IVF0002533 (gene) Melon (IVF77) v1

Overview


Name	IVF0002533
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Protein ROOT HAIR DEFECTIVE 3
Location	chr05: 8710315 .. 8710796 (-)
RNA-Seq Expression	IVF0002533
Synteny	IVF0002533

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACTTTCTAAGTCGCAAACAACTAAAGGTATATGGTTGGCTAGATGCGCCGGCATCGAGCCTTGTACACTTGTGATGGATTTGGAAGGAACTGATGGAAGAGAGCGAGGAGAGGTGCATTTCTATGCCCTTTTTGGTTTTCATGTGTTTCTTTTGTTTGTACTTTCGTTTATTTTTGCCTTTTTTATTATTTATTATTTTTTATATTTTCACAAATGTGTTTGTCAATGTTTTGAATTCAGTATATCATTGCATGCTTCTTTTTCCAAATACACATGTGTATGTATGTCTGTATGTGTGTGTATGTAAGGATGTGTGTGTATGTTTATGTATGTATTTATGCAAACATACTTATTTTTTTTATCATATCAAGCTAAGATGTATACTTTGGTTGTTTCTTAATTTGCTTTTGTCACATTCTTTTTAAGGACGACACTGCATTTGAGAAGCAAAGTGCCCTCTTTGCGCTTGGTGTGTAA

mRNA sequence

ATGTCACTTTCTAAGTCGCAAACAACTAAAGGTATATGGTTGGCTAGATGCGCCGGCATCGAGCCTTGTACACTTGTGATGGATTTGGAAGGAACTGATGGAAGAGAGCGAGGAGAGGACGACACTGCATTTGAGAAGCAAAGTGCCCTCTTTGCGCTTGGTGTGTAA

Coding sequence (CDS)

ATGTCACTTTCTAAGTCGCAAACAACTAAAGGTATATGGTTGGCTAGATGCGCCGGCATCGAGCCTTGTACACTTGTGATGGATTTGGAAGGAACTGATGGAAGAGAGCGAGGAGAGGACGACACTGCATTTGAGAAGCAAAGTGCCCTCTTTGCGCTTGGTGTGTAA

Protein sequence

MSLSKSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALGV

Homology

[Close]

BLAST of IVF0002533 vs. ExPASy Swiss-Prot
Match: Q9SSN0 (Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At1g72960 PE=2 SV=2)

HSP 1 Score: 105.5 bits (262), Expect = 1.9e-22
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 5   KSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALGV 56
           +SQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFAL +
Sbjct: 76  RSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAI 126

[Close]

BLAST of IVF0002533 vs. ExPASy Swiss-Prot
Match: P93042 (Protein ROOT HAIR DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RHD3 PE=1 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 5.6e-22
Identity = 47/51 (92.16%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 5   KSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALGV 56
           +SQTTKGIW+ARCAGIEPCT+VMDLEGTDGRERGEDDTAFEKQSALFAL V
Sbjct: 71  RSQTTKGIWIARCAGIEPCTVVMDLEGTDGRERGEDDTAFEKQSALFALAV 121

[Close]

BLAST of IVF0002533 vs. ExPASy Swiss-Prot
Match: Q2QMH2 (Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0604600 PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 6.2e-21
Identity = 43/51 (84.31%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 5   KSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALGV 56
           +SQTTKGIW+ARC G+EPCT+VMDLEGTDGRERGEDDTAFEKQS+LFAL +
Sbjct: 74  RSQTTKGIWIARCVGVEPCTVVMDLEGTDGRERGEDDTAFEKQSSLFALAI 124

[Close]

BLAST of IVF0002533 vs. ExPASy Swiss-Prot
Match: Q0JLS6 (Protein ROOT HAIR DEFECTIVE 3 OS=Oryza sativa subsp. japonica OX=39947 GN=RHD3 PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.5e-19
Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 5   KSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALGV 56
           +SQTTKGIW+A+   IEPCTLVMDLEGTDGRERGEDDTAFEKQSALFAL V
Sbjct: 71  RSQTTKGIWMAKAHNIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAV 121

[Close]

BLAST of IVF0002533 vs. ExPASy Swiss-Prot
Match: Q9FKE9 (Protein ROOT HAIR DEFECTIVE 3 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At5g45160 PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.4e-19
Identity = 42/51 (82.35%), Postives = 46/51 (90.20%), Query Frame = 0


Query: 5   KSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALGV 56
           +SQTTKGIW+ARC GIEP T+ MDLEGTDGRERGEDDT FEKQSALFA+ V
Sbjct: 74  RSQTTKGIWMARCVGIEPFTIAMDLEGTDGRERGEDDTTFEKQSALFAIAV 124

[Close]

BLAST of IVF0002533 vs. ExPASy TrEMBL
Match: A0A6J1KMA1 (Protein ROOT HAIR DEFECTIVE 3 homolog OS=Cucurbita maxima OX=3661 GN=LOC111494586 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.1e-20
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 3   LSKSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALGV 56
           + +SQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFAL V
Sbjct: 72  IGRSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAV 124

[Close]

BLAST of IVF0002533 vs. ExPASy TrEMBL
Match: A0A6J1KDB3 (Protein ROOT HAIR DEFECTIVE 3 homolog OS=Cucurbita maxima OX=3661 GN=LOC111494586 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.1e-20
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 3   LSKSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALGV 56
           + +SQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFAL V
Sbjct: 73  IGRSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAV 125

[Close]

BLAST of IVF0002533 vs. ExPASy TrEMBL
Match: A0A218WX77 (GB1/RHD3-type G domain-containing protein OS=Punica granatum OX=22663 GN=CDL15_Pgr013210 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.1e-20
Identity = 50/55 (90.91%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1   MSLSKSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALGV 56
           +S  +SQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFAL V
Sbjct: 52  ISSRRSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAV 106

[Close]

BLAST of IVF0002533 vs. ExPASy TrEMBL
Match: A0A6J1HJ25 (Protein ROOT HAIR DEFECTIVE 3 homolog OS=Cucurbita moschata OX=3662 GN=LOC111464506 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.1e-20
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 3   LSKSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALGV 56
           + +SQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFAL V
Sbjct: 72  IGRSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAV 124

[Close]

BLAST of IVF0002533 vs. ExPASy TrEMBL
Match: A0A6J1HND9 (Protein ROOT HAIR DEFECTIVE 3 homolog OS=Cucurbita moschata OX=3662 GN=LOC111464506 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.1e-20
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 3   LSKSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALGV 56
           + +SQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFAL V
Sbjct: 73  IGRSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAV 125

[Close]

BLAST of IVF0002533 vs. NCBI nr
Match: KAF2301062.1 (hypothetical protein GH714_019756 [Hevea brasiliensis])

HSP 1 Score: 105 bits (263), Expect = 2.40e-27
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 5   KSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALGV 55
           +SQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFAL V
Sbjct: 100 RSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAV 150

[Close]

BLAST of IVF0002533 vs. NCBI nr
Match: KAG2321814.1 (hypothetical protein Bca52824_015027 [Brassica carinata])

HSP 1 Score: 105 bits (262), Expect = 1.36e-26
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 5   KSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALGV 55
           +SQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFAL +
Sbjct: 84  RSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAI 134

[Close]

BLAST of IVF0002533 vs. NCBI nr
Match: MCH81464.1 (ROOT HAIR defective 3 GTP-binding family protein [Trifolium medium])

HSP 1 Score: 104 bits (259), Expect = 1.48e-26
Identity = 47/51 (92.16%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 5   KSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALGV 55
           +SQTTKGIW+ARCAGIEPCT+VMDLEGTDGRERGEDDTAFEKQSALFAL V
Sbjct: 92  RSQTTKGIWMARCAGIEPCTIVMDLEGTDGRERGEDDTAFEKQSALFALAV 142

[Close]

BLAST of IVF0002533 vs. NCBI nr
Match: KAF5929889.1 (hypothetical protein HYC85_000056, partial [Camellia sinensis])

HSP 1 Score: 104 bits (260), Expect = 4.74e-26
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 5   KSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALGV 55
           KSQTTKGIWLA+C+GIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFAL V
Sbjct: 66  KSQTTKGIWLAKCSGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAV 116

[Close]

BLAST of IVF0002533 vs. NCBI nr
Match: KAG5537881.1 (hypothetical protein RHGRI_025094 [Rhododendron griersonianum])

HSP 1 Score: 108 bits (270), Expect = 6.11e-26
Identity = 50/55 (90.91%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 1   MSLSKSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALGV 55
           +SLS+SQTTKGIW+A CAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFAL V
Sbjct: 76  LSLSRSQTTKGIWMAHCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAV 130

[Close]

BLAST of IVF0002533 vs. TAIR 10
Match: AT1G72960.1 (Root hair defective 3 GTP-binding protein (RHD3) )

HSP 1 Score: 105.5 bits (262), Expect = 1.4e-23
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 5   KSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALGV 56
           +SQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFAL +
Sbjct: 76  RSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAI 126

[Close]

BLAST of IVF0002533 vs. TAIR 10
Match: AT3G13870.1 (Root hair defective 3 GTP-binding protein (RHD3) )

HSP 1 Score: 104.0 bits (258), Expect = 4.0e-23
Identity = 47/51 (92.16%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 5   KSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALGV 56
           +SQTTKGIW+ARCAGIEPCT+VMDLEGTDGRERGEDDTAFEKQSALFAL V
Sbjct: 71  RSQTTKGIWIARCAGIEPCTVVMDLEGTDGRERGEDDTAFEKQSALFALAV 121

[Close]

BLAST of IVF0002533 vs. TAIR 10
Match: AT3G13870.2 (Root hair defective 3 GTP-binding protein (RHD3) )

HSP 1 Score: 102.8 bits (255), Expect = 8.8e-23
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = 0


Query: 6  SQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALGV 56
          SQTTKGIW+ARCAGIEPCT+VMDLEGTDGRERGEDDTAFEKQSALFAL V
Sbjct: 8  SQTTKGIWIARCAGIEPCTVVMDLEGTDGRERGEDDTAFEKQSALFALAV 57

[Close]

BLAST of IVF0002533 vs. TAIR 10
Match: AT5G45160.1 (Root hair defective 3 GTP-binding protein (RHD3) )

HSP 1 Score: 94.7 bits (234), Expect = 2.4e-20
Identity = 42/51 (82.35%), Postives = 46/51 (90.20%), Query Frame = 0


Query: 5   KSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALGV 56
           +SQTTKGIW+ARC GIEP T+ MDLEGTDGRERGEDDT FEKQSALFA+ V
Sbjct: 74  RSQTTKGIWMARCVGIEPFTIAMDLEGTDGRERGEDDTTFEKQSALFAIAV 124

The following BLAST results are available for this feature:

BLAST of IVF0002533 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SSN0	1.9e-22	94.12	Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At1g7...	[more]
P93042	5.6e-22	92.16	Protein ROOT HAIR DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RHD3 PE=1 SV=1	[more]
Q2QMH2	6.2e-21	84.31	Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Oryza sativa subsp. japonica OX=39947...	[more]
Q0JLS6	1.5e-19	86.27	Protein ROOT HAIR DEFECTIVE 3 OS=Oryza sativa subsp. japonica OX=39947 GN=RHD3 P...	[more]
Q9FKE9	3.4e-19	82.35	Protein ROOT HAIR DEFECTIVE 3 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At5g4...	[more]

BLAST of IVF0002533 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KMA1	4.1e-20	92.45	Protein ROOT HAIR DEFECTIVE 3 homolog OS=Cucurbita maxima OX=3661 GN=LOC11149458...	[more]
A0A6J1KDB3	4.1e-20	92.45	Protein ROOT HAIR DEFECTIVE 3 homolog OS=Cucurbita maxima OX=3661 GN=LOC11149458...	[more]
A0A218WX77	4.1e-20	90.91	GB1/RHD3-type G domain-containing protein OS=Punica granatum OX=22663 GN=CDL15_P...	[more]
A0A6J1HJ25	4.1e-20	92.45	Protein ROOT HAIR DEFECTIVE 3 homolog OS=Cucurbita moschata OX=3662 GN=LOC111464...	[more]
A0A6J1HND9	4.1e-20	92.45	Protein ROOT HAIR DEFECTIVE 3 homolog OS=Cucurbita moschata OX=3662 GN=LOC111464...	[more]

BLAST of IVF0002533 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF2301062.1	2.40e-27	96.08	hypothetical protein GH714_019756 [Hevea brasiliensis]	[more]
KAG2321814.1	1.36e-26	94.12	hypothetical protein Bca52824_015027 [Brassica carinata]	[more]
MCH81464.1	1.48e-26	92.16	ROOT HAIR defective 3 GTP-binding family protein [Trifolium medium]	[more]
KAF5929889.1	4.74e-26	94.12	hypothetical protein HYC85_000056, partial [Camellia sinensis]	[more]
KAG5537881.1	6.11e-26	90.91	hypothetical protein RHGRI_025094 [Rhododendron griersonianum]	[more]

BLAST of IVF0002533 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G72960.1	1.4e-23	94.12	Root hair defective 3 GTP-binding protein (RHD3)	[more]
AT3G13870.1	4.0e-23	92.16	Root hair defective 3 GTP-binding protein (RHD3)	[more]
AT3G13870.2	8.8e-23	94.00	Root hair defective 3 GTP-binding protein (RHD3)	[more]
AT5G45160.1	2.4e-20	82.35	Root hair defective 3 GTP-binding protein (RHD3)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 1..55 e-value: 1.7E-5 score: 26.1
IPR008803	RHD3/Sey1	PFAM	PF05879	RHD3	coord: 5..55 e-value: 1.7E-27 score: 96.0
IPR008803	RHD3/Sey1	PANTHER	PTHR45923	PROTEIN SEY1	coord: 5..54
None	No IPR available	PANTHER	PTHR45923:SF15	PROTEIN ROOT HAIR DEFECTIVE 3 HOMOLOG	coord: 5..54
IPR030386	GB1/RHD3-type guanine nucleotide-binding (G) domain	PROSITE	PS51715	G_GB1_RHD3	coord: 1..55 score: 21.55645

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0002533.2	IVF0002533.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:0009536	plastid
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding