IVF0002384 (gene) Melon (IVF77) v1

Overview


Name	IVF0002384
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposable element Tf2
Location	chr06: 22832423 .. 22832632 (-)
RNA-Seq Expression	IVF0002384
Synteny	IVF0002384

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCTCAATTGCTGGAGCAAAGTCTGAAGCAGATCTCCAGGCAGTCATGGAAACAGTCGTCAACAATAATTCCAACGACAACAAACAAAATGACCCTGAAGATATCACAAATCTCTCAGATTCATCTGTCAATGATATCAATTTTGAAAATGATCCTTATTACAATTTCGATATTTTCGATCCCTATTTGGATTCCCAACCAGGATAA

mRNA sequence

ATGACCTCAATTGCTGGAGCAAAGTCTGAAGCAGATCTCCAGGCAGTCATGGAAACAGTCGTCAACAATAATTCCAACGACAACAAACAAAATGACCCTGAAGATATCACAAATCTCTCAGATTCATCTGTCAATGATATCAATTTTGAAAATGATCCTTATTACAATTTCGATATTTTCGATCCCTATTTGGATTCCCAACCAGGATAA

Coding sequence (CDS)

ATGACCTCAATTGCTGGAGCAAAGTCTGAAGCAGATCTCCAGGCAGTCATGGAAACAGTCGTCAACAATAATTCCAACGACAACAAACAAAATGACCCTGAAGATATCACAAATCTCTCAGATTCATCTGTCAATGATATCAATTTTGAAAATGATCCTTATTACAATTTCGATATTTTCGATCCCTATTTGGATTCCCAACCAGGATAA

Protein sequence

MTSIAGAKSEADLQAVMETVVNNNSNDNKQNDPEDITNLSDSSVNDINFENDPYYNFDIFDPYLDSQPG

Homology

[Close]

BLAST of IVF0002384 vs. ExPASy TrEMBL
Match: A0A5D3BD22 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G001850 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.8e-28
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MTSIAGAKSEADLQAVMETVVNNNSNDNKQNDPEDITNLSDSSVNDINFENDPYYNFDIF 60
          MTSIAGAKSEADLQAVMETVVNNNSNDNKQNDPEDITNLSDSSVNDINFENDPYYNFDIF
Sbjct: 1  MTSIAGAKSEADLQAVMETVVNNNSNDNKQNDPEDITNLSDSSVNDINFENDPYYNFDIF 60

Query: 61 DPYLDSQPG 70
          DPYLDSQPG
Sbjct: 61 DPYLDSQPG 69

[Close]

BLAST of IVF0002384 vs. ExPASy TrEMBL
Match: A0A5A7STS6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00870 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.7e-24
Identity = 62/69 (89.86%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  MTSIAGAKSEADLQAVMETVVNNNSNDNKQNDPEDITNLSDSSVNDINFENDPYYNFDIF 60
          MTSIAGAKSE+DLQAV+ETVVNNNS+DNKQ+DPEDITNLSDSSVNDI+F NDPYYNFDI 
Sbjct: 1  MTSIAGAKSESDLQAVIETVVNNNSDDNKQDDPEDITNLSDSSVNDIDFANDPYYNFDIS 60

Query: 61 DPYLDSQPG 70
          DPYLDSQPG
Sbjct: 61 DPYLDSQPG 69

[Close]

BLAST of IVF0002384 vs. ExPASy TrEMBL
Match: A0A5A7U8X4 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G001080 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 5.6e-22
Identity = 60/69 (86.96%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 1   MTSIAGAKSEADLQAVMETVVNNNSNDNKQNDPEDITNLSDSSVNDINFENDPYYNFDIF 60
           MTSIAGAKSEADLQAVMETVVNNNS+DNKQ+DPEDI N+SDSSVNDI+F NDPYYNFDI 
Sbjct: 133 MTSIAGAKSEADLQAVMETVVNNNSDDNKQDDPEDIINISDSSVNDIDFVNDPYYNFDIS 192

Query: 61  DPYLDSQPG 70
           D YLDSQ G
Sbjct: 193 DLYLDSQSG 201

[Close]

BLAST of IVF0002384 vs. ExPASy TrEMBL
Match: A0A5D3DTD3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold322G00530 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 7.3e-22
Identity = 59/69 (85.51%), Postives = 63/69 (91.30%), Query Frame = 0


Query: 1  MTSIAGAKSEADLQAVMETVVNNNSNDNKQNDPEDITNLSDSSVNDINFENDPYYNFDIF 60
          MTSI GAKSEADLQ VMETVVNNN +DNKQ+DPEDIT LSDSSVNDI+F NDPYYNF+IF
Sbjct: 1  MTSIVGAKSEADLQTVMETVVNNNFDDNKQDDPEDITYLSDSSVNDIDFANDPYYNFEIF 60

Query: 61 DPYLDSQPG 70
          DPYLDSQ G
Sbjct: 61 DPYLDSQLG 69

[Close]

BLAST of IVF0002384 vs. ExPASy TrEMBL
Match: A0A5D3CI63 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold263G00370 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.6e-21
Identity = 57/68 (83.82%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1   MTSIAGAKSEADLQAVMETVVNNNSNDNKQNDPEDITNLSDSSVNDINFENDPYYNFDIF 60
           MT+I GAKSEADLQAVM+TVVNNNS+D KQ+ PEDITNLS+SSVNDI+FEN+PYYNFDIF
Sbjct: 125 MTTITGAKSEADLQAVMKTVVNNNSDDKKQDGPEDITNLSNSSVNDIDFENNPYYNFDIF 184

Query: 61  DPYLDSQP 69
           DPYL+SQP
Sbjct: 185 DPYLNSQP 192

[Close]

BLAST of IVF0002384 vs. NCBI nr
Match: KAA0065792.1 (hypothetical protein E6C27_scaffold37G00900 [Cucumis melo var. makuwa] >TYJ96531.1 hypothetical protein E5676_scaffold546G001850 [Cucumis melo var. makuwa])

HSP 1 Score: 135 bits (340), Expect = 6.77e-40
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MTSIAGAKSEADLQAVMETVVNNNSNDNKQNDPEDITNLSDSSVNDINFENDPYYNFDIF 60
          MTSIAGAKSEADLQAVMETVVNNNSNDNKQNDPEDITNLSDSSVNDINFENDPYYNFDIF
Sbjct: 1  MTSIAGAKSEADLQAVMETVVNNNSNDNKQNDPEDITNLSDSSVNDINFENDPYYNFDIF 60

Query: 61 DPYLDSQPG 69
          DPYLDSQPG
Sbjct: 61 DPYLDSQPG 69

[Close]

BLAST of IVF0002384 vs. NCBI nr
Match: KAA0033913.1 (hypothetical protein E6C27_scaffold43059G001040 [Cucumis melo var. makuwa] >TYK01295.1 hypothetical protein E5676_scaffold49G00870 [Cucumis melo var. makuwa])

HSP 1 Score: 121 bits (304), Expect = 2.12e-34
Identity = 62/69 (89.86%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  MTSIAGAKSEADLQAVMETVVNNNSNDNKQNDPEDITNLSDSSVNDINFENDPYYNFDIF 60
          MTSIAGAKSE+DLQAV+ETVVNNNS+DNKQ+DPEDITNLSDSSVNDI+F NDPYYNFDI 
Sbjct: 1  MTSIAGAKSESDLQAVIETVVNNNSDDNKQDDPEDITNLSDSSVNDIDFANDPYYNFDIS 60

Query: 61 DPYLDSQPG 69
          DPYLDSQPG
Sbjct: 61 DPYLDSQPG 69

[Close]

BLAST of IVF0002384 vs. NCBI nr
Match: KAA0039132.1 (hypothetical protein E6C27_scaffold121G00210 [Cucumis melo var. makuwa] >TYK26981.1 hypothetical protein E5676_scaffold322G00530 [Cucumis melo var. makuwa])

HSP 1 Score: 113 bits (283), Expect = 3.39e-31
Identity = 59/69 (85.51%), Postives = 63/69 (91.30%), Query Frame = 0


Query: 1  MTSIAGAKSEADLQAVMETVVNNNSNDNKQNDPEDITNLSDSSVNDINFENDPYYNFDIF 60
          MTSI GAKSEADLQ VMETVVNNN +DNKQ+DPEDIT LSDSSVNDI+F NDPYYNF+IF
Sbjct: 1  MTSIVGAKSEADLQTVMETVVNNNFDDNKQDDPEDITYLSDSSVNDIDFANDPYYNFEIF 60

Query: 61 DPYLDSQPG 69
          DPYLDSQ G
Sbjct: 61 DPYLDSQLG 69

[Close]

BLAST of IVF0002384 vs. NCBI nr
Match: KAA0038921.1 (hypothetical protein E6C27_scaffold1170G00910 [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (279), Expect = 1.28e-30
Identity = 59/66 (89.39%), Postives = 62/66 (93.94%), Query Frame = 0


Query: 1  MTSIAGAKSEADLQAVMETVVNNNSNDNKQNDPEDITNLSDSSVNDINFENDPYYNFDIF 60
          MTSIA AKSEADLQAVMETVVNNNS+DNKQ+ PEDI NLSDSSVNDI+F NDPYYNFDIF
Sbjct: 1  MTSIAEAKSEADLQAVMETVVNNNSDDNKQDHPEDIINLSDSSVNDIDFANDPYYNFDIF 60

Query: 61 DPYLDS 66
          DPYLDS
Sbjct: 61 DPYLDS 66

[Close]

BLAST of IVF0002384 vs. NCBI nr
Match: KAA0050626.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK07814.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (284), Expect = 9.78e-30
Identity = 60/69 (86.96%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 1   MTSIAGAKSEADLQAVMETVVNNNSNDNKQNDPEDITNLSDSSVNDINFENDPYYNFDIF 60
           MTSIAGAKSEADLQAVMETVVNNNS+DNKQ+DPEDI N+SDSSVNDI+F NDPYYNFDI 
Sbjct: 133 MTSIAGAKSEADLQAVMETVVNNNSDDNKQDDPEDIINISDSSVNDIDFVNDPYYNFDIS 192

Query: 61  DPYLDSQPG 69
           D YLDSQ G
Sbjct: 193 DLYLDSQSG 201

The following BLAST results are available for this feature:

BLAST of IVF0002384 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0002384 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BD22	1.8e-28	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7STS6	2.7e-24	89.86	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U8X4	5.6e-22	86.96	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5D3DTD3	7.3e-22	85.51	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CI63	1.6e-21	83.82	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0002384 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065792.1	6.77e-40	100.00	hypothetical protein E6C27_scaffold37G00900 [Cucumis melo var. makuwa] >TYJ96531...	[more]
KAA0033913.1	2.12e-34	89.86	hypothetical protein E6C27_scaffold43059G001040 [Cucumis melo var. makuwa] >TYK0...	[more]
KAA0039132.1	3.39e-31	85.51	hypothetical protein E6C27_scaffold121G00210 [Cucumis melo var. makuwa] >TYK2698...	[more]
KAA0038921.1	1.28e-30	89.39	hypothetical protein E6C27_scaffold1170G00910 [Cucumis melo var. makuwa]	[more]
KAA0050626.1	9.78e-30	86.96	Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK07814.1 Retrotransp...	[more]

BLAST of IVF0002384 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..44

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0002384.1	IVF0002384.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
molecular_function	GO:0016301	kinase activity