IVF0002594 (gene) Melon (IVF77) v1

Overview


Name	IVF0002594
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	DDE Tnp4 domain-containing protein
Location	chr02: 13069602 .. 13070762 (-)
RNA-Seq Expression	IVF0002594
Synteny	IVF0002594

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGATGTTGATGGAGAGGCTTATTCCAAAATACTGAAACTCTTGCACAGAGATCTTGCTTGGAGAAAGCTATTTTTGCGCATGCCCGATTCAAGGAAGAGAGATTTCATAAATAGTCTTTAGATGTCACTTAGGAATTGTTTTAGGATTATGTCATCTACTTTTTAATATTAGACTTGAACATGGATTTTGTATGTTTGACATTATGGTTTGGGAAAGTTACATAAATTTTCTTTTCTCTTCCATTTTCGTCTGTTTCTTTTCTTCTTTTTTTTTTCAAACTATTATTTGGTTCATCGTGTATTATTTAGATTGGAGTAGTCAAATGTAAACGATCGTGTAAAAAAAATAAATTATCATGCAGACAAATCTAAACGATCGTGTACCAAAAAAATTAAAAAAATAAATCTAAATGACCGTGTACCAAATTTTGAGCAAAATCTAAACGATTGTGTACCAAATTTTAAACCAAATCTAAACAATCATGTACCATATTTTGAAAAAAAAATCATTTAGCCTTGGGTCCAAATCTAAACGATCGTGTAACCAAATTTAAATGTAACCAAATTAAACGATCGTGTAACAAAAGTAAACGATAGAATTGAAAAAATAACCAAATCTAAATGATCGTATACCAAATATATTTAACATGACTATGTTGTATGTACTGAGATGAATTTGTACCTTTTTTGTGTTTGATTTAGGGATATACTAGTGAATTGATATGGACTTGATTCAAGATAATCATTCTGATGACGATTTGATTCTGACGATGATGACGATGGTATCTTCATCCTTTTTACTTTATTTTACATGAGCTTGCACATGATACAATCTTCAAAACGATTATGTAGAACCTCTGCACTGAGAGGTCATGATTATGTGATTGAGTTGTTAAGCGGAAACGATAGTAGATGTTTTGATTGTTTTAGGATGAAAAGAATTACATTCATAAGGTTTTGTGAAGATTTAAAATCAAAGATGAATCTGAAATCATCTAGATATCTTACCATTCACGGAAAAGTTGCTATATTCTTATTAATCATATCACATAATGAAAACAATCGTATAGCAGCCGAAAGATTTCAACATTCGAGTCATACTATTTCTCTAGCTTTTAACCTTATTTTGAGGAAAGTTTGCAAGCTTGGTAGATAA

mRNA sequence

ATGGAGGATGTTGATGGAGAGGCTTATTCCAAAATACTGAAACTCTTGCACAGAGATCTTGCTTGGAGAAAGCTATTTTTGCGCATGCCCGATTCAAGGAAGAGAGATTTCATAAATAGTCATGATTATGTGATTGAGTTGTTAAGCGGAAACGATAGTAGATGTTTTGATTGTTTTAGGATGAAAAGAATTACATTCATAAGGTTTTGTGAAGATTTAAAATCAAAGATGAATCTGAAATCATCTAGATATCTTACCATTCACGGAAAAGTTGCTATATTCTTATTAATCATATCACATAATGAAAACAATCGTATAGCAGCCGAAAGATTTCAACATTCGAGTCATACTATTTCTCTAGCTTTTAACCTTATTTTGAGGAAAGTTTGCAAGCTTGGTAGATAA

Coding sequence (CDS)

ATGGAGGATGTTGATGGAGAGGCTTATTCCAAAATACTGAAACTCTTGCACAGAGATCTTGCTTGGAGAAAGCTATTTTTGCGCATGCCCGATTCAAGGAAGAGAGATTTCATAAATAGTCATGATTATGTGATTGAGTTGTTAAGCGGAAACGATAGTAGATGTTTTGATTGTTTTAGGATGAAAAGAATTACATTCATAAGGTTTTGTGAAGATTTAAAATCAAAGATGAATCTGAAATCATCTAGATATCTTACCATTCACGGAAAAGTTGCTATATTCTTATTAATCATATCACATAATGAAAACAATCGTATAGCAGCCGAAAGATTTCAACATTCGAGTCATACTATTTCTCTAGCTTTTAACCTTATTTTGAGGAAAGTTTGCAAGCTTGGTAGATAA

Protein sequence

MEDVDGEAYSKILKLLHRDLAWRKLFLRMPDSRKRDFINSHDYVIELLSGNDSRCFDCFRMKRITFIRFCEDLKSKMNLKSSRYLTIHGKVAIFLLIISHNENNRIAAERFQHSSHTISLAFNLILRKVCKLGR

Homology

[Close]

BLAST of IVF0002594 vs. ExPASy TrEMBL
Match: A0A0A0LCZ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G398940 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 4.1e-37
Identity = 91/170 (53.53%), Postives = 100/170 (58.82%), Query Frame = 0


Query: 1   MEDVDGEAYSKILKLLHRDLAWRKLFLRMPDSRKRDFINSHDYVIELLSGNDSRCFDCFR 60
           M+DVDGEAY KILKL H                       HDYVIELL+GNDSRCFDCFR
Sbjct: 1   MDDVDGEAYFKILKLFH----------------------GHDYVIELLNGNDSRCFDCFR 60

Query: 61  MKRITFIRFCEDLKSKMNL-------------------------------------KSSR 120
            +R+TF+RFCEDLKSK NL                                     K+SR
Sbjct: 61  RRRVTFVRFCEDLKSKTNLKKASRYLTVQEKVAIFLLIKASRYLTVQEKVAIFLLIKASR 120

Query: 121 YLTIHGKVAIFLLIISHNENNRIAAERFQHSSHTISLAFNLILRKVCKLG 134
           YLT+  KVAIFLLIISHNE+NRI  ERFQHS HTISLAFN +LRKVCKLG
Sbjct: 121 YLTVQEKVAIFLLIISHNESNRIVVERFQHSGHTISLAFNRVLRKVCKLG 148

[Close]

BLAST of IVF0002594 vs. ExPASy TrEMBL
Match: A0A6A4KNZ4 (Myb_DNA-bind_3 domain-containing protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_22962 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 9.4e-26
Identity = 63/142 (44.37%), Postives = 90/142 (63.38%), Query Frame = 0


Query: 1   MEDVDGEAYSKILKLLHRDLAWRKLFLRMPDSRKR----------------DFINSHDYV 60
           MED+  ++Y+ +L+ LH D+ WR++FL MP+ ++                 +F+  HDYV
Sbjct: 260 MEDLGEDSYNMVLEKLHGDVLWRQMFLDMPEKKENRLDQNTLDNLKFXKGLEFL-GHDYV 319

Query: 61  IELLSGNDSRCFDCFRMKRITFIRFCEDLKSKMNLKSSRYLTIHGKVAIFLLIISHNENN 120
           +E+L+G++ RC   FRMK   FI FCE LK   NLK SRYLT+  +V IFLL I HNE +
Sbjct: 320 LEVLNGHEDRCHQNFRMKPQVFIAFCEALKLHANLKHSRYLTLQEQVCIFLLTIGHNERD 379

Query: 121 RIAAERFQHSSHTISLAFNLIL 127
           R+  E FQHS HTIS+ F +++
Sbjct: 380 RVVQEIFQHSGHTISIYFLIVM 400

[Close]

BLAST of IVF0002594 vs. ExPASy TrEMBL
Match: A0A1S3E695 (protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1-like OS=Cicer arietinum OX=3827 GN=LOC105852030 PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 5.5e-18
Identity = 45/97 (46.39%), Postives = 67/97 (69.07%), Query Frame = 0


Query: 38  INSHDYVIELLSGNDSRCFDCFRMKRITFIRFCEDLKSKMNLKSSRYLTIHGKVAIFLLI 97
           ++  ++V E+L+G+++ CFD FRMK+  F+ FC +L+ K  L  SR + +  KVA FL I
Sbjct: 53  LSGREFVAEVLNGSETSCFDLFRMKKECFLNFCNELRGKNYLSDSRDVLVEEKVATFLFI 112

Query: 98  ISHNENNRIAAERFQHSSHTISLAFNLILRKVCKLGR 135
           I HN  +R+A+ RFQHS+ TIS  F  +LR VC+LG+
Sbjct: 113 IGHNVRHRVASNRFQHSTETISRNFKEVLRAVCRLGK 149

[Close]

BLAST of IVF0002594 vs. ExPASy TrEMBL
Match: A0A3Q7Y331 (protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1-like OS=Cicer arietinum OX=3827 GN=LOC105852522 PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 5.5e-18
Identity = 45/97 (46.39%), Postives = 67/97 (69.07%), Query Frame = 0


Query: 38  INSHDYVIELLSGNDSRCFDCFRMKRITFIRFCEDLKSKMNLKSSRYLTIHGKVAIFLLI 97
           ++  ++V E+L+G+++ CFD FRMK+  F+ FC +L+ K  L  SR + +  KVA FL I
Sbjct: 63  LSGREFVAEVLNGSETSCFDLFRMKKECFLNFCNELRGKNYLSDSRDVLVEEKVATFLFI 122

Query: 98  ISHNENNRIAAERFQHSSHTISLAFNLILRKVCKLGR 135
           I HN  +R+A+ RFQHS+ TIS  F  +LR VC+LG+
Sbjct: 123 IGHNVRHRVASNRFQHSTETISRNFKEVLRAVCRLGK 159

[Close]

BLAST of IVF0002594 vs. ExPASy TrEMBL
Match: A0A0R0GE91 (DDE Tnp4 domain-containing protein OS=Glycine max OX=3847 GN=GLYMA_14G172000 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.7e-17
Identity = 46/91 (50.55%), Postives = 64/91 (70.33%), Query Frame = 0


Query: 43  YVIELLSGNDSRCFDCFRMKRITFIRFCEDLKSKMNLKSSRYLTIHGKVAIFLLIISHNE 102
           Y I+ L G+++RC++ FRMK+  F+ FCE LK   NL   + ++I   VA+FL+II HN 
Sbjct: 7   YTIKFLVGHETRCYENFRMKKDVFMNFCETLKEVGNLCDGKKVSIEEAVAMFLIIICHNL 66

Query: 103 NNRIAAERFQHSSHTISLAFNLILRKVCKLG 134
            +R+ AERFQHS HT+S  F +IL+ VCKLG
Sbjct: 67  RHRVVAERFQHSLHTVSKWFRIILKTVCKLG 97

[Close]

BLAST of IVF0002594 vs. NCBI nr
Match: KAF3433792.1 (hypothetical protein FNV43_RR24895 [Rhamnella rubrinervis])

HSP 1 Score: 146 bits (368), Expect = 1.44e-37
Identity = 76/162 (46.91%), Postives = 102/162 (62.96%), Query Frame = 0


Query: 1   MEDVDGEAYSKILKLLHRD--------------------LAWRKLFLRMPDSRKRD---- 60
           M+++DG++YSK +KLLH D                    L +  L+L   +  + D    
Sbjct: 509 MDEIDGDSYSKAIKLLHDDVYMDLGDVDLSLFEDDDDDELIFIFLYLVCNEYAQIDSLRQ 568

Query: 61  -----FINSHDYVIELLSGNDSRCFDCFRMKRITFIRFCEDLKSKMNLKSSRYLTIHGKV 120
                 +  HDYV+ELL+G++SRC+DCFRM +  FI FCE+LKSK NLK+SR++T+  +V
Sbjct: 569 PCRTSLLRGHDYVLELLNGHESRCYDCFRMDKSVFITFCEELKSKTNLKNSRFVTVQEQV 628

Query: 121 AIFLLIISHNENNRIAAERFQHSSHTISLAFNLILRKVCKLG 133
           AIFLL I HNE NR+ AERFQHS  TIS  FN +L+KVC LG
Sbjct: 629 AIFLLTICHNERNRLVAERFQHSGETISRYFNHVLKKVCMLG 670

[Close]

BLAST of IVF0002594 vs. NCBI nr
Match: KAF7148819.1 (hypothetical protein RHSIM_Rhsim03G0151700 [Rhododendron simsii])

HSP 1 Score: 138 bits (347), Expect = 1.01e-34
Identity = 74/183 (40.44%), Postives = 99/183 (54.10%), Query Frame = 0


Query: 1   MEDVDGEAYSKILKLLHRDLAWRKLFLRMPDSR------KRDFIN--------------- 60
           M+D+D ++Y+K+L+ LH D+ WR++F+ MP+ R      K +F N               
Sbjct: 574 MDDLDEDSYNKVLEKLHGDILWRQMFMDMPEKRRIAWIKKFNFCNMDPICDHSDDDSEDE 633

Query: 61  -----------------------------SHDYVIELLSGNDSRCFDCFRMKRITFIRFC 120
                                         HDYV+E+L+G++ RC   FRMK   FI FC
Sbjct: 634 EVVVLLSLALYEYYNMYIDHRPCRTSILRGHDYVVEVLNGHEDRCHQNFRMKPQVFIAFC 693

Query: 121 EDLKSKMNLKSSRYLTIHGKVAIFLLIISHNENNRIAAERFQHSSHTISLAFNLILRKVC 133
           E LK   NLK SRYLT+  +V IFLL I HNE NR+  ERFQHS HTIS+ F+ +L+ VC
Sbjct: 694 EALKLHANLKHSRYLTLQEQVCIFLLTIGHNERNRVVQERFQHSGHTISIYFHRVLKAVC 753

[Close]

BLAST of IVF0002594 vs. NCBI nr
Match: KAF7123090.1 (hypothetical protein RHSIM_Rhsim12G0067000 [Rhododendron simsii])

HSP 1 Score: 137 bits (345), Expect = 1.25e-34
Identity = 74/182 (40.66%), Postives = 99/182 (54.40%), Query Frame = 0


Query: 1   MEDVDGEAYSKILKLLHRDLAWRKLFLRMPDSR------KRDFIN--------------- 60
           M+D+D ++Y+K+L+ LH D+ WR++F+ MP+ R      K +F N               
Sbjct: 222 MDDLDEDSYNKVLEKLHGDVLWRQMFMDMPERRRIAWIKKFNFCNMDPISDSDDDSEDEE 281

Query: 61  ----------------------------SHDYVIELLSGNDSRCFDCFRMKRITFIRFCE 120
                                        HDYV+E+L+G++ RC   FRMK   FI FCE
Sbjct: 282 VVVLLSLALYEYYDMYIDHRPCRTSMLRGHDYVLEVLNGHEDRCHQNFRMKPQVFIAFCE 341

Query: 121 DLKSKMNLKSSRYLTIHGKVAIFLLIISHNENNRIAAERFQHSSHTISLAFNLILRKVCK 133
            LK   NLK SRYLT+  +V IFLL I HNE NR+  ERFQHS HTIS+ F+ +L+ VCK
Sbjct: 342 ALKLHANLKHSRYLTLQEQVCIFLLTIGHNERNRVVQERFQHSGHTISIYFHRVLKAVCK 401

[Close]

BLAST of IVF0002594 vs. NCBI nr
Match: KAE9445141.1 (hypothetical protein C3L33_22962, partial [Rhododendron williamsianum])

HSP 1 Score: 127 bits (319), Expect = 5.40e-32
Identity = 63/142 (44.37%), Postives = 90/142 (63.38%), Query Frame = 0


Query: 1   MEDVDGEAYSKILKLLHRDLAWRKLFLRMPDSRKR----------------DFINSHDYV 60
           MED+  ++Y+ +L+ LH D+ WR++FL MP+ ++                 +F+  HDYV
Sbjct: 260 MEDLGEDSYNMVLEKLHGDVLWRQMFLDMPEKKENRLDQNTLDNLKFXKGLEFLG-HDYV 319

Query: 61  IELLSGNDSRCFDCFRMKRITFIRFCEDLKSKMNLKSSRYLTIHGKVAIFLLIISHNENN 120
           +E+L+G++ RC   FRMK   FI FCE LK   NLK SRYLT+  +V IFLL I HNE +
Sbjct: 320 LEVLNGHEDRCHQNFRMKPQVFIAFCEALKLHANLKHSRYLTLQEQVCIFLLTIGHNERD 379

Query: 121 RIAAERFQHSSHTISLAFNLIL 126
           R+  E FQHS HTIS+ F +++
Sbjct: 380 RVVQEIFQHSGHTISIYFLIVM 400

[Close]

BLAST of IVF0002594 vs. NCBI nr
Match: XP_020268890.1 (uncharacterized protein LOC109844313 [Asparagus officinalis])

HSP 1 Score: 114 bits (285), Expect = 4.90e-29
Identity = 57/132 (43.18%), Postives = 81/132 (61.36%), Query Frame = 0


Query: 3   DVDGEAYSKILKLLHRDLAWRKLFLRMPDSRKRDFINSHDYVIELLSGNDSRCFDCFRMK 62
           D D E +  +L  +H  + +   F+  P S++   ++ HD+VIE+L G+   CFD FRMK
Sbjct: 21  DSDEEQFV-VLLTIHAFMKFNGSFMEQPRSQRISKLSGHDWVIEVLGGHPGTCFDLFRMK 80

Query: 63  RITFIRFCEDLKSKMNLKSSRYLTIHGKVAIFLLIISHNENNRIAAERFQHSSHTISLAF 122
           +  FI  CE+LK    LK SR +TI  +VAIFL ++SHNE  R+ A+RFQHS  TIS  F
Sbjct: 81  KEAFINLCEELKRIGKLKHSRNVTIQEQVAIFLFVLSHNERQRMVADRFQHSLETISTYF 140

Query: 123 NLILRKVCKLGR 134
             +L  +C L +
Sbjct: 141 KRVLYAICSLTK 151

[Close]

BLAST of IVF0002594 vs. TAIR 10
Match: AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 53.9 bits (128), Expect = 1.1e-07
Identity = 30/94 (31.91%), Postives = 48/94 (51.06%), Query Frame = 0


Query: 39  NSHDYVIELLSGNDSRCFDCFRMKRITFIRFCEDLKSKMNLKSSRYLTIHGKVAIFLLII 98
           N  + +   +  N+  C    RM    F + CE L  K  L+SS  +++   VAIFL+I 
Sbjct: 8   NMEECIAHQIYSNEVSCQTLIRMSSEAFTQLCEILHGKYGLQSSTNISLDESVAIFLIIC 67

Query: 99  SHNENNRIAAERFQHSSHTISLAFNLILRKVCKL 133
           + N+  R  A RF H+  TI   F+ +L+ + +L
Sbjct: 68  ASNDTQRDIALRFGHAQETIWRKFHDVLKAMERL 101

The following BLAST results are available for this feature:

BLAST of IVF0002594 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0002594 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCZ7	4.1e-37	53.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G398940 PE=4 SV=1	[more]
A0A6A4KNZ4	9.4e-26	44.37	Myb_DNA-bind_3 domain-containing protein (Fragment) OS=Rhododendron williamsianu...	[more]
A0A1S3E695	5.5e-18	46.39	protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1-like OS=Cicer arietinum OX=...	[more]
A0A3Q7Y331	5.5e-18	46.39	protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1-like OS=Cicer arietinum OX=...	[more]
A0A0R0GE91	2.7e-17	50.55	DDE Tnp4 domain-containing protein OS=Glycine max OX=3847 GN=GLYMA_14G172000 PE=...	[more]

BLAST of IVF0002594 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF3433792.1	1.44e-37	46.91	hypothetical protein FNV43_RR24895 [Rhamnella rubrinervis]	[more]
KAF7148819.1	1.01e-34	40.44	hypothetical protein RHSIM_Rhsim03G0151700 [Rhododendron simsii]	[more]
KAF7123090.1	1.25e-34	40.66	hypothetical protein RHSIM_Rhsim12G0067000 [Rhododendron simsii]	[more]
KAE9445141.1	5.40e-32	44.37	hypothetical protein C3L33_22962, partial [Rhododendron williamsianum]	[more]
XP_020268890.1	4.90e-29	43.18	uncharacterized protein LOC109844313 [Asparagus officinalis]	[more]

BLAST of IVF0002594 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G28730.1	1.1e-07	31.91	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 32..132
None	No IPR available	PANTHER	PTHR22930:SF218	DUAL SPECIFICITY PHOSPHATASE DOMAIN PROTEIN	coord: 32..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0002594.2	IVF0002594.2	mRNA