IVF0002439 (gene) Melon (IVF77) v1

Overview


Name	IVF0002439
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr01: 12380170 .. 12380498 (-)
RNA-Seq Expression	IVF0002439
Synteny	IVF0002439

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACATCAGCAATAACAAAGTTACCACTAGTACTCCTAGTCTGCATTGCCATTTTAGCATCATCCGAACAGCTCGTCCAAAAATAGTAGCAGCAGCAACACCCACGTCGAAGGATTTCTCTTTGTTCCCCTGCATATCATTCATTCCTAAGGCAACAAAATGTGTGATTGATGTGCTTAAAAATGCAGTCGCTCCTCATCCTTCATGTTGTGAAGCCATCTCTCAACTTCATGATTGTTCGTCCCAGTTTCTCAAAGACATTCCCTCTGGTGATATGATTTTGGTTAAGAGCATTTGTGCGTCATGGGGAGTTTCTATTTCTTAG

mRNA sequence

ATGGCAACATCAGCAATAACAAAGTTACCACTAGTACTCCTAGTCTGCATTGCCATTTTAGCATCATCCGAACAGCTCGATTTCTCTTTGTTCCCCTGCATATCATTCATTCCTAAGGCAACAAAATGTGTGATTGATGTGCTTAAAAATGCAGTCGCTCCTCATCCTTCATGTTGTGAAGCCATCTCTCAACTTCATGATTGTTCGTCCCAGTTTCTCAAAGACATTCCCTCTGGTGATATGATTTTGGTTAAGAGCATTTGTGCGTCATGGGGAGTTTCTATTTCTTAG

Coding sequence (CDS)

ATGGCAACATCAGCAATAACAAAGTTACCACTAGTACTCCTAGTCTGCATTGCCATTTTAGCATCATCCGAACAGCTCGATTTCTCTTTGTTCCCCTGCATATCATTCATTCCTAAGGCAACAAAATGTGTGATTGATGTGCTTAAAAATGCAGTCGCTCCTCATCCTTCATGTTGTGAAGCCATCTCTCAACTTCATGATTGTTCGTCCCAGTTTCTCAAAGACATTCCCTCTGGTGATATGATTTTGGTTAAGAGCATTTGTGCGTCATGGGGAGTTTCTATTTCTTAG

Protein sequence

MATSAITKLPLVLLVCIAILASSEQLDFSLFPCISFIPKATKCVIDVLKNAVAPHPSCCEAISQLHDCSSQFLKDIPSGDMILVKSICASWGVSIS

Homology

[Close]

BLAST of IVF0002439 vs. ExPASy TrEMBL
Match: A0A5D3CFS6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00210 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 5.3e-39
Identity = 91/109 (83.49%), Postives = 92/109 (84.40%), Query Frame = 0


Query: 1   MATSAITKLPLVLLVCIAILASS-------------EQLDFSLFPCISFIPKATKCVIDV 60
           MATSAITKLPLVLLVCIAILASS                DFSLFPCISF+PKATKCVIDV
Sbjct: 1   MATSAITKLPLVLLVCIAILASSVTARPTIVAAATPTSEDFSLFPCISFVPKATKCVIDV 60

Query: 61  LKNAVAPHPSCCEAISQLHDCSSQFLKDIPSGDMILVKSICASWGVSIS 97
           LKNAVAPHPSCCEAISQLHDCSSQFLKDIPS DMILVKSICASWGVSIS
Sbjct: 61  LKNAVAPHPSCCEAISQLHDCSSQFLKDIPSSDMILVKSICASWGVSIS 109

[Close]

BLAST of IVF0002439 vs. ExPASy TrEMBL
Match: A0A5A7U9B0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00630 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 3.5e-38
Identity = 89/109 (81.65%), Postives = 91/109 (83.49%), Query Frame = 0


Query: 1   MATSAITKLPLVLLVCIAILASS-------------EQLDFSLFPCISFIPKATKCVIDV 60
           MATSAITKLPLVL VCIAILASS                DFSLFPCISF+PKATKCVIDV
Sbjct: 1   MATSAITKLPLVLRVCIAILASSVTACPTIVAAATPTSEDFSLFPCISFVPKATKCVIDV 60

Query: 61  LKNAVAPHPSCCEAISQLHDCSSQFLKDIPSGDMILVKSICASWGVSIS 97
           LKN VAPHPSCCEAI+QLHDCSSQFLKDIPSGDMILVKSICASWGVSIS
Sbjct: 61  LKNVVAPHPSCCEAITQLHDCSSQFLKDIPSGDMILVKSICASWGVSIS 109

[Close]

BLAST of IVF0002439 vs. ExPASy TrEMBL
Match: A0A5A7U2D8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00440 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.1e-36
Identity = 88/109 (80.73%), Postives = 90/109 (82.57%), Query Frame = 0


Query: 1   MATSAITKLPLVLLVCIAILASSE-------------QLDFSLFPCISFIPKATKCVIDV 60
           MATSAITKLPL+LLVCIAILASS                DFSLFPCISF+P ATK VIDV
Sbjct: 1   MATSAITKLPLILLVCIAILASSVTARPTIVAAATPISKDFSLFPCISFVPMATKRVIDV 60

Query: 61  LKNAVAPHPSCCEAISQLHDCSSQFLKDIPSGDMILVKSICASWGVSIS 97
           LKNAVAPHPSCCEAISQLHDCSSQFLKDIPS DMILVKSICASWGVSIS
Sbjct: 61  LKNAVAPHPSCCEAISQLHDCSSQFLKDIPSDDMILVKSICASWGVSIS 109

[Close]

BLAST of IVF0002439 vs. ExPASy TrEMBL
Match: A0A5A7U8Y3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00460 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 3.1e-31
Identity = 76/105 (72.38%), Postives = 83/105 (79.05%), Query Frame = 0


Query: 4   SAITKLPLVLLVCIAILASS------------EQLDFSLFPCISFIPKATKCVIDVLKNA 63
           ++ TKLPL LL CI ILASS             + D SLFPC SF+PKAT+CVIDVLKNA
Sbjct: 3   ASFTKLPLALLFCIFILASSVMARPVTVAAAAPEGDISLFPCKSFVPKATECVIDVLKNA 62

Query: 64  VAPHPSCCEAISQLHDCSSQFLKDIPSGDMILVKSICASWGVSIS 97
           VAPHPSCC+AIS+LHDCSSQFLKDIPS DMILVKSICA WGVSIS
Sbjct: 63  VAPHPSCCQAISELHDCSSQFLKDIPSVDMILVKSICALWGVSIS 107

[Close]

BLAST of IVF0002439 vs. ExPASy TrEMBL
Match: A0A5D3CEQ4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00180 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 3.1e-31
Identity = 76/105 (72.38%), Postives = 82/105 (78.10%), Query Frame = 0


Query: 4   SAITKLPLVLLVCIAILASSEQL------------DFSLFPCISFIPKATKCVIDVLKNA 63
           ++ TKLPL LL CI ILASS               D SLFPC SF+PKAT+CVIDVLKNA
Sbjct: 3   ASFTKLPLALLFCIFILASSVMARPVTVAAAAPIGDISLFPCKSFVPKATECVIDVLKNA 62

Query: 64  VAPHPSCCEAISQLHDCSSQFLKDIPSGDMILVKSICASWGVSIS 97
           VAPHPSCC+AIS+LHDCSSQFLKDIPS DMILVKSICA WGVSIS
Sbjct: 63  VAPHPSCCQAISELHDCSSQFLKDIPSVDMILVKSICALWGVSIS 107

[Close]

BLAST of IVF0002439 vs. NCBI nr
Match: TYK10345.1 (hypothetical protein E5676_scaffold367G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 169 bits (428), Expect = 2.59e-52
Identity = 91/109 (83.49%), Postives = 92/109 (84.40%), Query Frame = 0


Query: 1   MATSAITKLPLVLLVCIAILASSEQL-------------DFSLFPCISFIPKATKCVIDV 60
           MATSAITKLPLVLLVCIAILASS                DFSLFPCISF+PKATKCVIDV
Sbjct: 1   MATSAITKLPLVLLVCIAILASSVTARPTIVAAATPTSEDFSLFPCISFVPKATKCVIDV 60

Query: 61  LKNAVAPHPSCCEAISQLHDCSSQFLKDIPSGDMILVKSICASWGVSIS 96
           LKNAVAPHPSCCEAISQLHDCSSQFLKDIPS DMILVKSICASWGVSIS
Sbjct: 61  LKNAVAPHPSCCEAISQLHDCSSQFLKDIPSSDMILVKSICASWGVSIS 109

[Close]

BLAST of IVF0002439 vs. NCBI nr
Match: KAA0050079.1 (hypothetical protein E6C27_scaffold675G00630 [Cucumis melo var. makuwa])

HSP 1 Score: 166 bits (421), Expect = 3.02e-51
Identity = 89/109 (81.65%), Postives = 91/109 (83.49%), Query Frame = 0


Query: 1   MATSAITKLPLVLLVCIAILASSEQL-------------DFSLFPCISFIPKATKCVIDV 60
           MATSAITKLPLVL VCIAILASS                DFSLFPCISF+PKATKCVIDV
Sbjct: 1   MATSAITKLPLVLRVCIAILASSVTACPTIVAAATPTSEDFSLFPCISFVPKATKCVIDV 60

Query: 61  LKNAVAPHPSCCEAISQLHDCSSQFLKDIPSGDMILVKSICASWGVSIS 96
           LKN VAPHPSCCEAI+QLHDCSSQFLKDIPSGDMILVKSICASWGVSIS
Sbjct: 61  LKNVVAPHPSCCEAITQLHDCSSQFLKDIPSGDMILVKSICASWGVSIS 109

[Close]

BLAST of IVF0002439 vs. NCBI nr
Match: KAA0050063.1 (hypothetical protein E6C27_scaffold675G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 161 bits (408), Expect = 2.90e-49
Identity = 88/109 (80.73%), Postives = 90/109 (82.57%), Query Frame = 0


Query: 1   MATSAITKLPLVLLVCIAILASSEQL-------------DFSLFPCISFIPKATKCVIDV 60
           MATSAITKLPL+LLVCIAILASS                DFSLFPCISF+P ATK VIDV
Sbjct: 1   MATSAITKLPLILLVCIAILASSVTARPTIVAAATPISKDFSLFPCISFVPMATKRVIDV 60

Query: 61  LKNAVAPHPSCCEAISQLHDCSSQFLKDIPSGDMILVKSICASWGVSIS 96
           LKNAVAPHPSCCEAISQLHDCSSQFLKDIPS DMILVKSICASWGVSIS
Sbjct: 61  LKNAVAPHPSCCEAISQLHDCSSQFLKDIPSDDMILVKSICASWGVSIS 109

[Close]

BLAST of IVF0002439 vs. NCBI nr
Match: KAA0050065.1 (hypothetical protein E6C27_scaffold675G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 143 bits (361), Expect = 3.98e-42
Identity = 76/102 (74.51%), Postives = 80/102 (78.43%), Query Frame = 0


Query: 7   TKLPLVLLVCIAILASSEQL------------DFSLFPCISFIPKATKCVIDVLKNAVAP 66
           TKLPL LL CI ILASS               D SLFPC SF+PKAT+CVIDVLKNAVAP
Sbjct: 6   TKLPLALLFCIFILASSVMARPVTVAAAAPEGDISLFPCKSFVPKATECVIDVLKNAVAP 65

Query: 67  HPSCCEAISQLHDCSSQFLKDIPSGDMILVKSICASWGVSIS 96
           HPSCC+AIS+LHDCSSQFLKDIPS DMILVKSICA WGVSIS
Sbjct: 66  HPSCCQAISELHDCSSQFLKDIPSVDMILVKSICALWGVSIS 107

[Close]

BLAST of IVF0002439 vs. NCBI nr
Match: TYK10343.1 (hypothetical protein E5676_scaffold367G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 143 bits (361), Expect = 3.98e-42
Identity = 76/102 (74.51%), Postives = 80/102 (78.43%), Query Frame = 0


Query: 7   TKLPLVLLVCIAILASSEQL------------DFSLFPCISFIPKATKCVIDVLKNAVAP 66
           TKLPL LL CI ILASS               D SLFPC SF+PKAT+CVIDVLKNAVAP
Sbjct: 6   TKLPLALLFCIFILASSVMARPVTVAAAAPIGDISLFPCKSFVPKATECVIDVLKNAVAP 65

Query: 67  HPSCCEAISQLHDCSSQFLKDIPSGDMILVKSICASWGVSIS 96
           HPSCC+AIS+LHDCSSQFLKDIPS DMILVKSICA WGVSIS
Sbjct: 66  HPSCCQAISELHDCSSQFLKDIPSVDMILVKSICALWGVSIS 107

The following BLAST results are available for this feature:

BLAST of IVF0002439 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0002439 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CFS6	5.3e-39	83.49	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U9B0	3.5e-38	81.65	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U2D8	1.1e-36	80.73	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U8Y3	3.1e-31	72.38	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CEQ4	3.1e-31	72.38	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0002439 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK10345.1	2.59e-52	83.49	hypothetical protein E5676_scaffold367G00210 [Cucumis melo var. makuwa]	[more]
KAA0050079.1	3.02e-51	81.65	hypothetical protein E6C27_scaffold675G00630 [Cucumis melo var. makuwa]	[more]
KAA0050063.1	2.90e-49	80.73	hypothetical protein E6C27_scaffold675G00440 [Cucumis melo var. makuwa]	[more]
KAA0050065.1	3.98e-42	74.51	hypothetical protein E6C27_scaffold675G00460 [Cucumis melo var. makuwa]	[more]
TYK10343.1	3.98e-42	74.51	hypothetical protein E5676_scaffold367G00180 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0002439 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0002439.1	IVF0002439.1	mRNA