IVF0002403 (gene) Melon (IVF77) v1

Overview


Name	IVF0002403
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Dynein light chain
Location	chr04: 31448944 .. 31449917 (+)
RNA-Seq Expression	IVF0002403
Synteny	IVF0002403

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGAGGGCAAAGCTGTGGTCCGCGAAACAGACATGCCACAGGGGATCCAGAGCCATGTCCTTGAGTTGGCTTATAAAGCACTTGATCAACACGAAGTTTCTGACTGTCAATCTATTGCACATTTCATCAAACAGGTTTATTTTCTTTTAACATTCAGAATCTTCTTTATGTAGTGGTTTAAATTTATATTTTATTAAATTAATTATATGCTCTTTTCCCCCTTCTTTTTTTTTTTTTTTTTTCCATAAAAGGAAGACATGTCCTTTCGTTGCAATAATAGTTTGAAAAGATTCATTTTTGTAACCTGTAAAAAGTTGTAGATACCCTTTTATGATATAAAGAAGATATGCCTCATCATTCACAGTAAACACATCAATAAACAAAGTTACCTTTTCCTTTTAAAATATTCGAGTGTGCCTCATTTTCAGATACTATAAATTTCTACTCACACAACACGTAGATGATCTATGTACACGTCATCCACTATCTGATCCGATGAGATTAAATCTGGAATATACTTTGTGTGGATGATTTTTGAATCGATTTGTCTGAAGAGTAAAGGGACATCGTTTTGAATGAAATGACTCAGGAAGTTCCCATGTTCATCATTTCTTCCTTTTTGCTGGTCTGTGAACAATCTCAGTATGATAATGAGAAAAAGTTGCTCGATATCAAATTACGAACTAACAAGTGGACCGACCCACGACACGTTAATGAAAGACTACCGAATACTATCTATATTAAATTGCATAGTTATACGACTTTGTGCTTTGATAATTAGAGGTTTGATGAAGCTTATGGCCCAGCATGGCATTGTGTGGCCGGCAAAGCGTTTGGAGGTTGCATTACACATCTATGTGGGAGTTTCATCTTCTTCCATGTGGATACGATGGAGTTTCTCGTCTTCAAGGACGGAAGAGACTGCTCCAAAAGTGTCGAAGAGACTGTTGGAGTTTGCCGGAAATATTAA

mRNA sequence

ATGTTGGAGGGCAAAGCTGTGGTCCGCGAAACAGACATGCCACAGGGGATCCAGAGCCATGTCCTTGAGTTGGCTTATAAAGCACTTGATCAACACGAAGTTTCTGACTGTCAATCTATTGCACATTTCATCAAACAGAGGTTTGATGAAGCTTATGGCCCAGCATGGCATTGTGTGGCCGGCAAAGCGTTTGGAGGTTGCATTACACATCTATGTGGGAGTTTCATCTTCTTCCATGTGGATACGATGGAGTTTCTCGTCTTCAAGGACGGAAGAGACTGCTCCAAAAGTGTCGAAGAGACTGTTGGAGTTTGCCGGAAATATTAA

Coding sequence (CDS)

ATGTTGGAGGGCAAAGCTGTGGTCCGCGAAACAGACATGCCACAGGGGATCCAGAGCCATGTCCTTGAGTTGGCTTATAAAGCACTTGATCAACACGAAGTTTCTGACTGTCAATCTATTGCACATTTCATCAAACAGAGGTTTGATGAAGCTTATGGCCCAGCATGGCATTGTGTGGCCGGCAAAGCGTTTGGAGGTTGCATTACACATCTATGTGGGAGTTTCATCTTCTTCCATGTGGATACGATGGAGTTTCTCGTCTTCAAGGACGGAAGAGACTGCTCCAAAAGTGTCGAAGAGACTGTTGGAGTTTGCCGGAAATATTAA

Protein sequence

MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVAGKAFGGCITHLCGSFIFFHVDTMEFLVFKDGRDCSKSVEETVGVCRKY

Homology

[Close]

BLAST of IVF0002403 vs. ExPASy Swiss-Prot
Match: Q94758 (Dynein light chain OS=Schistosoma mansoni OX=6183 GN=DLC PE=1 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 4.4e-15
Identity = 37/91 (40.66%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 1  MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60
          M E KAV++  DM + +Q   + +A  A+D+H++   + IA  IK+ FD  Y P WHC+ 
Sbjct: 1  MSERKAVIKNADMSEEMQEDAIHIAAGAIDKHDLE--KDIAANIKKDFDRKYHPTWHCIV 60

Query: 61 GKAFGGCITHLCGSFIFFHVDTMEFLVFKDG 92
          G+ FG  +TH   +FI+F++D   FL+FK G
Sbjct: 61 GRHFGSYVTHETHNFIYFYLDDRAFLLFKSG 89

[Close]

BLAST of IVF0002403 vs. ExPASy Swiss-Prot
Match: Q94748 (Probable dynein light chain OS=Schistosoma mansoni OX=6183 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 9.9e-15
Identity = 37/91 (40.66%), Postives = 55/91 (60.44%), Query Frame = 0


Query: 1  MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60
          M E KAV++  DM + +Q   +  A  ALD++E+   + +A +IK+ FD  Y P WHC+ 
Sbjct: 1  MGERKAVIKNADMHEDMQETAVHTAAAALDKYEIE--KDVAAYIKKEFDRKYNPNWHCIV 60

Query: 61 GKAFGGCITHLCGSFIFFHVDTMEFLVFKDG 92
          GK FG  +TH    FI+F++    FL+FK G
Sbjct: 61 GKHFGSYVTHETQHFIYFYLQERAFLLFKSG 89

[Close]

BLAST of IVF0002403 vs. ExPASy Swiss-Prot
Match: O02414 (Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=1043166 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-14
Identity = 35/91 (38.46%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 1  MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60
          M E KAV++  DMP+ +Q   ++ A +AL++  +   + IA +IK+ FD+ Y P WHC+ 
Sbjct: 1  MSERKAVIKNADMPEDMQQDAVDCATQALEKFNIE--KDIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GKAFGGCITHLCGSFIFFHVDTMEFLVFKDG 92
          G+ FG  +TH    FI+F++  +  L+FK G
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 89

[Close]

BLAST of IVF0002403 vs. ExPASy Swiss-Prot
Match: Q22799 (Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.9e-14
Identity = 33/91 (36.26%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 1  MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60
          M++ KAV++  DM   +Q   ++ A +AL+++ +   + IA +IK+ FD+ Y P WHC+ 
Sbjct: 1  MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GKAFGGCITHLCGSFIFFHVDTMEFLVFKDG 92
          G+ FG  +TH    FI+F++  +  L+FK G
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of IVF0002403 vs. ExPASy Swiss-Prot
Match: O96860 (Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=Cdlc2 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.9e-14
Identity = 34/91 (37.36%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 1  MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60
          M + KAV++  DM + +Q   ++ A +AL+++ +   + IA FIK+ FD+ Y P WHC+ 
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIE--KDIAAFIKKEFDKKYNPTWHCIV 60

Query: 61 GKAFGGCITHLCGSFIFFHVDTMEFLVFKDG 92
          G+ FG  +TH    FI+F++  +  L+FK G
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of IVF0002403 vs. ExPASy TrEMBL
Match: A0A1S3B5U2 (Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103486353 PE=3 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 9.8e-58
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60
           MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA
Sbjct: 1   MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60

Query: 61  GKAFGGCITHLCGSFIFFHVDTMEFLVFKDGRDCSKSVEETVGVCRKY 109
           GKAFGGCITHLCGSFIFFHVDTMEFLVFKDGRDCSKSVEETVGVCRKY
Sbjct: 61  GKAFGGCITHLCGSFIFFHVDTMEFLVFKDGRDCSKSVEETVGVCRKY 108

[Close]

BLAST of IVF0002403 vs. ExPASy TrEMBL
Match: A0A0A0LA26 (Dynein light chain OS=Cucumis sativus OX=3659 GN=Csa_3G733350 PE=3 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.1e-56
Identity = 106/108 (98.15%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60
           MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA
Sbjct: 1   MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60

Query: 61  GKAFGGCITHLCGSFIFFHVDTMEFLVFKDGRDCSKSVEETVGVCRKY 109
           GKAFGGCITHLCGS+IFFHVDTMEFLVFKDGRDC KSVEETVGVCRKY
Sbjct: 61  GKAFGGCITHLCGSYIFFHVDTMEFLVFKDGRDCFKSVEETVGVCRKY 108

[Close]

BLAST of IVF0002403 vs. ExPASy TrEMBL
Match: A0A6J1CWC6 (Dynein light chain OS=Momordica charantia OX=3673 GN=LOC111015000 PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 9.9e-50
Identity = 95/107 (88.79%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60
           MLEGKA VRETDMP+GIQSHVLELAYKALD HEVSDCQSIA FIKQRFDEAYGPAWHCV 
Sbjct: 1   MLEGKAAVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60

Query: 61  GKAFGGCITHLCGSFIFFHVDTMEFLVFKDGRDCSKSVEETVGVCRK 108
           GKAFGGCITHLCGSFIFFHVD MEFL+FKDGRD SKS+EET+GV +K
Sbjct: 61  GKAFGGCITHLCGSFIFFHVDIMEFLIFKDGRDFSKSIEETLGVRQK 107

[Close]

BLAST of IVF0002403 vs. ExPASy TrEMBL
Match: A0A5J4ZMN8 (Dynein light chain OS=Nyssa sinensis OX=561372 GN=F0562_016270 PE=3 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 8.1e-44
Identity = 83/107 (77.57%), Postives = 95/107 (88.79%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60
           MLEGKAV+RETDMP+ +QSHV+ELAY+ALD HE SDCQSIAH+IKQ+FDEAYGPAWHCV 
Sbjct: 1   MLEGKAVLRETDMPEALQSHVMELAYQALDLHEASDCQSIAHYIKQKFDEAYGPAWHCVV 60

Query: 61  GKAFGGCITHLCGSFIFFHVDTMEFLVFKDGRDCSKSVEETVGVCRK 108
           GK FG CITHLCGSFIFF VD MEFLVFKDG+D ++S EE +GV +K
Sbjct: 61  GKDFGSCITHLCGSFIFFRVDMMEFLVFKDGKDLTESKEEAIGVLQK 107

[Close]

BLAST of IVF0002403 vs. ExPASy TrEMBL
Match: W9QN85 (Dynein light chain OS=Morus notabilis OX=981085 GN=L484_016957 PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 4.0e-43
Identity = 82/107 (76.64%), Postives = 95/107 (88.79%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60
           MLEGKAVVRETDM Q +QSHV+ELAYKALD HEVSDCQSIAH+IKQ+FDEAYGPAWHCV 
Sbjct: 1   MLEGKAVVRETDMSQIMQSHVMELAYKALDLHEVSDCQSIAHYIKQKFDEAYGPAWHCVV 60

Query: 61  GKAFGGCITHLCGSFIFFHVDTMEFLVFKDGRDCSKSVEETVGVCRK 108
           G  FG CITHLCGSFIFFHV+ MEFL+FKDG+D ++S +E +GV ++
Sbjct: 61  GNDFGSCITHLCGSFIFFHVEMMEFLIFKDGKDINESKDEAIGVLKR 107

[Close]

BLAST of IVF0002403 vs. NCBI nr
Match: XP_008442502.1 (PREDICTED: dynein light chain 1, cytoplasmic-like [Cucumis melo])

HSP 1 Score: 232 bits (591), Expect = 5.60e-77
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60
           MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA
Sbjct: 1   MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60

Query: 61  GKAFGGCITHLCGSFIFFHVDTMEFLVFKDGRDCSKSVEETVGVCRKY 108
           GKAFGGCITHLCGSFIFFHVDTMEFLVFKDGRDCSKSVEETVGVCRKY
Sbjct: 61  GKAFGGCITHLCGSFIFFHVDTMEFLVFKDGRDCSKSVEETVGVCRKY 108

[Close]

BLAST of IVF0002403 vs. NCBI nr
Match: KGN58830.1 (hypothetical protein Csa_001625 [Cucumis sativus])

HSP 1 Score: 228 bits (582), Expect = 1.32e-75
Identity = 106/108 (98.15%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60
           MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA
Sbjct: 1   MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60

Query: 61  GKAFGGCITHLCGSFIFFHVDTMEFLVFKDGRDCSKSVEETVGVCRKY 108
           GKAFGGCITHLCGS+IFFHVDTMEFLVFKDGRDC KSVEETVGVCRKY
Sbjct: 61  GKAFGGCITHLCGSYIFFHVDTMEFLVFKDGRDCFKSVEETVGVCRKY 108

[Close]

BLAST of IVF0002403 vs. NCBI nr
Match: XP_022145583.1 (dynein light chain-like [Momordica charantia])

HSP 1 Score: 205 bits (521), Expect = 2.68e-66
Identity = 95/107 (88.79%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60
           MLEGKA VRETDMP+GIQSHVLELAYKALD HEVSDCQSIA FIKQRFDEAYGPAWHCV 
Sbjct: 1   MLEGKAAVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60

Query: 61  GKAFGGCITHLCGSFIFFHVDTMEFLVFKDGRDCSKSVEETVGVCRK 107
           GKAFGGCITHLCGSFIFFHVD MEFL+FKDGRD SKS+EET+GV +K
Sbjct: 61  GKAFGGCITHLCGSFIFFHVDIMEFLIFKDGRDFSKSIEETLGVRQK 107

[Close]

BLAST of IVF0002403 vs. NCBI nr
Match: KAA8518956.1 (hypothetical protein F0562_016270 [Nyssa sinensis])

HSP 1 Score: 185 bits (470), Expect = 1.89e-58
Identity = 83/107 (77.57%), Postives = 95/107 (88.79%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60
           MLEGKAV+RETDMP+ +QSHV+ELAY+ALD HE SDCQSIAH+IKQ+FDEAYGPAWHCV 
Sbjct: 1   MLEGKAVLRETDMPEALQSHVMELAYQALDLHEASDCQSIAHYIKQKFDEAYGPAWHCVV 60

Query: 61  GKAFGGCITHLCGSFIFFHVDTMEFLVFKDGRDCSKSVEETVGVCRK 107
           GK FG CITHLCGSFIFF VD MEFLVFKDG+D ++S EE +GV +K
Sbjct: 61  GKDFGSCITHLCGSFIFFRVDMMEFLVFKDGKDLTESKEEAIGVLQK 107

[Close]

BLAST of IVF0002403 vs. NCBI nr
Match: XP_010088565.1 (dynein light chain 1, cytoplasmic [Morus notabilis] >EXB36706.1 putative dynein light chain [Morus notabilis])

HSP 1 Score: 183 bits (464), Expect = 1.55e-57
Identity = 82/107 (76.64%), Postives = 95/107 (88.79%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60
           MLEGKAVVRETDM Q +QSHV+ELAYKALD HEVSDCQSIAH+IKQ+FDEAYGPAWHCV 
Sbjct: 1   MLEGKAVVRETDMSQIMQSHVMELAYKALDLHEVSDCQSIAHYIKQKFDEAYGPAWHCVV 60

Query: 61  GKAFGGCITHLCGSFIFFHVDTMEFLVFKDGRDCSKSVEETVGVCRK 107
           G  FG CITHLCGSFIFFHV+ MEFL+FKDG+D ++S +E +GV ++
Sbjct: 61  GNDFGSCITHLCGSFIFFHVEMMEFLIFKDGKDINESKDEAIGVLKR 107

[Close]

BLAST of IVF0002403 vs. TAIR 10
Match: AT1G52240.2 (RHO guanyl-nucleotide exchange factor 11 )

HSP 1 Score: 98.2 bits (243), Expect = 4.3e-21
Identity = 45/89 (50.56%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 1  MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60
          MLEGKA+V ++DMP  +Q   +  A +ALD  +V DC+SIA  IK+ FDE YG  W CV 
Sbjct: 1  MLEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVV 60

Query: 61 GKAFGGCITHLCGSFIFFHVDTMEFLVFK 90
          G  FG   TH  G+FI+F ++T++FL+FK
Sbjct: 61 GSNFGCFFTHSKGTFIYFQLETLKFLIFK 89

[Close]

BLAST of IVF0002403 vs. TAIR 10
Match: AT3G16120.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 95.9 bits (237), Expect = 2.1e-20
Identity = 46/89 (51.69%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 1  MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60
          MLEGKA V ETDMP  +Q   +++A ++LD  +V D  SIA  IK+ FDE YG  W CV 
Sbjct: 1  MLEGKAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVV 60

Query: 61 GKAFGGCITHLCGSFIFFHVDTMEFLVFK 90
          G  FG   TH  G+FI+FH+ T+ FL+FK
Sbjct: 61 GTNFGCFFTHSKGTFIYFHLGTLNFLIFK 89

[Close]

BLAST of IVF0002403 vs. TAIR 10
Match: AT4G27360.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 90.5 bits (223), Expect = 8.9e-19
Identity = 43/89 (48.31%), Postives = 57/89 (64.04%), Query Frame = 0


Query: 1  MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60
          MLEGKAV+ +TDM Q ++   L LA KALD  +V++   IA FIK+ FD +YG  W C+ 
Sbjct: 1  MLEGKAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIV 60

Query: 61 GKAFGGCITHLCGSFIFFHVDTMEFLVFK 90
          G  FG  +TH  G FI F V ++  L+FK
Sbjct: 61 GTHFGSFVTHCSGCFIHFSVGSLTILLFK 89

[Close]

BLAST of IVF0002403 vs. TAIR 10
Match: AT5G20110.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 76.3 bits (186), Expect = 1.7e-14
Identity = 33/78 (42.31%), Postives = 47/78 (60.26%), Query Frame = 0


Query: 12  DMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVAGKAFGGCITHL 71
           DMP  +Q+H    A   LD  E    + +A  +K+ FD+ YGPAWHC+ G +FG  +TH 
Sbjct: 123 DMPGFMQAHAFRCARMTLDSLEKFSSKHMAFNLKKEFDKGYGPAWHCIVGSSFGSFVTHS 182

Query: 72  CGSFIFFHVDTMEFLVFK 90
            G FI+F +D +  L+FK
Sbjct: 183 TGCFIYFSMDKLYVLLFK 200

[Close]

BLAST of IVF0002403 vs. TAIR 10
Match: AT1G23220.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 75.1 bits (183), Expect = 3.9e-14
Identity = 34/83 (40.96%), Postives = 52/83 (62.65%), Query Frame = 0


Query: 8   VRETDMPQGIQSHVLELAYKALDQHE-VSDCQSIAHFIKQRFDEAYGPAWHCVAGKAFGG 67
           VR +DMP   Q+    L+ + L+     +D + +AH +K+ FD AYGPAWHC+ G +FG 
Sbjct: 38  VRASDMPLPQQNRAFSLSREILNATPGKADNKRLAHALKKDFDSAYGPAWHCIVGTSFGS 97

Query: 68  CITHLCGSFIFFHVDTMEFLVFK 90
            +TH  G F++F +D +  L+FK
Sbjct: 98  YVTHSTGGFLYFQIDKVYVLLFK 120

The following BLAST results are available for this feature:

BLAST of IVF0002403 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94758	4.4e-15	40.66	Dynein light chain OS=Schistosoma mansoni OX=6183 GN=DLC PE=1 SV=1	[more]
Q94748	9.9e-15	40.66	Probable dynein light chain OS=Schistosoma mansoni OX=6183 PE=3 SV=1	[more]
O02414	1.3e-14	38.46	Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=10431...	[more]
Q22799	4.9e-14	36.26	Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=...	[more]
O96860	4.9e-14	37.36	Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=Cdlc2 PE...	[more]

BLAST of IVF0002403 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B5U2	9.8e-58	100.00	Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103486353 PE=3 SV=1	[more]
A0A0A0LA26	1.1e-56	98.15	Dynein light chain OS=Cucumis sativus OX=3659 GN=Csa_3G733350 PE=3 SV=1	[more]
A0A6J1CWC6	9.9e-50	88.79	Dynein light chain OS=Momordica charantia OX=3673 GN=LOC111015000 PE=3 SV=1	[more]
A0A5J4ZMN8	8.1e-44	77.57	Dynein light chain OS=Nyssa sinensis OX=561372 GN=F0562_016270 PE=3 SV=1	[more]
W9QN85	4.0e-43	76.64	Dynein light chain OS=Morus notabilis OX=981085 GN=L484_016957 PE=3 SV=1	[more]

BLAST of IVF0002403 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442502.1	5.60e-77	100.00	PREDICTED: dynein light chain 1, cytoplasmic-like [Cucumis melo]	[more]
KGN58830.1	1.32e-75	98.15	hypothetical protein Csa_001625 [Cucumis sativus]	[more]
XP_022145583.1	2.68e-66	88.79	dynein light chain-like [Momordica charantia]	[more]
KAA8518956.1	1.89e-58	77.57	hypothetical protein F0562_016270 [Nyssa sinensis]	[more]
XP_010088565.1	1.55e-57	76.64	dynein light chain 1, cytoplasmic [Morus notabilis] >EXB36706.1 putative dynein ...	[more]

BLAST of IVF0002403 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52240.2	4.3e-21	50.56	RHO guanyl-nucleotide exchange factor 11	[more]
AT3G16120.1	2.1e-20	51.69	Dynein light chain type 1 family protein	[more]
AT4G27360.1	8.9e-19	48.31	Dynein light chain type 1 family protein	[more]
AT5G20110.1	1.7e-14	42.31	Dynein light chain type 1 family protein	[more]
AT1G23220.1	3.9e-14	40.96	Dynein light chain type 1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001372	Dynein light chain, type 1/2	SMART	SM01375	Dynein_light_2	coord: 1..90 e-value: 1.5E-37 score: 140.7
IPR001372	Dynein light chain, type 1/2	PFAM	PF01221	Dynein_light	coord: 5..89 e-value: 2.5E-29 score: 101.5
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 1..107
IPR037177	Dynein light chain superfamily	GENE3D	3.30.740.10	Protein Inhibitor Of Neuronal Nitric Oxide Synthase;	coord: 2..90 e-value: 1.5E-29 score: 103.8
IPR037177	Dynein light chain superfamily	SUPERFAMILY	54648	DLC	coord: 1..90
None	No IPR available	PANTHER	PTHR11886:SF85	DYNEIN LIGHT CHAIN	coord: 1..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0002403.2	IVF0002403.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0030286	dynein complex
cellular_component	GO:0005874	microtubule
molecular_function	GO:0045505	dynein intermediate chain binding
molecular_function	GO:0051959	dynein light intermediate chain binding