IVF0002548 (gene) Melon (IVF77) v1

Overview
NameIVF0002548
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr04: 5840778 .. 5840963 (-)
RNA-Seq ExpressionIVF0002548
SyntenyIVF0002548
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCCAGGATGATGTACGCGCTTCACACCCTGCTCGCGCATCGAAGGGTCGGCCTGGATCTAATGGATCAAAGCGATGGAGGGGAGGGCAGCGGGTGGGTGCAATTAAGATTACTCATCAGGCACTGGAGTGTGCAAATAACCAGCTGAGGTTAATTGCAGAGTGGCCTTCGCACGCACTATAA

mRNA sequence

ATGTCCCAGGATGATGTACGCGCTTCACACCCTGCTCGCGCATCGAAGGGTCGGCCTGGATCTAATGGATCAAAGCGATGGAGGGGAGGGCAGCGGGTGGGTGCAATTAAGATTACTCATCAGGCACTGGAGTGTGCAAATAACCAGCTGAGGTTAATTGCAGAGTGGCCTTCGCACGCACTATAA

Coding sequence (CDS)

ATGTCCCAGGATGATGTACGCGCTTCACACCCTGCTCGCGCATCGAAGGGTCGGCCTGGATCTAATGGATCAAAGCGATGGAGGGGAGGGCAGCGGGTGGGTGCAATTAAGATTACTCATCAGGCACTGGAGTGTGCAAATAACCAGCTGAGGTTAATTGCAGAGTGGCCTTCGCACGCACTATAA

Protein sequence

MSQDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHAL
Homology
BLAST of IVF0002548 vs. ExPASy TrEMBL
Match: A0A5D3DS68 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G00180 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.4e-13
Identity = 42/61 (68.85%), Postives = 49/61 (80.33%), Query Frame = 0

Query: 1   MSQDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHA 60
           MSQDDVRASHPA  S+ R GSNGSK+ R GQ VG I++ H+ALEC N+QLR+IAEWPS  
Sbjct: 157 MSQDDVRASHPACTSECRTGSNGSKQRREGQWVGEIEMIHEALECENDQLRMIAEWPSRT 216

Query: 61  L 62
           L
Sbjct: 217 L 217

BLAST of IVF0002548 vs. ExPASy TrEMBL
Match: A0A5A7U4I8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G001180 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 6.6e-11
Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 0

Query: 1   MSQDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHA 60
           MSQ+DVRAS P+  SKGR  S+GSKR R  Q+ G I++ H A+EC N+QLR IAEWP+ A
Sbjct: 96  MSQEDVRASRPSHTSKGRIRSSGSKRKRESQQKGEIEVIHMAIECTNDQLRTIAEWPARA 155

Query: 61  L 62
           L
Sbjct: 156 L 156

BLAST of IVF0002548 vs. ExPASy TrEMBL
Match: A0A5D3BD15 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G001730 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.5e-10
Identity = 34/61 (55.74%), Postives = 48/61 (78.69%), Query Frame = 0

Query: 1   MSQDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHA 60
           MSQ+DVRAS P+RA +GR GS+GSKR RG Q+   +++ + A EC N+QL+++AEWP+ A
Sbjct: 120 MSQEDVRASQPSRAFEGRVGSSGSKRKRGSQQEAELEVIYMARECTNDQLKIVAEWPARA 179

Query: 61  L 62
           L
Sbjct: 180 L 180

BLAST of IVF0002548 vs. ExPASy TrEMBL
Match: A0A5A7SNB3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G005110 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.5e-10
Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = 0

Query: 1   MSQDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHA 60
           +SQDDVRAS P+ AS+GR GS+GSKR RG QR   ++  H AL+ AN QLR+IAEWP+HA
Sbjct: 79  LSQDDVRASRPSCASEGRIGSSGSKRKRGSQRDLDVEGIHLALDQANEQLRMIAEWPAHA 138

Query: 61  L 62
           L
Sbjct: 139 L 139

BLAST of IVF0002548 vs. ExPASy TrEMBL
Match: A0A5A7TGP1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G00540 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.5e-10
Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = 0

Query: 1   MSQDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHA 60
           +SQDDVRAS P+RAS+GR GS+GSKR RG QR   ++  H AL+  N QLR IAEWP+H 
Sbjct: 183 LSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPAHN 242

Query: 61  L 62
           L
Sbjct: 243 L 243

BLAST of IVF0002548 vs. NCBI nr
Match: KAA0067019.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK26255.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 8.81e-18
Identity = 42/61 (68.85%), Postives = 49/61 (80.33%), Query Frame = 0

Query: 1   MSQDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHA 60
           MSQDDVRASHPA  S+ R GSNGSK+ R GQ VG I++ H+ALEC N+QLR+IAEWPS  
Sbjct: 157 MSQDDVRASHPACTSECRTGSNGSKQRREGQWVGEIEMIHEALECENDQLRMIAEWPSRT 216

BLAST of IVF0002548 vs. NCBI nr
Match: KAA0052252.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK01817.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 4.53e-15
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 0

Query: 1  MSQDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHA 60
          MS+DDVRAS PARAS GR GS+ SKR R  Q  G +++ H ALEC N+QLR I +WP+ A
Sbjct: 1  MSKDDVRASRPARASNGRAGSSKSKRKRRSQWDGELEVIHMALECMNDQLRTIVKWPARA 60

BLAST of IVF0002548 vs. NCBI nr
Match: KAA0050190.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ98219.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 9.42e-15
Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 0

Query: 1   MSQDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHA 60
           MSQ+DVRAS P+  SKGR  S+GSKR R  Q+ G I++ H A+EC N+QLR IAEWP+ A
Sbjct: 96  MSQEDVRASRPSHTSKGRIRSSGSKRKRESQQKGEIEVIHMAIECTNDQLRTIAEWPARA 155

BLAST of IVF0002548 vs. NCBI nr
Match: KAA0031723.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 1.78e-14
Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = 0

Query: 1   MSQDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHA 60
           +SQDDVRAS P+ AS+GR GS+GSKR RG QR   ++  H AL+ AN QLR+IAEWP+HA
Sbjct: 79  LSQDDVRASRPSCASEGRIGSSGSKRKRGSQRDLDVEGIHLALDQANEQLRMIAEWPAHA 138

BLAST of IVF0002548 vs. NCBI nr
Match: KAA0065782.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96521.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 3.75e-14
Identity = 34/61 (55.74%), Postives = 48/61 (78.69%), Query Frame = 0

Query: 1   MSQDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHA 60
           MSQ+DVRAS P+RA +GR GS+GSKR RG Q+   +++ + A EC N+QL+++AEWP+ A
Sbjct: 120 MSQEDVRASQPSRAFEGRVGSSGSKRKRGSQQEAELEVIYMARECTNDQLKIVAEWPARA 179

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DS682.4e-1368.85Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U4I86.6e-1160.66Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BD151.5e-1055.74Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SNB31.5e-1063.93Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TGP11.5e-1062.30Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0067019.18.81e-1868.85retrotransposon protein [Cucumis melo var. makuwa] >TYK26255.1 retrotransposon p... [more]
KAA0052252.14.53e-1560.66retrotransposon protein [Cucumis melo var. makuwa] >TYK01817.1 retrotransposon p... [more]
KAA0050190.19.42e-1560.66retrotransposon protein [Cucumis melo var. makuwa] >TYJ98219.1 retrotransposon p... [more]
KAA0031723.11.78e-1463.93retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0065782.13.75e-1455.74retrotransposon protein [Cucumis melo var. makuwa] >TYJ96521.1 retrotransposon p... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..33

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0002548.1IVF0002548.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding