IVF0002579 (gene) Melon (IVF77) v1

Overview


Name	IVF0002579
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	NAD(P)H dehydrogenase subunit 5
Location	tig00000662: 169815 .. 170754 (+)
RNA-Seq Expression	IVF0002579
Synteny	IVF0002579

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGTTATGCACTCTTCGAATAGGAATCCATTTTCTGAAAGATTCTGGCTTTCGTGCTTTGGTGGGTCTCCGAGATCCTTTCGATGACCTATGTTGTGTTGAAGGGATATCTATATGATCCGATTGATTGCGTAAAGCCCGCGGTAGCAACGGAACCGGGGAAAGTATACAGAAAAGACAGTTCTTTTCTATTCTATTAGTATTAGTATTAGATTAGTATTAGTTAGTGATCTCCGCTCAGTGAGTCCTTTCTTCCGTGATGAACTGTTGGCACCAGTCCTCCATTTTTTCTCTGTGGATCGAGGAGAAAGGGGGCTCGGTGGGAAGAGGATTGTAACATGAGAGAAGCAAGGAGGTCAACCTCTTTCAAATATACAACATGGATTCTGGCAATGCAATGTAGTTGGACTCTCATGTCGATCCGAATGAATCATCCTTTCCACGGAGGTAAATCTTTGCCTGCTAGGCAAGAGGATAGCAAGTTACAAATTCTGTCGCGGTAGGACATGTATTTCTATTACTATGAAATTCATAAATGAAGTAGTTAATGGTGGGGTTACCATTATCCTTTTTGCAATGACGAATCTTGTATGTGTTCCGAAGAAAAGTTGTTCATTTTTCGGGGTCTCGAAGGGGCGTGGAAACACATAAAAACTCTGGAATGGAAATGGAAAAGAGATCTAACTCCAGTTCCTTCGGAAATGGTAAGATCTTTGGCACAAGAAGAAGGGGTTGATCCATATCATCTTGACTGGGTTCTGATTTCTCTATTTTTTTAATAATACCGAGTTGGGTTCTTTTCCTACCCGTATCGAATAGAACATGCTGAGCCAAATCTTCTTCATGTAAAACCTGCTTTATTTAGATCGGGAAAATCGTACGGTTTTATGAAACCGTGTGCTATGGCTCGAATCCGTAGTCAATCCTATTTACGATAG

mRNA sequence

ATGCGGTTATGCACTCTTCGAATAGGAATCCATTTTCTGAAAGATTCTGGCTTTCGTGCTTTGGGATATCTATATGATCCGATTGATTGCGTAAAGCCCGCGGTAGCAACGGAACCGGGGAAATCCTCCATTTTTTCTCTGTGGATCGAGGAGAAAGGGGGCTCGGTGGGAAGAGGATTTTGGACTCTCATGTCGATCCGAATGAATCATCCTTTCCACGGAGGTAAATCTTTGCCTGCTAGGCAAGAGGATAGCAAGTTACAAATTCTGTCGCGAAAAGTTGTTCATTTTTCGGGGTCTCGAAGGGGCGTGGAAACACATAAAAACTCTGGAATGGAAATGGAAAAGAGATCTAACTCCAGTTCCTTCGGAAATGAACATGCTGAGCCAAATCTTCTTCATGTAAAACCTGCTTTATTTAGATCGGGAAAATCGTACGGTTTTATGAAACCGTGTGCTATGGCTCGAATCCGTAGTCAATCCTATTTACGATAG

Coding sequence (CDS)

ATGCGGTTATGCACTCTTCGAATAGGAATCCATTTTCTGAAAGATTCTGGCTTTCGTGCTTTGGGATATCTATATGATCCGATTGATTGCGTAAAGCCCGCGGTAGCAACGGAACCGGGGAAATCCTCCATTTTTTCTCTGTGGATCGAGGAGAAAGGGGGCTCGGTGGGAAGAGGATTTTGGACTCTCATGTCGATCCGAATGAATCATCCTTTCCACGGAGGTAAATCTTTGCCTGCTAGGCAAGAGGATAGCAAGTTACAAATTCTGTCGCGAAAAGTTGTTCATTTTTCGGGGTCTCGAAGGGGCGTGGAAACACATAAAAACTCTGGAATGGAAATGGAAAAGAGATCTAACTCCAGTTCCTTCGGAAATGAACATGCTGAGCCAAATCTTCTTCATGTAAAACCTGCTTTATTTAGATCGGGAAAATCGTACGGTTTTATGAAACCGTGTGCTATGGCTCGAATCCGTAGTCAATCCTATTTACGATAG

Protein sequence

MRLCTLRIGIHFLKDSGFRALGYLYDPIDCVKPAVATEPGKSSIFSLWIEEKGGSVGRGFWTLMSIRMNHPFHGGKSLPARQEDSKLQILSRKVVHFSGSRRGVETHKNSGMEMEKRSNSSSFGNEHAEPNLLHVKPALFRSGKSYGFMKPCAMARIRSQSYLR

Homology

[Close]

BLAST of IVF0002579 vs. ExPASy TrEMBL
Match: A0A0A0L231 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G628320 PE=4 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 1.5e-86
Identity = 158/160 (98.75%), Postives = 158/160 (98.75%), Query Frame = 0


Query: 1   MRLCTLRIGIHFLKDSGFRALGYLYDPIDCVKPAVATEPGKSSIFSLWIEEKGGSVGRGF 60
           MRLCTLRIGIHFLKDSGFRALGYLYDPIDCVKPAVATEPGKSSIFSLWIEEKGGS GRGF
Sbjct: 1   MRLCTLRIGIHFLKDSGFRALGYLYDPIDCVKPAVATEPGKSSIFSLWIEEKGGSAGRGF 60

Query: 61  WTLMSIRMNHPFHGGKSLPARQEDSKLQILSRKVVHFSGSRRGVETHKNSGMEMEKRSNS 120
           WTLMSIRMNHPFHGGKSLPARQEDSKLQILSRKVVHFSGSRRGVETHKNSGMEMEKR NS
Sbjct: 61  WTLMSIRMNHPFHGGKSLPARQEDSKLQILSRKVVHFSGSRRGVETHKNSGMEMEKRCNS 120

Query: 121 SSFGNEHAEPNLLHVKPALFRSGKSYGFMKPCAMARIRSQ 161
           SSFGNEHAEPNLLHVKPALFRSGKSYGFMKPCAMARIRSQ
Sbjct: 121 SSFGNEHAEPNLLHVKPALFRSGKSYGFMKPCAMARIRSQ 160

[Close]

BLAST of IVF0002579 vs. ExPASy TrEMBL
Match: A0A2P5XUU9 (Uncharacterized protein ycf68 OS=Gossypium barbadense OX=3634 GN=GOBAR_AA13525 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.1e-15
Identity = 55/122 (45.08%), Postives = 63/122 (51.64%), Query Frame = 0


Query: 1   MRLCTLRIGIHFLKDSGFRALGYLYDPIDCVKPAVATEPGKSSI---------------- 60
           M LCTLRIGIHFLKD GFRALGYLYDPI CVK A+ TEPGKS I                
Sbjct: 1   MWLCTLRIGIHFLKDPGFRALGYLYDPIGCVKLAITTEPGKSYIPFCLCGPRRKAAQQEG 60

Query: 61  --------------FSLWIEEKGGSVGRGFWTLMSIRMNHPFHGGKSLPARQEDSKLQIL 93
                         ++ W+ E   S     W  M IRMNH FHG  +L    +  K +IL
Sbjct: 61  DCTMREARRSTSFKYTTWVLEMQRS-----WAFMRIRMNHLFHGVTNLVCVPKKRK-EIL 116

[Close]

BLAST of IVF0002579 vs. ExPASy TrEMBL
Match: A0A5N5IXQ9 (Uncharacterized protein ycf68 OS=Salix brachista OX=2182728 GN=DKX38_030151 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.6e-11
Identity = 41/60 (68.33%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 41 KSSIFSLWIEEKGGSVG--------RGFWTLMSIRMNHPFHGGKSLPARQEDSKLQILSR 93
          +S I SLW EEK  S          +  WTLMSIRMNHPFHGGKSLPARQEDSKLQILSR
Sbjct: 6  QSYILSLWTEEKSASFKYTTWILAIQWSWTLMSIRMNHPFHGGKSLPARQEDSKLQILSR 65

[Close]

BLAST of IVF0002579 vs. ExPASy TrEMBL
Match: W9R592 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000755 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.8e-11
Identity = 38/50 (76.00%), Postives = 41/50 (82.00%), Query Frame = 0


Query: 115 EKRSNSSSFGNEHAEPNLLHVKPALFRSGKSYGFMKPCAMARIRSQSYLR 165
           +K S+ +S      EPNLLHVKPALFRSGKSYGFMKPCAMARIRSQSY R
Sbjct: 104 KKASHQASNATSKPEPNLLHVKPALFRSGKSYGFMKPCAMARIRSQSYFR 153

[Close]

BLAST of IVF0002579 vs. ExPASy TrEMBL
Match: A0A6A5N1D4 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00043441 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.4e-07
Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 61 WTLMSIRMNHPFHGGKSLPARQEDSKLQILS 92
          WTLMSIR+NHPFHGGKSLPARQEDSK +ILS
Sbjct: 49 WTLMSIRINHPFHGGKSLPARQEDSKFEILS 79

[Close]

BLAST of IVF0002579 vs. NCBI nr
Match: PPS07120.1 (hypothetical protein GOBAR_AA13525 [Gossypium barbadense])

HSP 1 Score: 90.9 bits (224), Expect = 6.29e-18
Identity = 59/136 (43.38%), Postives = 68/136 (50.00%), Query Frame = 0


Query: 1   MRLCTLRIGIHFLKDSGFRALGYLYDPIDCVKPAVATEPGKSSI---------------- 60
           M LCTLRIGIHFLKD GFRALGYLYDPI CVK A+ TEPGKS I                
Sbjct: 1   MWLCTLRIGIHFLKDPGFRALGYLYDPIGCVKLAITTEPGKSYIPFCLCGPRRKAAQQEG 60

Query: 61  --------------FSLWIEEKGGSVGRGFWTLMSIRMNHPFHGGKSLPARQEDSKLQIL 106
                         ++ W+ E   S     W  M IRMNH FHG  +L    +  K +IL
Sbjct: 61  DCTMREARRSTSFKYTTWVLEMQRS-----WAFMRIRMNHLFHGVTNLVCVPKKRK-EIL 120

[Close]

BLAST of IVF0002579 vs. NCBI nr
Match: EXB56973.1 (hypothetical protein L484_000755 [Morus notabilis])

HSP 1 Score: 79.0 bits (193), Expect = 4.17e-15
Identity = 38/50 (76.00%), Postives = 41/50 (82.00%), Query Frame = 0


Query: 115 EKRSNSSSFGNEHAEPNLLHVKPALFRSGKSYGFMKPCAMARIRSQSYLR 164
           +K S+ +S      EPNLLHVKPALFRSGKSYGFMKPCAMARIRSQSY R
Sbjct: 104 KKASHQASNATSKPEPNLLHVKPALFRSGKSYGFMKPCAMARIRSQSYFR 153

[Close]

BLAST of IVF0002579 vs. NCBI nr
Match: KAB5511226.1 (hypothetical protein DKX38_030151 [Salix brachista])

HSP 1 Score: 78.6 bits (192), Expect = 2.10e-14
Identity = 41/60 (68.33%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 41 KSSIFSLWIEEKGGSVG--------RGFWTLMSIRMNHPFHGGKSLPARQEDSKLQILSR 92
          +S I SLW EEK  S          +  WTLMSIRMNHPFHGGKSLPARQEDSKLQILSR
Sbjct: 6  QSYILSLWTEEKSASFKYTTWILAIQWSWTLMSIRMNHPFHGGKSLPARQEDSKLQILSR 65

[Close]

BLAST of IVF0002579 vs. NCBI nr
Match: RYR42393.1 (hypothetical protein Ahy_A08g038866 [Arachis hypogaea])

HSP 1 Score: 65.1 bits (157), Expect = 8.51e-11
Identity = 29/31 (93.55%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 61 WTLMSIRMNHPFHGGKSLPARQEDSKLQILS 91
          WTLMSIR N+PFHGGKSLPARQEDSKLQILS
Sbjct: 23 WTLMSIRTNYPFHGGKSLPARQEDSKLQILS 53

[Close]

BLAST of IVF0002579 vs. NCBI nr
Match: RYQ84274.1 (hypothetical protein Ahy_B10g103410 [Arachis hypogaea] >RYQ97004.1 hypothetical protein Ahy_B08g092965 [Arachis hypogaea])

HSP 1 Score: 65.1 bits (157), Expect = 8.51e-11
Identity = 29/31 (93.55%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 61 WTLMSIRMNHPFHGGKSLPARQEDSKLQILS 91
          WTLMSIR N+PFHGGKSLPARQEDSKLQILS
Sbjct: 23 WTLMSIRTNYPFHGGKSLPARQEDSKLQILS 53

The following BLAST results are available for this feature:

BLAST of IVF0002579 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0002579 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L231	1.5e-86	98.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G628320 PE=4 SV=1	[more]
A0A2P5XUU9	3.1e-15	45.08	Uncharacterized protein ycf68 OS=Gossypium barbadense OX=3634 GN=GOBAR_AA13525 P...	[more]
A0A5N5IXQ9	1.6e-11	68.33	Uncharacterized protein ycf68 OS=Salix brachista OX=2182728 GN=DKX38_030151 PE=3...	[more]
W9R592	2.8e-11	76.00	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000755 PE=4 SV=1	[more]
A0A6A5N1D4	2.4e-07	90.32	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00043441 PE=4 SV=1	[more]

BLAST of IVF0002579 vs. NCBI nr


Match Name	E-value	Identity	Description
PPS07120.1	6.29e-18	43.38	hypothetical protein GOBAR_AA13525 [Gossypium barbadense]	[more]
EXB56973.1	4.17e-15	76.00	hypothetical protein L484_000755 [Morus notabilis]	[more]
KAB5511226.1	2.10e-14	68.33	hypothetical protein DKX38_030151 [Salix brachista]	[more]
RYR42393.1	8.51e-11	93.55	hypothetical protein Ahy_A08g038866 [Arachis hypogaea]	[more]
RYQ84274.1	8.51e-11	93.55	hypothetical protein Ahy_B10g103410 [Arachis hypogaea] >RYQ97004.1 hypothetical ...	[more]

BLAST of IVF0002579 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0002579.1	IVF0002579.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016020	membrane