.2	IVF0002604.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0006261	DNA-dependent DNA replication
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006260	DNA replication
molecular_function	GO:0008408	3'-5' exonuclease activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003887	DNA-directed DNA polymerase activity