IVF0002562 (gene) Melon (IVF77) v1

Overview


Name	IVF0002562
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Reverse transcriptase
Location	chr08: 26420477 .. 26420815 (-)
RNA-Seq Expression	IVF0002562
Synteny	IVF0002562

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCCGAGCGAGCTTAAAGATTTGGAGGTGCAATTACAAGAACTGGTTGACAAGGGATACATCAGGCCTAGTGTATCGCCTTGGGGAGCACCAATGCTATTTGTGAAAAGCATAGATGGTACTCTTAGATTATGTATTGATTATAGACAGTTAAACAAGGTTACAATATGTAACAAGTATCCTTTACCACACATCGATGACTTATTTGATCAGCTAAGAGGAACAACATTGTTCTCTAAGATTGACTTAAGATCAGGATACCACCAATTGAAGGTTAAAGAATCAGATATTCCTAAGACAACATTCAGAACGAGGTATGGGCACTATGAGTTCTGA

mRNA sequence

ATGGCTCCGAGCGAGCTTAAAGATTTGGAGGTGCAATTACAAGAACTGGTTGACAAGGGATACATCAGGCCTAGTGTATCGCCTTGGGGAGCACCAATGCTATTTGTGAAAAGCATAGATGGTACTCTTAGATTATGTATTGATTATAGACAGTTAAACAAGGTTACAATATGTAACAAGTATCCTTTACCACACATCGATGACTTATTTGATCAGCTAAGAGGAACAACATTGTTCTCTAAGATTGACTTAAGATCAGGATACCACCAATTGAAGGTTAAAGAATCAGATATTCCTAAGACAACATTCAGAACGAGGTATGGGCACTATGAGTTCTGA

Coding sequence (CDS)

ATGGCTCCGAGCGAGCTTAAAGATTTGGAGGTGCAATTACAAGAACTGGTTGACAAGGGATACATCAGGCCTAGTGTATCGCCTTGGGGAGCACCAATGCTATTTGTGAAAAGCATAGATGGTACTCTTAGATTATGTATTGATTATAGACAGTTAAACAAGGTTACAATATGTAACAAGTATCCTTTACCACACATCGATGACTTATTTGATCAGCTAAGAGGAACAACATTGTTCTCTAAGATTGACTTAAGATCAGGATACCACCAATTGAAGGTTAAAGAATCAGATATTCCTAAGACAACATTCAGAACGAGGTATGGGCACTATGAGTTCTGA

Protein sequence

MAPSELKDLEVQLQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPKTTFRTRYGHYEF

Homology

[Close]

BLAST of IVF0002562 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 104.8 bits (260), Expect = 6.6e-22
Identity = 46/100 (46.00%), Postives = 66/100 (66.00%), Query Frame = 0


Query: 13  LQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQ 72
           +Q+L+D  +I PS SP  +P++ V   DGT RLC+DYR LNK TI + +PLP ID+L  +
Sbjct: 616 VQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSR 675

Query: 73  LRGTTLFSKIDLRSGYHQLKVKESDIPKTTFRTRYGHYEF 113
           +    +F+ +DL SGYHQ+ ++  D  KT F T  G YE+
Sbjct: 676 IGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEY 715

[Close]

BLAST of IVF0002562 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 104.8 bits (260), Expect = 6.6e-22
Identity = 46/100 (46.00%), Postives = 66/100 (66.00%), Query Frame = 0


Query: 13  LQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNKYPLPHIDDLFDQ 72
           +Q+L+D  +I PS SP  +P++ V   DGT RLC+DYR LNK TI + +PLP ID+L  +
Sbjct: 642 VQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSR 701

Query: 73  LRGTTLFSKIDLRSGYHQLKVKESDIPKTTFRTRYGHYEF 113
           +    +F+ +DL SGYHQ+ ++  D  KT F T  G YE+
Sbjct: 702 IGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEY 741

[Close]

BLAST of IVF0002562 vs. ExPASy Swiss-Prot
Match: P31843 (RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.6e-20
Identity = 44/71 (61.97%), Postives = 56/71 (78.87%), Query Frame = 0


Query: 42  TLRLCIDYRQLNKVTICNKYPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPKT 101
           +LR+CIDYR L KVTI NKYP+P +DDLFD+L   T F+K+DLRSGY Q+++ + D PKT
Sbjct: 5   SLRMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKT 64

Query: 102 TFRTRYGHYEF 113
           T  TRYG +EF
Sbjct: 65  TCVTRYGSFEF 75

[Close]

BLAST of IVF0002562 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.4e-19
Identity = 45/110 (40.91%), Postives = 74/110 (67.27%), Query Frame = 0


Query: 8   DLEVQLQELVDKGYIRPSVSPWGAPMLFV-KSIDGT----LRLCIDYRQLNKVTICNKYP 67
           ++E Q+QE++++G IR S SP+ +P   V K  D +     R+ IDYR+LN++TI ++YP
Sbjct: 221 EVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYP 280

Query: 68  LPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPKTTFRTRYGHYEF 113
           +P++D++  +L     F+ IDL  G+HQ+++ E  I KT F T+ GHYE+
Sbjct: 281 IPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEY 330

[Close]

BLAST of IVF0002562 vs. ExPASy Swiss-Prot
Match: P10394 (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 4.0e-19
Identity = 46/115 (40.00%), Postives = 70/115 (60.87%), Query Frame = 0


Query: 4   SELKDLEVQLQELVDKGYIRPSVSPWGAPMLFV------KSIDGTLRLCIDYRQLNKVTI 63
           S++++++ Q+Q+L+    + PSVS + +P+L V       S     RL IDYRQ+NK  +
Sbjct: 325 SQVEEIQAQVQKLIKDKIVEPSVSQYNSPLLLVPKKSSPNSDKKKWRLVIDYRQINKKLL 384

Query: 64  CNKYPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPKTTFRTRYGHYEF 113
            +K+PLP IDD+ DQL     FS +DL SG+HQ+++ E     T+F T  G Y F
Sbjct: 385 ADKFPLPRIDDILDQLGRAKYFSCLDLMSGFHQIELDEGSRDITSFSTSNGSYRF 439

[Close]

BLAST of IVF0002562 vs. ExPASy TrEMBL
Match: A0A5A7VEM3 (Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00410 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 9.5e-56
Identity = 107/111 (96.40%), Postives = 108/111 (97.30%), Query Frame = 0


Query: 1   MAPSELKDLEVQLQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNK 60
           MAPSELK+LEVQLQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNK
Sbjct: 698 MAPSELKELEVQLQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNK 757

Query: 61  YPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPKTTFRTRYGHYE 112
           YPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPKTTFRTR  H E
Sbjct: 758 YPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPKTTFRTRESHEE 808

[Close]

BLAST of IVF0002562 vs. ExPASy TrEMBL
Match: A0A5D3E0X2 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1212G00480 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 9.5e-56
Identity = 107/111 (96.40%), Postives = 108/111 (97.30%), Query Frame = 0


Query: 1   MAPSELKDLEVQLQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNK 60
           MAPSELK+LEVQLQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNK
Sbjct: 588 MAPSELKELEVQLQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNK 647

Query: 61  YPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPKTTFRTRYGHYE 112
           YPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPKTTFRTR  H E
Sbjct: 648 YPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPKTTFRTRESHEE 698

[Close]

BLAST of IVF0002562 vs. ExPASy TrEMBL
Match: A0A5D3DHC6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold386G00380 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 5.8e-53
Identity = 101/112 (90.18%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 1   MAPSELKDLEVQLQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNK 60
           MAPSELK+L++QLQELVDKGYIRPSVSPWGAP+LFVK  DGTLRLCIDYRQLNKVTI NK
Sbjct: 417 MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK 476

Query: 61  YPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPKTTFRTRYGHYEF 113
           YPLPHIDDLFDQLRG TLFSKIDLRSGYHQLKV+ESDI KTTF+TRYGHYEF
Sbjct: 477 YPLPHIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAKTTFKTRYGHYEF 528

[Close]

BLAST of IVF0002562 vs. ExPASy TrEMBL
Match: A0A5A7V8M7 (Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold679G00210 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.2e-52
Identity = 101/112 (90.18%), Postives = 105/112 (93.75%), Query Frame = 0


Query: 1   MAPSELKDLEVQLQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNK 60
           M+PSELKDL++QLQELVDKGYIRPSVSPWGAPMLFVK  DGTLRLCIDYRQLNKVTI NK
Sbjct: 577 MSPSELKDLKMQLQELVDKGYIRPSVSPWGAPMLFVKKKDGTLRLCIDYRQLNKVTIRNK 636

Query: 61  YPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPKTTFRTRYGHYEF 113
           YPLP IDDLFDQLRG TLFSKIDLRSGYHQLKV+ESDI KT FRTRYGHYEF
Sbjct: 637 YPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEF 688

[Close]

BLAST of IVF0002562 vs. ExPASy TrEMBL
Match: A0A5A7SR31 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G001000 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.2e-52
Identity = 100/112 (89.29%), Postives = 106/112 (94.64%), Query Frame = 0


Query: 1   MAPSELKDLEVQLQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNK 60
           MAPSELK+L++QLQELVDKGYIRPSVSPWGAP+LFVK  DGTLRLCIDYRQLNKVTI NK
Sbjct: 417 MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK 476

Query: 61  YPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPKTTFRTRYGHYEF 113
           YPLPHIDDLFDQLRG  LFSKIDLRSGYHQLKV+ESDI KTTF+TRYGHYEF
Sbjct: 477 YPLPHIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTTFKTRYGHYEF 528

[Close]

BLAST of IVF0002562 vs. NCBI nr
Match: TYK29281.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 223 bits (567), Expect = 4.64e-66
Identity = 107/111 (96.40%), Postives = 108/111 (97.30%), Query Frame = 0


Query: 1   MAPSELKDLEVQLQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNK 60
           MAPSELK+LEVQLQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNK
Sbjct: 588 MAPSELKELEVQLQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNK 647

Query: 61  YPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPKTTFRTRYGHYE 111
           YPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPKTTFRTR  H E
Sbjct: 648 YPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPKTTFRTRESHEE 698

[Close]

BLAST of IVF0002562 vs. NCBI nr
Match: KAA0065537.1 (putative Retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 223 bits (567), Expect = 9.74e-66
Identity = 107/111 (96.40%), Postives = 108/111 (97.30%), Query Frame = 0


Query: 1   MAPSELKDLEVQLQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNK 60
           MAPSELK+LEVQLQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNK
Sbjct: 698 MAPSELKELEVQLQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNK 757

Query: 61  YPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPKTTFRTRYGHYE 111
           YPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPKTTFRTR  H E
Sbjct: 758 YPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPKTTFRTRESHEE 808

[Close]

BLAST of IVF0002562 vs. NCBI nr
Match: WP_217833159.1 (hypothetical protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 213 bits (541), Expect = 2.11e-65
Identity = 98/112 (87.50%), Postives = 106/112 (94.64%), Query Frame = 0


Query: 1   MAPSELKDLEVQLQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNK 60
           MAPSELK+L+VQLQELVDKGYIRPSVSPWGAP+LFVK  DGT+RLCIDYRQLNKVTICNK
Sbjct: 217 MAPSELKELKVQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTMRLCIDYRQLNKVTICNK 276

Query: 61  YPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPKTTFRTRYGHYEF 112
           YPLP IDDLFDQLRG ++FSKIDLRSGYHQLKV+E D+PKT FRTRYGHYEF
Sbjct: 277 YPLPRIDDLFDQLRGASVFSKIDLRSGYHQLKVREIDVPKTAFRTRYGHYEF 328

[Close]

BLAST of IVF0002562 vs. NCBI nr
Match: PKI41747.1 (hypothetical protein CRG98_037862 [Punica granatum])

HSP 1 Score: 202 bits (514), Expect = 7.06e-65
Identity = 91/112 (81.25%), Postives = 105/112 (93.75%), Query Frame = 0


Query: 1   MAPSELKDLEVQLQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNK 60
           MAPSELK+L++QLQEL++KG+IRPSVSPWGAP+LFVK  DG+LRLCIDYRQLN+VT+ NK
Sbjct: 1   MAPSELKELKIQLQELLEKGFIRPSVSPWGAPVLFVKKKDGSLRLCIDYRQLNRVTVRNK 60

Query: 61  YPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPKTTFRTRYGHYEF 112
           YPLP IDDLFDQLRG T+FSKIDLRSGYHQLK+K+SD+PKT F TRYGHYEF
Sbjct: 61  YPLPRIDDLFDQLRGATVFSKIDLRSGYHQLKIKDSDVPKTAFSTRYGHYEF 112

[Close]

BLAST of IVF0002562 vs. NCBI nr
Match: PPZ24847.1 (hypothetical protein C5P36_26655, partial [Escherichia coli])

HSP 1 Score: 199 bits (507), Expect = 1.43e-63
Identity = 90/112 (80.36%), Postives = 104/112 (92.86%), Query Frame = 0


Query: 1   MAPSELKDLEVQLQELVDKGYIRPSVSPWGAPMLFVKSIDGTLRLCIDYRQLNKVTICNK 60
           MAP+EL++L+ QLQEL+DKG+IRPSVSPWGAP+LFVK  DGTLRLCIDYRQLNKVT+ NK
Sbjct: 1   MAPTELRELKTQLQELLDKGFIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTVKNK 60

Query: 61  YPLPHIDDLFDQLRGTTLFSKIDLRSGYHQLKVKESDIPKTTFRTRYGHYEF 112
           YPLP IDDLFDQL+G  +FSKIDLRSGYHQL+VK++D+PKT FRTRYGHYEF
Sbjct: 61  YPLPRIDDLFDQLKGAGVFSKIDLRSGYHQLRVKDADVPKTAFRTRYGHYEF 112

The following BLAST results are available for this feature:

BLAST of IVF0002562 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	6.6e-22	46.00	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	6.6e-22	46.00	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P31843	1.6e-20	61.97	RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1	[more]
P20825	2.4e-19	40.91	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P10394	4.0e-19	40.00	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaste...	[more]

BLAST of IVF0002562 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VEM3	9.5e-56	96.40	Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A5D3E0X2	9.5e-56	96.40	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3DHC6	5.8e-53	90.18	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38...	[more]
A0A5A7V8M7	2.2e-52	90.18	Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A5A7SR31	2.2e-52	89.29	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of IVF0002562 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK29281.1	4.64e-66	96.40	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0065537.1	9.74e-66	96.40	putative Retrotransposon protein [Cucumis melo var. makuwa]	[more]
WP_217833159.1	2.11e-65	87.50	hypothetical protein, partial [Synechococcus sp. PCC 7002]	[more]
PKI41747.1	7.06e-65	81.25	hypothetical protein CRG98_037862 [Punica granatum]	[more]
PPZ24847.1	1.43e-63	80.36	hypothetical protein C5P36_26655, partial [Escherichia coli]	[more]

BLAST of IVF0002562 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 61..88 e-value: 9.5E-45 score: 154.5
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..112 e-value: 9.5E-45 score: 154.5
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 9..111
None	No IPR available	PANTHER	PTHR24559:SF319	SUBFAMILY NOT NAMED	coord: 9..111
None	No IPR available	CDD	cd01647	RT_LTR	coord: 20..112 e-value: 9.37929E-47 score: 146.201
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0002562.2	IVF0002562.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0000786	nucleosome
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity